PRGDB00071017 (Mdo.24186)

Mdo.24186
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	226753791 (GO509514)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Malus x domestica
	Comment?

NP_180274.1| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] pir|C84668 probable receptor-like protein kinase [imported] - Arabidopsis thaliana g>

DNA Sequence

ATATCGAATTCCGTTGCTGTCGAGCAAAAGGAAGGAAAGAATTTGCAAGAGAAGTGAAGAAACTAGGAAACATCAGGCACCCAAATCTAGTTTCTCTGCTGGGTTATTACTGGGGCCCTATAGAACATGAGAAACTGATTATATCAACTTATATCAATGCACAATCATTGGCATTCCATCTCCATGAGGCAGAGCGAACAAAACTCTCTCCCCTGTCACTTGAGGAACGGCTTAGGATTTCTGTAGATGTTGCCCGATGTCTGAACTTCCTGCATAATGAGAAGGCAATTCCCCATGGCAACCTCAAATCCACGAATATTTTATTAGAAACTCCTAGTCTGAATGCACTCCTTACAGATTATAGTCTCCACCGAATTTTGACTCCCGCTGGGACTACTGAGCAAGTCTTGAATGCAGGTGCTCTTGGCTATCGCCCCCCTGAATTTGCTAGCTCAAGTAAACCCTGCCCATCGTTGAAAAGTGATGTCTATGCATTTGGGGTGATCTTGTTGGAGCTCCTGACTGGAAAGAGTTCCGGGGAGATTGTCTCTGGGATACCGGGTGTGGTTGATCTGACAGACTGGGTGA

Protein sequences

Name	Description	Sequence
Mdo.24186	translated coding region predicted by ESTScan from UniGene Mdo.24186	XIEFRCCRAKGRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGKSSGEIVSGIPGVVDLTDWVX

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-197	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	XIEFRCCRAKGRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGKSSGEIVSGIPGVVDLTDWVX
HMMSmart: SM00219 IPR020635	2-196	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	IEFRCCRAKGRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGKSSGEIVSGIPGVVDLTDWV
HMMSmart: SM00220 IPR002290	5-196	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	RCCRAKGRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGKSSGEIVSGIPGVVDLTDWV
HMMPanther: PTHR24420:SF466	9-196	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	AKGRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGKSSGEIVSGIPGVVDLTDWV
HMMPanther: PTHR24420	9-196	FAMILY NOT NAMED,FAMILY NOT NAMED	AKGRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGKSSGEIVSGIPGVVDLTDWV
HMMPfam: PF07714 IPR001245	10-177	Pkinase_Tyr Serine-threonine/tyrosine-protein kinase	KGRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGK
superfamily: SSF56112 IPR011009	10-177	Protein kinase-like (PK-like) Protein kinase-like domain	KGRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGK
Gene3D: G3DSA:1.10.510.10	11-178	no description	GRKEFAREVKKLGNIRHPNLVSLLGYYWGPIEHEKLIISTYINAQSLAFHLHEAERTKLSPLSLEERLRISVDVARCLNFLHNEKAIPHGNLKSTNILLETPSLNALLTDYSLHRILTPAGTTEQVLNAGALGYRPPEFASSSKPCPSLKSDVYAFGVILLELLTGKS

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Analyses

Blast

Blast matches against Reference R-Genes. Show