PRGDB00071897 (Os.3379)

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Os.3379
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 4062937 (AB003496)
Gene Class Unknown
Domain Type
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa Japonica Group mRNA for dihydroflavonol 4-reductase, complete cds

DNA Sequence

TGCGAATCCAACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGGTCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGCCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGACGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCTCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCTCCGGTTTCATTTTAATTGACACTTTGAACAATAATACGTTTTACAAGATATACCTTTGACTTTaaaaaaaaaaaaaaa


Protein sequences

Name Description Sequence
Os.3379 translated coding region predicted by ESTScan from UniGene Os.3379

MGEAVKGPVVVTGASGFVGSWLVMKLLQAGYTVRATVRDPSNVGKTKPLLELAGSKERLTLWKADLGEEGSFDAAIRGCTGVFHVATPMDFESEDPENEVVKPTVEGMLSIMRACRDAGTVKRIVFTSSAGTVNIEERQRPSYDHDDWSDIDFCRRVKMTGWMYFVSKSLAEKAAMEYAREHGLDLISVIPTLVVGPFISNGMPPSHVTALALLTGNEAHYSILKQVQFVHLDDLCDAEIFLFESPEARGRYVCSSHDATIHGLATMLADMFPEYDVPRSFPGIDAXPPPAGALLVVEAPRPRVQVQVHAGGHVRGRRPDVQGEGASPAAAATADDGRGRRRRLGGCGRREGTDTGEGDRDGGWC

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.40.50.720
IPR016040
9-234 no description
NAD(P)-binding domain

VVVTGASGFVGSWLVMKLLQAGYTVRATVRDPSNVGKTKPLLELAGSKERLTLWKADLGEEGSFDAAIRGCTGVFHVATPMDFESEDPENEVVKPTVEGMLSIMRACRDAGTVKRIVFTSSAGTVNIEERQRPSYDHDDWSDIDFCRRVKMTGWMYFVSKSLAEKAAMEYAREHGLDLISVIPTLVVGPFISNGMPPSHVTALALLTGNEAHYSILKQVQFVHLDD

HMMPanther: PTHR10366:SF9
9-281 CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE

VVVTGASGFVGSWLVMKLLQAGYTVRATVRDPSNVGKTKPLLELAGSKERLTLWKADLGEEGSFDAAIRGCTGVFHVATPMDFESEDPENEVVKPTVEGMLSIMRACRDAGTVKRIVFTSSAGTVNIEERQRPSYDHDDWSDIDFCRRVKMTGWMYFVSKSLAEKAAMEYAREHGLDLISVIPTLVVGPFISNGMPPSHVTALALLTGNEAHYSILKQVQFVHLDDLCDAEIFLFESPEARGRYVCSSHDATIHGLATMLADMFPEYDVPRSF

HMMPanther: PTHR10366
9-281 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

VVVTGASGFVGSWLVMKLLQAGYTVRATVRDPSNVGKTKPLLELAGSKERLTLWKADLGEEGSFDAAIRGCTGVFHVATPMDFESEDPENEVVKPTVEGMLSIMRACRDAGTVKRIVFTSSAGTVNIEERQRPSYDHDDWSDIDFCRRVKMTGWMYFVSKSLAEKAAMEYAREHGLDLISVIPTLVVGPFISNGMPPSHVTALALLTGNEAHYSILKQVQFVHLDDLCDAEIFLFESPEARGRYVCSSHDATIHGLATMLADMFPEYDVPRSF

superfamily: SSF51735
9-283 NAD(P)-binding Rossmann-fold domains

VVVTGASGFVGSWLVMKLLQAGYTVRATVRDPSNVGKTKPLLELAGSKERLTLWKADLGEEGSFDAAIRGCTGVFHVATPMDFESEDPENEVVKPTVEGMLSIMRACRDAGTVKRIVFTSSAGTVNIEERQRPSYDHDDWSDIDFCRRVKMTGWMYFVSKSLAEKAAMEYAREHGLDLISVIPTLVVGPFISNGMPPSHVTALALLTGNEAHYSILKQVQFVHLDDLCDAEIFLFESPEARGRYVCSSHDATIHGLATMLADMFPEYDVPRSFPG

HMMPfam: PF01370
IPR001509
9-253 Epimerase
NAD-dependent epimerase/dehydratase

VVVTGASGFVGSWLVMKLLQAGYTVRATVRDPSNVGKTKPLLELAGSKERLTLWKADLGEEGSFDAAIRGCTGVFHVATPMDFESEDPENEVVKPTVEGMLSIMRACRDAGTVKRIVFTSSAGTVNIEERQRPSYDHDDWSDIDFCRRVKMTGWMYFVSKSLAEKAAMEYAREHGLDLISVIPTLVVGPFISNGMPPSHVTALALLTGNEAHYSILKQVQFVHLDDLCDAEIFLFESPEARGRYV

Seg: seg
286-300 seg

AXPPPAGALLVVEAP

Seg: seg
323-363 seg

GEGASPAAAATADDGRGRRRRLGGCGRREGTDTGEGDRDGG






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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