PRGDB00073961 (Pin.8453)
Pin.8453 | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
GenBank | 239852150 (GR293072) |
Gene Class | Unknown |
Domain Type | LRR |
Gene Species | Phytophthora infestans |
DNA Sequence
AAATGAATTGGAAGGCTGTTTACCGGAACAATTAGGCAAACTAGACAAATTGCGGGAATTGGGGCTGGAAGGCAACAAATTGACGCAACTACCGGAGTCTATTGGTGGTCTAGTTCATTTGGAGGTGCTCCGGGTCGAGAGCAATCAACTAAAAGCGCTCCCGTCGACAATCGGGAAATTAAGAAACTTGAAGACGTTGACGGCGCACTCGAATCAAATTGCAGCGCTCCCAGCATCATTTAACTCACTTACAGGGCTGCTGACGTTAGATTTGAAGAAGAATTGCTTGGCTACTACTGGTGACGCTTTTCTCGAGCTGACAGCCGTCAAGTACATTGATCTGCGTCAGAACAAGCTGGAAATATTTCCAACGCTGCCCGAGAATAACTCGTGCTTAGATCAGCTCTTCCTGGGGTTCAATTTGCTGCGTGATGTACCCCAAGAAGTTGTGCTGAGTGTTAAAGAGTCCCTGACGGTGCTGGATGTTCGAGACAACAAGCTGCAGCGATTGTCGGATGGAATTCCACAGCTGTACCGCTTGAAGACGCTCGATGTTACAAACAACGACCTGTTTGATTTACCCCCGGGCTTTGGGATATCTCAAGTATCTGACTCACTTGTTGGTTGAGGGAAACCCTCTACGATCCATCCCGCCGATCTATTATCTCGGCTGGAACGGAGCCACTGAAGAAATATCTGCGTACTCGCGGTAACCACCAGTCGGAGTCGATGCCATGGAGAGAGTGGACGAGTTCGGCCATCCGACAGAAGGTGATAGAGCAAGACGAACCTATGGCCGAAGAACC
Protein sequences
Name | Description | Sequence |
---|---|---|
Pin.8453 | translated coding region predicted by ESTScan from UniGene Pin.8453 | XNELEGCLPEQLGKLDKLRELGLEGNKLTQLPESIGGLVHLEVLRVESNQLKALPSTIGKLRNLKTLTAHSNQIAALPASFNSLTGLLTLDLKKNCLATTGDAFLELTAVKYIDLRQNKLEIFPTLPENNSCLDQLFLGFNLLRDVPQEVVLSVKESLTVLDVRDNKLQRLSDGIPQLYRLKTLDVTNNDLFDLPPGFGISQVSDSLVGXRETLYDPSRRSIISAGTEPLKKYLRTRGNHQSESMPWREWTSSAIRQKVIEQDEPMAEEP |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52058 | 2-201 | L domain-like,LRR | NELEGCLPEQLGKLDKLRELGLEGNKLTQLPESIGGLVHLEVLRVESNQLKALPSTIGKLRNLKTLTAHSNQIAALPASFNSLTGLLTLDLKKNCLATTGDAFLELTAVKYIDLRQNKLEIFPTLPENNSCLDQLFLGFNLLRDVPQEVVLSVKESLTVLDVRDNKLQRLSDGIPQLYRLKTLDVTNNDLFDLPPGFGIS |
Gene3D: G3DSA:3.80.10.10 | 2-196 | no description | NELEGCLPEQLGKLDKLRELGLEGNKLTQLPESIGGLVHLEVLRVESNQLKALPSTIGKLRNLKTLTAHSNQIAALPASFNSLTGLLTLDLKKNCLATTGDAFLELTAVKYIDLRQNKLEIFPTLPENNSCLDQLFLGFNLLRDVPQEVVLSVKESLTVLDVRDNKLQRLSDGIPQLYRLKTLDVTNNDLFDLPP |
HMMPanther: PTHR23155 | 3-199 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ELEGCLPEQLGKLDKLRELGLEGNKLTQLPESIGGLVHLEVLRVESNQLKALPSTIGKLRNLKTLTAHSNQIAALPASFNSLTGLLTLDLKKNCLATTGDAFLELTAVKYIDLRQNKLEIFPTLPENNSCLDQLFLGFNLLRDVPQEVVLSVKESLTVLDVRDNKLQRLSDGIPQLYRLKTLDVTNNDLFDLPPGFG |
HMMSmart: SM00369 IPR003591
|
15-37 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LDKLRELGLEGNKLTQLPESIGG |
HMMSmart: SM00364 | 15-34 | Leucine-rich repeats, bacterial type | LDKLRELGLEGNKLTQLPES |
HMMPfam: PF00560 IPR001611
|
17-38 | LRR_1 Leucine-rich repeat
|
KLRELGLEGNKLTQLPESIGGL |
HMMSmart: SM00364 | 38-57 | Leucine-rich repeats, bacterial type | LVHLEVLRVESNQLKALPST |
HMMSmart: SM00369 IPR003591
|
38-60 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LVHLEVLRVESNQLKALPSTIGK |
HMMPfam: PF12799 | 40-79 | LRR_4,Leucine Rich repeats (2 copies) | HLEVLRVESNQLKALPSTIGKLRNLKTLTAHSNQIAALPA |
HMMSmart: SM00364 | 61-80 | Leucine-rich repeats, bacterial type | LRNLKTLTAHSNQIAALPAS |
HMMSmart: SM00369 IPR003591
|
61-83 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LRNLKTLTAHSNQIAALPASFNS |
HMMSmart: SM00364 | 107-126 | Leucine-rich repeats, bacterial type | LTAVKYIDLRQNKLEIFPTL |
HMMSmart: SM00369 IPR003591
|
107-129 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTAVKYIDLRQNKLEIFPTLPEN |
HMMSmart: SM00364 | 155-174 | Leucine-rich repeats, bacterial type | KESLTVLDVRDNKLQRLSDG |
HMMSmart: SM00369 IPR003591
|
156-177 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
ESLTVLDVRDNKLQRLSDGIPQ |
HMMPfam: PF00560 IPR001611
|
157-176 | LRR_1 Leucine-rich repeat
|
SLTVLDVRDNKLQRLSDGIP |
HMMSmart: SM00364 | 178-197 | Leucine-rich repeats, bacterial type | LYRLKTLDVTNNDLFDLPPG |
HMMSmart: SM00369 IPR003591
|
178-201 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LYRLKTLDVTNNDLFDLPPGFGIS |
HMMPfam: PF00560 IPR001611
|
180-198 | LRR_1 Leucine-rich repeat
|
RLKTLDVTNNDLFDLPPGF |
List of Contributions
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