PRGDB00073967 (Ppa.23)
| Ppa.23 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 22759867 (AB051839) |
| Gene Class | NL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Physcomitrella patens |
DNA Sequence
CTAATGTAAAAGACATGTACAATGCCTCATGCTTTGTTGAGTGCATTGAAAGTGGTGGTGATTGCTATACAACTTCTTGCAATATTTTGGAACAATTTAAAGTCAAATCAAAACCAAAGGATATAAAAGAAGCTCAAAAAATGTTGAAATCATTCTTAGAAGAGAACAAAACTATCTTGGTCTTTGATGATGTGAAGAATCAAAATCAAATTGAAGATGTTGTGCCTATGGATGACATATTTGCAAACAATGGTAGTACATTGATTGCAACAACTCGAGATTCAAAAGCAATGAAGCATTGTGGTAAAGAAGTTTATAAAATGAATGTTGAAGAACTTGGTGAAGGAGCAAGTATGAAGTTGTTTATTACATATTCTTGTGGCCAAGAAAATCTCCCCAATGAACTTAACGAGATTGCCAAAAAAATTGTAAGAGCTTGCAATGGCCTACCATTGAGTTTGAAAGTTATGGGAGCATTTTTAAAAGAGAATAAGAGATTAAGATGTTGGGAGCGAGCTTTACAAAAGTTAAAAAAGGGAAGAGAGTTGGATGGAGATGAAGACAATAGTAACTACAAGATTTGGAAGATATTAAGAGTGAGCTTTGAGAATTTTAAAGTTAAAGAAAAGAGTATGTTTTTGGACATATGTTG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ppa.23 | translated coding region predicted by ESTScan from UniGene Ppa.23 | XNVKDMYNASCFVECIESGGDCYTTSCNILEQFKVKSKPKDIKEAQKMLKSFLEENKTILVFDDVKNQNQIEDVVPMDDIFANNGSTLIATTRDSKAMKHCGKEVYKMNVEELGEGASMKLFITYSCGQENLPNELNEIAKKIVRACNGLPLSLKVMGAFLKENKRLRCWERALQKLKKGRELDGDEDNSNYKIWKILRVSFENFKVKEKSMFLDICX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR11017:SF20 | 7-216 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | YNASCFVECIESGGDCYTTSCNILEQFKVKSKPKDIKEAQKMLKSFLEENKTILVFDDVKNQNQIEDVVPMDDIFANNGSTLIATTRDSKAMKHCGKEVYKMNVEELGEGASMKLFITYSCGQENLPNELNEIAKKIVRACNGLPLSLKVMGAFLKENKRLRCWERALQKLKKGRELDGDEDNSNYKIWKILRVSFENFKVKEKSMFLDI |
| HMMPanther: PTHR11017 | 7-216 | FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | YNASCFVECIESGGDCYTTSCNILEQFKVKSKPKDIKEAQKMLKSFLEENKTILVFDDVKNQNQIEDVVPMDDIFANNGSTLIATTRDSKAMKHCGKEVYKMNVEELGEGASMKLFITYSCGQENLPNELNEIAKKIVRACNGLPLSLKVMGAFLKENKRLRCWERALQKLKKGRELDGDEDNSNYKIWKILRVSFENFKVKEKSMFLDI |
| HMMPfam: PF00931 IPR002182
|
7-216 | NB-ARC,NBS NB-ARC
|
YNASCFVECIESGGDCYTTSCNILEQFKVKSKPKDIKEAQKMLKSFLEENKTILVFDDVKNQNQIEDVVPMDDIFANNGSTLIATTRDSKAMKHCGKEVYKMNVEELGEGASMKLFITYSCGQENLPNELNEIAKKIVRACNGLPLSLKVMGAFLKENKRLRCWERALQKLKKGRELDGDEDNSNYKIWKILRVSFENFKVKEKSMFLDI |
| superfamily: SSF52540 | 28-177 | P-loop containing nucleoside triphosphate hydrolases | NILEQFKVKSKPKDIKEAQKMLKSFLEENKTILVFDDVKNQNQIEDVVPMDDIFANNGSTLIATTRDSKAMKHCGKEVYKMNVEELGEGASMKLFITYSCGQENLPNELNEIAKKIVRACNGLPLSLKVMGAFLKENKRLRCWERALQKL |
| FPrintScan: PR00364 IPR000767
|
52-66 | DISEASERSIST Disease resistance protein
|
FLEENKTILVFDDVK |
| FPrintScan: PR00364 IPR000767
|
147-161 | DISEASERSIST Disease resistance protein
|
CNGLPLSLKVMGAFL |
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