PRGDB00075179 (Pth.5118)

Pth.5118
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	224063574 (XM_002301176)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Populus trichocarpa
	Comment?

Populus trichocarpa predicted protein, mRNA

DNA Sequence

ATGATCCTTCAACAACACACTATCCTCTTCTTAGCAATCTTTGCTATTTCATTAATCGAAGCTCATGCTTCCATCAAGTTCAGATGCAACAGAACATGCGGCACCAACCATCTTCCATACCCTTTTGGATTCTCTGCCGATTGTGATATCCATTTAAATTGTAGCCCACATGGTGAAATGCTTATCAATGAGTTTCCAGTCCAGATTGTAGGCCAAAATTCAATAAAGATCATTCTTGAACCCAAATGTAACCGTCCTCTCGAAGCCCTCGACAATCTTTTTACCAAAAACTATGCTCCAAAATCAACAAACGCAATTCTTTTACACAACTGTACCTCTGCAGTTTCGCCATGCAATATACCTTCTATAAACGTGCAGACTCATTTCGAGTCACTTAAATGTTCAAATAACAGCAGCTTAAGTTGTTTCTCTAAGGAGGTTACAGCAAACGGTTTCTTTGATTATAACATGGCCAATATTAGCCAGTGCCAGTATTTTTTGTCATCAATATCGGCAGAGTCTTTCACTGGTTCTGGTGTTTCCTTAGAGATTCAGATGATGGAGCTATGGTGGTGGCTTCAAGGGGACTGCCGTTGCTCTAAGGATGCCATTTGTACTCAAGTTGAATCGCCTGCAGGGTCAGGATTTCGGTGCCAGTGCAGAGACGGGCTAATTGGTGATGGATATCTTGCCGGGGTTGGCTGCCGGAAAGGTAGTTTTCTCGATGTCAAAGCCTCTGCAGGTTGCAATCCTGCAAAGTATTTGTCTGGCCAATGTGGAGGAGGGTCTGGAGCTGCTGTTTTACTTGGAGGCGTTGTAGCTGGAGTAGGGGTCAGTCTGGGTCTATTTTGCTGTCTCGTACGGAGGAATTCCGCGTCAAAAGCCAAAAGCTTCAGAAAACTCCACCTATCTGAAGCTGCAGACATCAACATTCCCATCTATCCCTACAAAGAAATAGAGAAGGCCACAAATAGTTTCTCTGAGAAACAAAGGATTGGAACTGGGGCTTATGGAACTGTCTATGCTGGTAAACTCAACAGTGATTCATGGGTTGCCATTAAGAGGATCAAACATGGAGATATGGACAACATTGAGCAAGTGATGAACGAAATCAAGCTCATTTCTTCTGTGAGTCACCCGAATTTAGTCCGCCTCTTAGGTTGCTCCATAGAAAATGGTGAGCAAATTCTTGTCTATGAATTCATGCCGAATGGGACATTGTGCCAGCATTTACAAAGAGAGAGAGGTGATGGACTTGACTGGCCTGTTCGCCTCGCTATTGCTGCGGATACTGCTAAAGCTATAGCCCATCTCCACTCTGCTATGGATCCCCCGATATATCATAGAGATATCAAGTCGAGCAACATACTCTTAGACTACCACTTCAGGTCCAAAGTTGCAGATTTTGGTCTTTCCAGACATGGCATGACTGAAATATCACACATCTCTACTGTCCCGCAAGGAACTCCAGGCTACCTTGATCCTCAGTACCATCTAAACTTCCATCTTTCGGACAAAAGTGACGTTTATAGCTTTGGTGTTGTTCTCGTTGAGATCATAACAGCAAAGAAGGTGGTGGACTTTTCCAGGCCTCAGAATGAAGTGAATTTGGCTGCTCTTGCCACTGATAGGATTGGCAGGGGGAGATTGGATGAGATAATCGATCCGTTCCTTGATTTACATAGTGATGCTTGGACCTTTTCTTCAGTGCATAAAGTGGCAGAAGTGGCATTTAGGTGCCTTGCATTTCATAAAGACATGAGGCCTTCAATGATGGAAGTTGCAGCAGAACTAGAGCAAATACTGCTTAGTAGATGGGCTTCTTCAGAGGAAACAAATTGCGCAATCTCATTAGATTTTTCCCCTTGCTCTTCTTCATCTAATGTCAGCGACAAGCCTCTAAACTCCACAGTaaaaaaaaCAGAAATAGAGAGAAGAGGTTTGTTTGTGCTGCAGACACAGACCAGTAAAAAGTCAACGGAAAGGGCCAATCATAATTCACCTGTTTCTGTCCAAGATCCATGGTTAAGTGAAAAAAGCTCACCTTCTTCAAGCAATTTGCTAAATAACGTTATAGTTAAGTGA

Protein sequences

Name	Description	Sequence
Pth.5118	translated coding region predicted by ESTScan from UniGene Pth.5118	MILQQHTILFLAIFAISLIEAHASIKFRCNRTCGTNHLPYPFGFSADCDIHLNCSPHGEMLINEFPVQIVGQNSIKIILEPKCNRPLEALDNLFTKNYAPKSTNAILLHNCTSAVSPCNIPSINVQTHFESLKCSNNSSLSCFSKEVTANGFFDYNMANISQCQYFLSSISAESFTGSGVSLEIQMMELWWWLQGDCRCSKDAICTQVESPAGSGFRCQCRDGLIGDGYLAGVGCRKGSFLDVKASAGCNPAKYLSGQCGGGSGAAVLLGGVVAGVGVSLGLFCCLVRRNSASKAKSFRKLHLSEAADINIPIYPYKEIEKATNSFSEKQRIGTGAYGTVYAGKLNSDSWVAIKRIKHGDMDNIEQVMNEIKLISSVSHPNLVRLLGCSIENGEQILVYEFMPNGTLCQHLQRERGDGLDWPVRLAIAADTAKAIAHLHSAMDPPIYHRDIKSSNILLDYHFRSKVADFGLSRHGMTEISHISTVPQGTPGYLDPQYHLNFHLSDKSDVYSFGVVLVEIITAKKVVDFSRPQNEVNLAALATDRIGRGRLDEIIDPFLDLHSDAWTFSSVHKVAEVAFRCLAFHKDMRPSMMEVAAELEQILLSRWASSEETNCAISLDFSPCSSSSNVSDKPLNSTVKKTEIERRGLFVLQTQTSKKSTERANHNSPVSVQDPWLSEKSSPSSSNLLNNVIVK

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR24420:SF852	96-666	PTHR24420:SF852	KNYAPKSTNAILLHNCTSAVSPCNIPSINVQTHFESLKCSNNSSLSCFSKEVTANGFFDYNMANISQCQYFLSSISAESFTGSGVSLEIQMMELWWWLQGDCRCSKDAICTQVESPAGSGFRCQCRDGLIGDGYLAGVGCRKGSFLDVKASAGCNPAKYLSGQCGGGSGAAVLLGGVVAGVGVSLGLFCCLVRRNSASKAKSFRKLHLSEAADINIPIYPYKEIEKATNSFSEKQRIGTGAYGTVYAGKLNSDSWVAIKRIKHGDMDNIEQVMNEIKLISSVSHPNLVRLLGCSIENGEQILVYEFMPNGTLCQHLQRERGDGLDWPVRLAIAADTAKAIAHLHSAMDPPIYHRDIKSSNILLDYHFRSKVADFGLSRHGMTEISHISTVPQGTPGYLDPQYHLNFHLSDKSDVYSFGVVLVEIITAKKVVDFSRPQNEVNLAALATDRIGRGRLDEIIDPFLDLHSDAWTFSSVHKVAEVAFRCLAFHKDMRPSMMEVAAELEQILLSRWASSEETNCAISLDFSPCSSSSNVSDKPLNSTVKKTEIERRGLFVLQTQTSKKSTERANHN
HMMPanther: PTHR24420	96-666	PTHR24420,FAMILY NOT NAMED	KNYAPKSTNAILLHNCTSAVSPCNIPSINVQTHFESLKCSNNSSLSCFSKEVTANGFFDYNMANISQCQYFLSSISAESFTGSGVSLEIQMMELWWWLQGDCRCSKDAICTQVESPAGSGFRCQCRDGLIGDGYLAGVGCRKGSFLDVKASAGCNPAKYLSGQCGGGSGAAVLLGGVVAGVGVSLGLFCCLVRRNSASKAKSFRKLHLSEAADINIPIYPYKEIEKATNSFSEKQRIGTGAYGTVYAGKLNSDSWVAIKRIKHGDMDNIEQVMNEIKLISSVSHPNLVRLLGCSIENGEQILVYEFMPNGTLCQHLQRERGDGLDWPVRLAIAADTAKAIAHLHSAMDPPIYHRDIKSSNILLDYHFRSKVADFGLSRHGMTEISHISTVPQGTPGYLDPQYHLNFHLSDKSDVYSFGVVLVEIITAKKVVDFSRPQNEVNLAALATDRIGRGRLDEIIDPFLDLHSDAWTFSSVHKVAEVAFRCLAFHKDMRPSMMEVAAELEQILLSRWASSEETNCAISLDFSPCSSSSNVSDKPLNSTVKKTEIERRGLFVLQTQTSKKSTERANHN
superfamily: SSF56112 IPR011009	296-598	Kinase_like Protein kinase-like domain	KSFRKLHLSEAADINIPIYPYKEIEKATNSFSEKQRIGTGAYGTVYAGKLNSDSWVAIKRIKHGDMDNIEQVMNEIKLISSVSHPNLVRLLGCSIENGEQILVYEFMPNGTLCQHLQRERGDGLDWPVRLAIAADTAKAIAHLHSAMDPPIYHRDIKSSNILLDYHFRSKVADFGLSRHGMTEISHISTVPQGTPGYLDPQYHLNFHLSDKSDVYSFGVVLVEIITAKKVVDFSRPQNEVNLAALATDRIGRGRLDEIIDPFLDLHSDAWTFSSVHKVAEVAFRCLAFHKDMRPSMMEVAAEL
Gene3D: G3DSA:3.30.200.20	311-387	G3DSA:3.30.200.20	IPIYPYKEIEKATNSFSEKQRIGTGAYGTVYAGKLNSDSWVAIKRIKHGDMDNIEQVMNEIKLISSVSHPNLVRLLG
ProfileScan: PS50011 IPR000719	326-603	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	FSEKQRIGTGAYGTVYAGKLNSDSWVAIKRIKHGDMDNIEQVMNEIKLISSVSHPNLVRLLGCSIENGEQILVYEFMPNGTLCQHLQRERGDGLDWPVRLAIAADTAKAIAHLHSAMDPPIYHRDIKSSNILLDYHFRSKVADFGLSRHGMTEISHISTVPQGTPGYLDPQYHLNFHLSDKSDVYSFGVVLVEIITAKKVVDFSRPQNEVNLAALATDRIGRGRLDEIIDPFLDLHSDAWTFSSVHKVAEVAFRCLAFHKDMRPSMMEVAAELEQILL
HMMPfam: PF00069 IPR017442	327-594	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	SEKQRIGTGAYGTVYAGKLNSDSWVAIKRIKHGDMDNIEQVMNEIKLISSVSHPNLVRLLGCSIENGEQILVYEFMPNGTLCQHLQRERGDGLDWPVRLAIAADTAKAIAHLHSAMDPPIYHRDIKSSNILLDYHFRSKVADFGLSRHGMTEISHISTVPQGTPGYLDPQYHLNFHLSDKSDVYSFGVVLVEIITAKKVVDFSRPQNEVNLAALATDRIGRGRLDEIIDPFLDLHSDAWTFSSVHKVAEVAFRCLAFHKDMRPSMMEV
PatternScan: PS00107 IPR017441	332-354	PROTEIN_KINASE_ATP Protein kinase, ATP binding site	IGTGAYGTVYAGKLNSDSWVAIK
Gene3D: G3DSA:1.10.510.10	388-608	G3DSA:1.10.510.10	CSIENGEQILVYEFMPNGTLCQHLQRERGDGLDWPVRLAIAADTAKAIAHLHSAMDPPIYHRDIKSSNILLDYHFRSKVADFGLSRHGMTEISHISTVPQGTPGYLDPQYHLNFHLSDKSDVYSFGVVLVEIITAKKVVDFSRPQNEVNLAALATDRIGRGRLDEIIDPFLDLHSDAWTFSSVHKVAEVAFRCLAFHKDMRPSMMEVAAELEQILLSRWAS
PatternScan: PS00108 IPR008271	446-458	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	IYHRDIKSSNILL

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Analyses

Blast

Blast matches against Reference R-Genes. Show