PRGDB00075184 (Pth.5270)

Pth.5270
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	224060416 (XM_002300153)
Gene Class	N
Domain Type	NBS
Gene Species	Populus trichocarpa
	Comment?

Populus trichocarpa white-brown-complex ABC transporter family, mRNA

DNA Sequence

GGTGTTTTCTTGACTTGGGAGGATTTGTGGGTGACTGTTTCCAATGGGAAAAAAGGCAGTAAATCAATCCTTCAGGGCTTAACTGGTTATGCTCAGCCTGGAGAGCTTTTGGCTATAATGGGTCCTTCAGGCTGTGGCAAGTCAACACTTCTTGATACATTGGCAGGGAGACTGGGTTCAAACACACGACAAACAGGAGACATACTAATCAATGGCCACAAACAAAGGCTGGCTTATGGTACATCGGCTTATGTAACTCAAGATGAAACCTTAATCACAACATTAACAGTCAAAGAAGCTGTGTACTACTCAGCTCAGCTCCAATTGCCAGACTCAATGTCAAGGGCAGAAAAGAAAGAGCGAGCAGAGGTGACAATAAGAGAAATGGGGCTGCAAGATGCCATGAATACAAGAATTGGAGGATGGGGATCTAAAGGACTTAGTGGTGGTCAAAAGAGGAGAGTGAGCATTTGCATAGAGATACTAACACATCCGAAACTTCTCTTTCTTGATGAACCCACAAGTGGGCTTGATAGTGCAGCATCATATTATGTCATGAGCCGAATTGTTAGATTTGACCGCAAGGATGAAAATAGAAGAACTGTAATTGCATCCATTCATCAGCCTAGTGGTGAAGTCTTTCAGCTTTTCGACAGTCTTTGCCTGCTCAGTGCTGGTAAAGTAGTGTATTTTGGCCCAGCTTCTCAAGCAAATGAGTTTTTTGCCTTAAATGGCTTTCCTTGCCCGACTCTCCAGAACCCATCTGATCATTTCCTGAAAACCATAAACAAAGATTTCGAAACGGTATGTTGTCTTATCCAAGGTCTGGCTTTGCGGTATCTTTGGTTAATTATCAGATGGATACAGGATTGTGGGACATTAGAGGAAAGAAGCCATTCTAGCTTCCTTACTCAGTGTCTTGTGCTTACAAGAAGATCTTTCGTAAACATGTATCGAGATCTTGGGTACTATTGGTTGCGGGTCGCCATCTATGTCGCATTAGCATTAGGCCTTGCCACTTTGTTTTACAACCTTGGATCTGATAATGATTCAATTCAGGATAGAGGTTCTCTGCTAATGTTCATAGCTTCTTTCTTAACGTTCATGACAATCGGAGGATTCCCTTCTTTTGTGGAAGATATGAAGGTATTTGAAAGAGAAAGGTTAAATGGGCACTATGGTGCCACTGCTTTTGTTTTTGGCAACACATTCTCCGCCTTTCCATACCTGTTACTGATATCAGTAATTCCTGGAGCAATAACTTATTACCTTCCTGGACTTCACAAGGGATATGAACACTTCATATACTTTGTTTTAGTATTGTTTGCTTGCATGATGTTGGTGGAGAGCTTAATGATGACCGTTGCGAGTGTGGTGCCAAATTTTCTGATGGGAATAATAACAGGAGCTGGGATTCAAGCTTTCATGGTTCTAGGTGGGGGGTTCTTTAGATTGCCAAATGATCTCCCTCAGCCATTCTGGAAGTATCCCATGTACTACATTGCCTTCCATAAGTATGCCTACCAAGGAATGTTCAAGAACGAATTTGAAGGACTAACATTTCCTAGCAATCAAGCCGGAGGGCCACGGACGATTCCCGGGGAACAAATTCTGAGAGATCGATGGCAAGTGGAAATGGGTGTCTCCAAGTGGGTTGATCTTGCTATTTTGCTTGGAATGGTGGTTCTATACAGAATTTTGTTCTTGGTTATTATCAAGACCACAGAGAAGATAAAACCT

Protein sequences

Name	Description	Sequence
Pth.5270	translated coding region predicted by ESTScan from UniGene Pth.5270	GVFLTWEDLWVTVSNGKKGSKSILQGLTGYAQPGELLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPASQANEFFALNGFPCPTLQNPSDHFLKTINKDFETVCCLIQGLALRYLWLIIRWIQDCGTLEERSHSSFLTQCLVLTRRSFVNMYRDLGYYWLRVAIYVALALGLATLFYNLGSDNDSIQDRGSLLMFIASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSAFPYLLLISVIPGAITYYLPGLHKGYEHFIYFVLVLFACMMLVESLMMTVASVVPNFLMGIITGAGIQAFMVLGGGFFRLPNDLPQPFWKYPMYYIAFHKYAYQGMFKNEFEGLTFPSNQAGGPRTIPGEQILRDRWQVEMGVSKWVDLAILLGMVVLYRILFLVIIKTTEKIKP

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR19241:SF20	1-580	PTHR19241:SF20,ATP-BINDING CASSETTE TRANSPORTER PLANT	GVFLTWEDLWVTVSNGKKGSKSILQGLTGYAQPGELLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPASQANEFFALNGFPCPTLQNPSDHFLKTINKDFETVCCLIQGLALRYLWLIIRWIQDCGTLEERSHSSFLTQCLVLTRRSFVNMYRDLGYYWLRVAIYVALALGLATLFYNLGSDNDSIQDRGSLLMFIASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSAFPYLLLISVIPGAITYYLPGLHKGYEHFIYFVLVLFACMMLVESLMMTVASVVPNFLMGIITGAGIQAFMVLGGGFFRLPNDLPQPFWKYPMYYIAFHKYAYQGMFKNEFEGLTFPSNQAGGPRTIPGEQILRDRWQVEMGVSKWVDLAILLGMVVLYRILFLVIIKTTEKIKP
HMMPanther: PTHR19241	1-580	PTHR19241,ATP-BINDING CASSETTE TRANSPORTER	GVFLTWEDLWVTVSNGKKGSKSILQGLTGYAQPGELLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPASQANEFFALNGFPCPTLQNPSDHFLKTINKDFETVCCLIQGLALRYLWLIIRWIQDCGTLEERSHSSFLTQCLVLTRRSFVNMYRDLGYYWLRVAIYVALALGLATLFYNLGSDNDSIQDRGSLLMFIASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSAFPYLLLISVIPGAITYYLPGLHKGYEHFIYFVLVLFACMMLVESLMMTVASVVPNFLMGIITGAGIQAFMVLGGGFFRLPNDLPQPFWKYPMYYIAFHKYAYQGMFKNEFEGLTFPSNQAGGPRTIPGEQILRDRWQVEMGVSKWVDLAILLGMVVLYRILFLVIIKTTEKIKP
superfamily: SSF52540	3-254	SSF52540	FLTWEDLWVTVSNGKKGSKSILQGLTGYAQPGELLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPASQANEFFALNGFPCPTLQNP
ProfileScan: PS50893 IPR003439	4-250	ABC_TRANSPORTER_2 ABC transporter-like	LTWEDLWVTVSNGKKGSKSILQGLTGYAQPGELLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPASQANEFFALNGFPCPT
Gene3D: G3DSA:3.40.50.300	5-237	G3DSA:3.40.50.300	TWEDLWVTVSNGKKGSKSILQGLTGYAQPGELLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPASQA
HMMSmart: SM00382 IPR003593	33-235	AAA,NBS ATPase, AAA+ type, core	PGELLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPAS
HMMPfam: PF00005 IPR003439	48-175	ABC_tran ABC transporter-like	STLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTS
PatternScan: PS00211 IPR017871	147-161	ABC_TRANSPORTER_1 ABC transporter, conserved site	LSGGQKRRVSICIEI
HMMPfam: PF01061 IPR013525	304-516	ABC2_membrane ABC-2 type transporter	TQCLVLTRRSFVNMYRDLGYYWLRVAIYVALALGLATLFYNLGSDNDSIQDRGSLLMFIASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSAFPYLLLISVIPGAITYYLPGLHKGYEHFIYFVLVLFACMMLVESLMMTVASVVPNFLMGIITGAGIQAFMVLGGGFFRLPNDLPQPFWKYPMYYIAFHKYAYQGMFKNEF

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Analyses

Blast

Blast matches against Reference R-Genes. Show