PRGDB00075187 (Pth.5382)
| Pth.5382 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 224082491 (XM_002306678) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Populus trichocarpa |
DNA Sequence
ATGGACGAAACCGCCTCTTATGACCCGACTATAAACCACATCTCCATGGAAGAGCTAAAAGTCTCCACCAAGAACTTCTCCACCGATTTAATCATCGGCGATGGCAGTTTCGGCTTGGTTTATAAAGCTGCACTCTACAACGGCTCCACGGTTGCTATTAAAAAGCTTGACCCGGACGCTTTTCAAGGTTTTCGTGAGTTTCGCGCCGAGATGGAGACTCTAGGTCAGTTACGCCATGGAAATATTGTCAAGATTCTCGGGTATTGTGTTTCGGGCCGGGACCGGGTTTTAATTCTGGAGTTCGTTGAAAGAGGGAGTCTTGACCAGTGGATTCACGACACATCATCAACGGATAACGATCACTTTGATAAGTTCCCATTACCCTGGGAGACGAGGATCAAGATAGTTATGGGCGTGGCCAATGGGCTTGCTTATTTGCATGGGCTTGATACTCCCATTATTCATAGGGATATTAAGGCTAGTAACGTTTTGTTGGACGCGAGCTTTCAGGCCCATATCTCTGATTTTGGGCTTGCCCGTAGAATCGAGGCGTTGCGCTCGCATGTGTCCACGCAGGTTGCGGGGACTTTTGGGTACATGCCACCGGAGTATAAAGACGGTTTCATCGGAGCGACGGTGCAGGCAGACGTTTACAGTTTTGGGATTTTGATGTTTGAGATTGCGACCGCAGAGAGGCCGGATTTGCCTAAGGTGGTGGAGAAGAAAGAGGTGGGGTTTATTGAATGGGTTAAGAAGATGTTGGGGCAAGATCGTCATATGGAGATGTTGGATTGTAATATGCCGAAGGAGGGTTTGAGTGGAGATGATCAAGTTAAGGAATATTTTAGGATTGCTTCTTTGTGCACAGAGGAGTTTATGGGAGATAGGCCCGCCATGAGTGAAGTTGTGGATTTGTTGAAAAAACTTTCATAGGTTCTTCAAGATTTTACTTCTTGTAGTGGCCATGTATGACCAAGTTGAGTtaaataaaattaaaacgaaaaaaTATTAGTAATTTCTTC
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pth.5382 | translated coding region predicted by ESTScan from UniGene Pth.5382 | MDETASYDPTINHISMEELKVSTKNFSTDLIIGDGSFGLVYKAALYNGSTVAIKKLDPDAFQGFREFRAEMETLGQLRHGNIVKILGYCVSGRDRVLILEFVERGSLDQWIHDTSSTDNDHFDKFPLPWETRIKIVMGVANGLAYLHGLDTPIIHRDIKASNVLLDASFQAHISDFGLARRIEALRSHVSTQVAGTFGYMPPEYKDGFIGATVQADVYSFGILMFEIATAERPDLPKVVEKKEVGFIEWVKKMLGQDRHMEMLDCNMPKEGLSGDDQVKEYFRIASLCTEEFMGDRPAMSEVVDLLKKLS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Gene3D: G3DSA:3.30.200.20 | 7-102 | G3DSA:3.30.200.20 | YDPTINHISMEELKVSTKNFSTDLIIGDGSFGLVYKAALYNGSTVAIKKLDPDAFQGFREFRAEMETLGQLRHGNIVKILGYCVSGRDRVLILEFV |
| HMMPanther: PTHR24420:SF361 | 8-310 | PTHR24420:SF361,PROTEIN KINASE FAMILY PROTEIN | DPTINHISMEELKVSTKNFSTDLIIGDGSFGLVYKAALYNGSTVAIKKLDPDAFQGFREFRAEMETLGQLRHGNIVKILGYCVSGRDRVLILEFVERGSLDQWIHDTSSTDNDHFDKFPLPWETRIKIVMGVANGLAYLHGLDTPIIHRDIKASNVLLDASFQAHISDFGLARRIEALRSHVSTQVAGTFGYMPPEYKDGFIGATVQADVYSFGILMFEIATAERPDLPKVVEKKEVGFIEWVKKMLGQDRHMEMLDCNMPKEGLSGDDQVKEYFRIASLCTEEFMGDRPAMSEVVDLLKKLS |
| HMMPanther: PTHR24420 | 8-310 | PTHR24420,FAMILY NOT NAMED | DPTINHISMEELKVSTKNFSTDLIIGDGSFGLVYKAALYNGSTVAIKKLDPDAFQGFREFRAEMETLGQLRHGNIVKILGYCVSGRDRVLILEFVERGSLDQWIHDTSSTDNDHFDKFPLPWETRIKIVMGVANGLAYLHGLDTPIIHRDIKASNVLLDASFQAHISDFGLARRIEALRSHVSTQVAGTFGYMPPEYKDGFIGATVQADVYSFGILMFEIATAERPDLPKVVEKKEVGFIEWVKKMLGQDRHMEMLDCNMPKEGLSGDDQVKEYFRIASLCTEEFMGDRPAMSEVVDLLKKLS |
| superfamily: SSF56112 IPR011009
|
11-306 | Kinase_like Protein kinase-like domain
|
INHISMEELKVSTKNFSTDLIIGDGSFGLVYKAALYNGSTVAIKKLDPDAFQGFREFRAEMETLGQLRHGNIVKILGYCVSGRDRVLILEFVERGSLDQWIHDTSSTDNDHFDKFPLPWETRIKIVMGVANGLAYLHGLDTPIIHRDIKASNVLLDASFQAHISDFGLARRIEALRSHVSTQVAGTFGYMPPEYKDGFIGATVQADVYSFGILMFEIATAERPDLPKVVEKKEVGFIEWVKKMLGQDRHMEMLDCNMPKEGLSGDDQVKEYFRIASLCTEEFMGDRPAMSEVVDLL |
| ProfileScan: PS50011 IPR000719
|
26-310 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSTDLIIGDGSFGLVYKAALYNGSTVAIKKLDPDAFQGFREFRAEMETLGQLRHGNIVKILGYCVSGRDRVLILEFVERGSLDQWIHDTSSTDNDHFDKFPLPWETRIKIVMGVANGLAYLHGLDTPIIHRDIKASNVLLDASFQAHISDFGLARRIEALRSHVSTQVAGTFGYMPPEYKDGFIGATVQADVYSFGILMFEIATAERPDLPKVVEKKEVGFIEWVKKMLGQDRHMEMLDCNMPKEGLSGDDQVKEYFRIASLCTEEFMGDRPAMSEVVDLLKKLS |
| HMMPfam: PF07714 IPR001245
|
31-304 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
IIGDGSFGLVYKAALYNGSTVAIKKLDPDAFQGFREFRAEMETLGQLRHGNIVKILGYCVSGRDRVLILEFVERGSLDQWIHDTSSTDNDHFDKFPLPWETRIKIVMGVANGLAYLHGLDTPIIHRDIKASNVLLDASFQAHISDFGLARRIEALRSHVSTQVAGTFGYMPPEYKDGFIGATVQADVYSFGILMFEIATAERPDLPKVVEKKEVGFIEWVKKMLGQDRHMEMLDCNMPKEGLSGDDQVKEYFRIASLCTEEFMGDRPAMSEVVD |
| PatternScan: PS00107 IPR017441
|
32-55 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
IGDGSFGLVYKAALYNGSTVAIKK |
| Gene3D: G3DSA:1.10.510.10 | 103-306 | G3DSA:1.10.510.10 | ERGSLDQWIHDTSSTDNDHFDKFPLPWETRIKIVMGVANGLAYLHGLDTPIIHRDIKASNVLLDASFQAHISDFGLARRIEALRSHVSTQVAGTFGYMPPEYKDGFIGATVQADVYSFGILMFEIATAERPDLPKVVEKKEVGFIEWVKKMLGQDRHMEMLDCNMPKEGLSGDDQVKEYFRIASLCTEEFMGDRPAMSEVVDLL |
| PatternScan: PS00108 IPR008271
|
153-165 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDIKASNVLL |
List of Contributions
There has not been any contribution yet.
