PRGDB00075513 (Ptp.192)

Ptp.192
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	3852896 (AI161611)
Gene Class	TNL
Domain Type	NBS, TIR, LRR
Gene Species	Populus tremula x Populus tremuloides
	Comment?

A003P73U Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA 5', mRNA sequence

DNA Sequence

TTTCAAAGAAAGCCGTTGATTACTGTGGAGGACTTCCTTTAGCTCTTCAGGTTATAGGAGCTCTTCTGTACAGGAAAAACAGAGGTGAATGGGAACGTGAAATTGACAACTTGAGCAGAATTCCAAACCAAGATATTCAAGGAAAGCTCTAATAAGTTATGACGCACTTGATGGTGAACTACAAAGAGCATTCCTTGATATTGCATGCTTCTTTATTGGTATAGAGAGAGAATACGTCGCAAAAGTGCTAGGAGTCCGTTGCCGTCCCAATCCAGAAGTTGTTTGGAACTCTCAGTGAAAGGTCTCGATTCCATTTCAGAGTGTACATTAAAGATGAAGGCAGTTATTTGGAGAGTGGTAGCCNGCATGATCTATTACGAGACTGGGAAGGGAGGTTGTTGTAAAGCGTCTCCCTTGCATCTTGGAAAAAGGACAGANTTGGGATTAAGACGTGCTGGGATGTACTGACCACCGGAGGGTACGGTGTTGTAGAGGGCTTGCCTGATGTCAGAGCCTCAGAGCTAA

Protein sequences

Name	Description	Sequence
Ptp.192	translated coding region predicted by ESTScan from UniGene Ptp.192	XSKKAVDYCGGLPLALQVIGALLYRKNRGEWEREIDNLSRIPNQDIQXKALISYDALDGELQRAFLDIACFFIGIEREYVAKVLGVRCRPNPEVVGTLSERSRFHFRVYIKDEGSYLESGSXHDLLRDWEGRLLXSVSLASWKKDRXGIKTCWDVLTTGGYGVVEGLPDVRASELX

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11017:SF130	2-84	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	SKKAVDYCGGLPLALQVIGALLYRKNRGEWEREIDNLSRIPNQDIQXKALISYDALDGELQRAFLDIACFFIGIEREYVAKVL
HMMPanther: PTHR11017	2-84	FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	SKKAVDYCGGLPLALQVIGALLYRKNRGEWEREIDNLSRIPNQDIQXKALISYDALDGELQRAFLDIACFFIGIEREYVAKVL
HMMPfam: PF00931 IPR002182	3-76	NB-ARC,NBS NB-ARC	KKAVDYCGGLPLALQVIGALLYRKNRGEWEREIDNLSRIPNQDIQXKALISYDALDGELQRAFLDIACFFIGIE

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Analyses

Blast

Blast matches against Reference R-Genes. Show