PRGDB00075525 (Ptp.2196)
| Ptp.2196 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 38594692 (CK110367) |
| Gene Class | RLK |
| Domain Type | Ser-Thr Kinase, Receptor-Like Kinase |
| Gene Species | Populus tremula x Populus tremuloides |
DNA Sequence
GTCCGGGGTCTATCGAGTTTTATTTTTAAGATGCAAAACCTGGTTGGAAGAAAAGAATCCAAATTGCCTTTGGAGTTGCAAGAGGACTTTTGTACTTGCATGAAGAGTGCAGCAATCAGATTATCCATTGTGATATCAAGCCCCAGAATATACTTCTGGATGAATATTACAATGCAAGGATATCTGACTTTGGTTTGGCAAAGCTCTTGTTGCTGGATCAGAGCCAGACCCATACAGCCATCAGAGGGACAAAAGGGTATGTTGCACCTGAATGGTTCAGGAACCTGCCCGTCACTGTGAAGGTGGATGTGTATAGCTATGGTGTACTTCTGCTAGAGATCATTTGTTGCAGAAGAAATGTGGATAGCAAAGCAACCATAGAAGAACAGGCAATTTTAACAGACTGGGCATATGACTGTTATCGTGAAGGGACATTGGATGCCCTCGTTGGATCTGATACCGGAGCCTTAGATGACATAGAAAAGCTAGAGAGGTTTATGATGATTGCTTTCTGGTGTATTCAGGAAGATCCATCTCTCCGACCCACCATGAGGAAAGTTACACAGATGCTTGAAGGAGTAGTTGAAGTGCCTGTTCCACCATGTCCATGCCTTCTTTACGCAGCAAGTTAAATCAGCTTTGTAGCGTTGCCAGCCCTATTATCTTTCTCTTGTAACCTTTTCTTGATTATTGGCTTCTTCACCAGTGTCTTGTCCACCATAAGTTCTTCACTTTAAGATTATTAGTGCTTGTCGTTTCTGTTTTGCCTGCTACTACAAAAGGCAGCTCTGTCATAAGTAACGCTGTATTCGATGCATTAGTT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ptp.2196 | translated coding region predicted by ESTScan from UniGene Ptp.2196 | XPGSIEFYFXDAKPGWKKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQMLEGVVEVPVPPCPCLLYAAS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| ProfileScan: PS50011 IPR000719
|
1-195 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
XPGSIEFYFXDAKPGWKKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQMLEGVV |
| HMMSmart: SM00220 IPR002290
|
2-191 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
PGSIEFYFXDAKPGWKKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQML |
| HMMSmart: SM00219 IPR020635
|
3-191 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
GSIEFYFXDAKPGWKKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQML |
| superfamily: SSF56112 IPR011009
|
3-191 | Protein kinase-like (PK-like) Protein kinase-like domain
|
GSIEFYFXDAKPGWKKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQML |
| HMMPanther: PTHR24420 | 13-203 | FAMILY NOT NAMED,FAMILY NOT NAMED | KPGWKKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQMLEGVVEVPVPPCP |
| HMMPanther: PTHR24420:SF815 | 13-203 | RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1); CARBOHYDRATE BINDING / KINASE | KPGWKKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQMLEGVVEVPVPPCP |
| Gene3D: G3DSA:1.10.510.10 | 15-192 | no description | GWKKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQMLE |
| HMMPfam: PF00069 IPR000719
|
17-189 | Pkinase,Ser-thr Protein kinase, catalytic domain
|
KKRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGVLLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFMMIAFWCIQEDPSLRPTMRKVTQ |
| PatternScan: PS00108 IPR008271
|
41-53 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHCDIKPQNILL |
| Seg: seg | 194-204 | seg | VVEVPVPPCPC |
List of Contributions
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