PRGDB00077252 (Stu.11942)
| Stu.11942 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 21377774 (BQ518905) |
| Gene Class | NL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Solanum tuberosum |
DNA Sequence
GAGCCCACAAAACTTCTTTTCCATTCTTTCTAAGAGGGAAACTATAGAGTTAACACAATCATATAGCAATTATTAATCTCTCTATTTGCACTCTAAGTTTTACATGGAGAAGATCGAGTTAACTACTTCTCGATGCTATTTTTCATCGAATGATGAGGAATTTGTGGGGTTTAAGGAGGATGTAGAACAGATCATTCAGAAATTGACTAAAGGAACAAAAGAACGCAAAGTTATATCGATTGTTGGAATGGCAGGACTAGGCAAAACAACTTTGGCTAGAAAGGTGTACAACAATCATTCTGTTGCTGATCACTTTGACGTTCACGCATTTTGTATTGTTTCACAAACATATAGCATCAGGAAGCTATTGTTTGAGATTCTTAAACAAGCCACGGGTGAAAAACGTGACATGATCAAAGAGGATGAGGACGTTGCAGATACGTTGAGGAAGGCACTTTATGGTAAGAGATACCTCATTGTTTTAGATGATATGTGGAACTATGAGGCATGGGAAGATTTGCAATCATGTTTCCCTTGTGTGGGAAAGAGTAGTAGAATTATGGTAACAACTCGCATTCAAGAGGTGCTATTAAGATGAGTGATCCTCATTTTCTTGGATCCT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Stu.11942 | translated coding region predicted by ESTScan from UniGene Stu.11942 | MEKIELTTSRCYFSSNDEEFVGFKEDVEQIIQKLTKGTKERKVISIVGMAGLGKTTLARKVYNNHSVADHFDVHAFCIVSQTYSIRKLLFEILKQATGEKRDMIKEDEDVADTLRKALYGKRYLIVLDDMWNYEAWEDLQSCFPCVGKSSRIMVTTRIQEVLLRXVILIFLDP |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52540 | 3-164 | P-loop containing nucleoside triphosphate hydrolases | KIELTTSRCYFSSNDEEFVGFKEDVEQIIQKLTKGTKERKVISIVGMAGLGKTTLARKVYNNHSVADHFDVHAFCIVSQTYSIRKLLFEILKQATGEKRDMIKEDEDVADTLRKALYGKRYLIVLDDMWNYEAWEDLQSCFPCVGKSSRIMVTTRIQEVLLR |
| HMMPanther: PTHR23155:SF121 | 14-153 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | SSNDEEFVGFKEDVEQIIQKLTKGTKERKVISIVGMAGLGKTTLARKVYNNHSVADHFDVHAFCIVSQTYSIRKLLFEILKQATGEKRDMIKEDEDVADTLRKALYGKRYLIVLDDMWNYEAWEDLQSCFPCVGKSSRIM |
| HMMPanther: PTHR23155 | 14-153 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | SSNDEEFVGFKEDVEQIIQKLTKGTKERKVISIVGMAGLGKTTLARKVYNNHSVADHFDVHAFCIVSQTYSIRKLLFEILKQATGEKRDMIKEDEDVADTLRKALYGKRYLIVLDDMWNYEAWEDLQSCFPCVGKSSRIM |
| Gene3D: G3DSA:3.40.50.300 | 18-137 | no description | EEFVGFKEDVEQIIQKLTKGTKERKVISIVGMAGLGKTTLARKVYNNHSVADHFDVHAFCIVSQTYSIRKLLFEILKQATGEKRDMIKEDEDVADTLRKALYGKRYLIVLDDMWNYEAWE |
| HMMPfam: PF00931 IPR002182
|
24-163 | NB-ARC,NBS NB-ARC
|
KEDVEQIIQKLTKGTKERKVISIVGMAGLGKTTLARKVYNNHSVADHFDVHAFCIVSQTYSIRKLLFEILKQATGEKRDMIKEDEDVADTLRKALYGKRYLIVLDDMWNYEAWEDLQSCFPCVGKSSRIMVTTRIQEVLL |
| FPrintScan: PR00364 IPR000767
|
43-58 | DISEASERSIST Disease resistance protein
|
VISIVGMAGLGKTTLA |
| FPrintScan: PR00364 IPR000767
|
117-131 | DISEASERSIST Disease resistance protein
|
ALYGKRYLIVLDDMW |
List of Contributions
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