PRGDB00078130 (Tcc.179)

Tcc.179
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	212321503 (CU534434)
Gene Class	Unknown
Domain Type
Gene Species	Theobroma cacao
	Comment?

CU534434 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK2YE14FM1, mRNA sequence

DNA Sequence

CGGGGATCTCATTGCCATTTGTAAATACACTTAGGTTTGTTTCCCCAGAGTTATTTGGTTTTCTCTTCTCTTTCGAAAGGTTGGATAAGGTTTCCAAAACAATGAATCATGTTCTGCATTTCATGTTTGGAATTTTTGGAAATGCCACTGCTGCGTTCCTCTTCTTGTCTCCAACGATTACATTTTGGAGGGTCATTAAAAGCAAGTCCACAGAGCAGTTCTCTGGAATTCCCTACGTGATGACCTTGCTCAACTGTCTCCTCTCCGCCTGGTATGGCCTTCCCTTTGTATCAGAAAACAACATTCTGGTTGTTACAATCAATGGGGCAGGCTCCGGACTTGAGTTCATTTATGTGTTGATCTTCATCTACCATGCACCAAAGAAGGAGAAGATTAAAGTCCTTGCGCTCTTCGGTTTTGTACTCGCTGTTTTCTCTGCTGTGGCCCTGGTCTCTGTCTTGGCCCTGCATGGTACCGGCAGAAAGGTCTTTTGCGGCGTTGTTGCTGCCGTTTTCTCTGTTGCCATGTATGCCTCACCTCTTTCAATCATGAGACTGGTGATCAAAACTAAGAGCGTGGAGTTCATGCCATTCTTCTTGTCACTATTTGTATTCCTCTGTGGTACATCATGGTTTGTTTATGGTATTCTTGGTCGTGATGCTTTTATTGCTGTCCCGAATGGTTTTGGGTGTACCCTGGGGACTATGCAGCTCATTCTTTACTCCATCTACCACAAGAAC

Protein sequences

Name	Description	Sequence
Tcc.179	translated coding region predicted by ESTScan from UniGene Tcc.179	MNHVLHFMFGIFGNATAAFLFLSPTITFWRVIKSKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSENNILVVTINGAGSGLEFIYVLIFIYHAPKKEKIKVLALFGFVLAVFSAVALVSVLALHGTGRKVFCGVVAAVFSVAMYASPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFVYGILGRDAFIAVPNGFGCTLGTMQLILYSIYHKN

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10791 IPR004316	1-210	RAG1-ACTIVATING PROTEIN 1 RAG1-activating protein-1-related	MNHVLHFMFGIFGNATAAFLFLSPTITFWRVIKSKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSENNILVVTINGAGSGLEFIYVLIFIYHAPKKEKIKVLALFGFVLAVFSAVALVSVLALHGTGRKVFCGVVAAVFSVAMYASPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFVYGILGRDAFIAVPNGFGCTLGTMQLILYSIY
HMMPfam: PF03083 IPR004316	8-95	MtN3_slv RAG1-activating protein-1-related	MFGIFGNATAAFLFLSPTITFWRVIKSKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSENNILVVTINGAGSGLEFIYVLIFIYHAPKK
Seg: seg	100-122	seg	VLALFGFVLAVFSAVALVSVLAL
HMMPfam: PF03083 IPR004316	131-212	MtN3_slv RAG1-activating protein-1-related	CGVVAAVFSVAMYASPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFVYGILGRDAFIAVPNGFGCTLGTMQLILYSIYHK

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Analyses

Blast

Blast matches against Reference R-Genes. Show