PRGDB00078136 (Tcc.1299)

Tcc.1299
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	212314948 (CU619362)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Theobroma cacao
	Comment?

CU619362 STEMS_KZ0AAA Theobroma cacao cDNA clone KZ0AAA14YI09FM1, mRNA sequence

DNA Sequence

ttttttttttttttttCCAAAAAGGCAACTGAAATGGAGATTGGCGTCATATATATCAAAAGCCTTTGAGAATTTAGCACAAGAAATGTAGGAATTTTGTAAGCAAGCACTGCCATTTTGCATACATCTCCCAATTTTACTCTAAAGCTACATTGATTCATTATCTTGCTTGCTGAATATCAAAGGGAAATCATCGAACTGTTCTGAGAAACCAAGTTCCTCAGCCATGCTTTTCAATGACTGGTAAACCTGGTACATGGACCATCTTTCCTTTGGCCGAGCAACCACACAATTACATGCAATTTTGAGGAACTGCAAAATTTCCTCATCATGCCCCTTTCCACGGAGAGAATTGTCGATGGCATCCTTGATTCTGCCAGAGCTAGAGAGATGATTTACCCAATCCACCAAATTACCCTTAAATCCTTCTTCACCTGCATTAATTTCTAAGGGTTTTTGCCTAGTTACCAATTCCAGAAAAACTACACCAAATCCATACACATCCCCTTTAAGTGTAGTGACCATAGTGCTTGAGTACTCTGGAGCTATATAACCAAATTCCCCTAAGTCTCCATTCTCAAAACTAGTCCCATTAACATCTGAGGAAGTCATGAGCCCTGCCAATCCAAAATCCATTATCCTAGCATCA

Protein sequences

Name	Description	Sequence
Tcc.1299	translated coding region predicted by ESTScan from UniGene Tcc.1299	XDARIMDFGLAGLMTSSDVNGTSFENGDLGEFGYIAPEYSSTMVTTLKGDVYGFGVVFLELVTRQKPLEINAGEEGFKGNLVDWVNHLSSSGRIKDAIDNSLRGKGHDEEILQFLKIACNCVVARPKERWSMYQVYQSLKSMAEELGFSEQFDDFPLIFSKQDNESM

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-142	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	XDARIMDFGLAGLMTSSDVNGTSFENGDLGEFGYIAPEYSSTMVTTLKGDVYGFGVVFLELVTRQKPLEINAGEEGFKGNLVDWVNHLSSSGRIKDAIDNSLRGKGHDEEILQFLKIACNCVVARPKERWSMYQVYQSLKSM
HMMPanther: PTHR24420:SF477	2-165	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	DARIMDFGLAGLMTSSDVNGTSFENGDLGEFGYIAPEYSSTMVTTLKGDVYGFGVVFLELVTRQKPLEINAGEEGFKGNLVDWVNHLSSSGRIKDAIDNSLRGKGHDEEILQFLKIACNCVVARPKERWSMYQVYQSLKSMAEELGFSEQFDDFPLIFSKQDNE
HMMPanther: PTHR24420	2-165	FAMILY NOT NAMED,FAMILY NOT NAMED	DARIMDFGLAGLMTSSDVNGTSFENGDLGEFGYIAPEYSSTMVTTLKGDVYGFGVVFLELVTRQKPLEINAGEEGFKGNLVDWVNHLSSSGRIKDAIDNSLRGKGHDEEILQFLKIACNCVVARPKERWSMYQVYQSLKSMAEELGFSEQFDDFPLIFSKQDNE
Gene3D: G3DSA:1.10.510.10	3-139	no description	ARIMDFGLAGLMTSSDVNGTSFENGDLGEFGYIAPEYSSTMVTTLKGDVYGFGVVFLELVTRQKPLEINAGEEGFKGNLVDWVNHLSSSGRIKDAIDNSLRGKGHDEEILQFLKIACNCVVARPKERWSMYQVYQSL
superfamily: SSF56112 IPR011009	3-139	Protein kinase-like (PK-like) Protein kinase-like domain	ARIMDFGLAGLMTSSDVNGTSFENGDLGEFGYIAPEYSSTMVTTLKGDVYGFGVVFLELVTRQKPLEINAGEEGFKGNLVDWVNHLSSSGRIKDAIDNSLRGKGHDEEILQFLKIACNCVVARPKERWSMYQVYQSL
HMMPfam: PF00069 IPR017442	3-138	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	ARIMDFGLAGLMTSSDVNGTSFENGDLGEFGYIAPEYSSTMVTTLKGDVYGFGVVFLELVTRQKPLEINAGEEGFKGNLVDWVNHLSSSGRIKDAIDNSLRGKGHDEEILQFLKIACNCVVARPKERWSMYQVYQS

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Analyses

Blast

Blast matches against Reference R-Genes. Show