PRGDB00078144 (Tcc.2941)

Tcc.2941
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	212313227 (CU534611)
Gene Class	Unknown
Domain Type
Gene Species	Theobroma cacao
	Comment?

CU534611 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK3YL14FM1, mRNA sequence

DNA Sequence

CGGGGATCCCGAACTTTCAACACTCCATCAACAGTCACTCAATCTCCAGTGCTGGAGCAGCGAAGATAATCGGTTTAGAGATGTCGACCCATGGGGAGGTAGTGTGCGTCACCGGAGCCAGCGGCAGCATTGGCTCTTGGCTCGTCAAACTCCTCCTGGCTCGCGGCTACACCGTCCACGGGACCGTCAAAAATCTCAGGGATGAGAAAGAAACGAAGCATCTGGAATCTTTAGAAGGAGCGGAGTCACGTCTCCGCCTCTTCCAGATCGATCTCCTCGATTATGATTCGATCGCCACCGCGATCAACGGCTGTGCTGGCGTCTTCCACCTCGCCTCTCCCTGCATCGTCGACCCAGTTCACGACCCTCAGAAGGAGCTTTTGGATCCTGCAATTAAAGGAACGCTCAATGTACTGACAGCTGCCAAAGAGCTCGGCGTTAAGCGCGTGGTCGTCACGTCTTCCATCTCCGCCATTACGCCCAGCCCGAACTGGCCAGCAGATAAGATCAAAGCAGAGGATTGTTGGTCTGATATCGAGTACTGCAAGCACAATGAATTATGGTATTCAATTTCTAAAACACTAGCTGAGAAGGCGGCATGGGAATTCTCCAAGGAGAAAGGTTTGGATGTGGTGGTGGTTAATCCAGGCACTGTGATGGGTCCTAATATTCCTCCAACCCTTAATGCTAGCATGTTTCTGTTGTTACGCCTTCTGCAAGGCTGCACAGACACATATCAGGACATTTTCATGGGATCTGTCC

Protein sequences

Name	Description	Sequence
Tcc.2941	translated coding region predicted by ESTScan from UniGene Tcc.2941	XGIPNFQHSINSHSISSAGAAKIIGLEMSTHGEVVCVTGASGSIGSWLVKLLLARGYTVHGTVKNLRDEKETKHLESLEGAESRLRLFQIDLLDYDSIATAINGCAGVFHLASPCIVDPVHDPQKELLDPAIKGTLNVLTAAKELGVKRVVVTSSISAITPSPNWPADKIKAEDCWSDIEYCKHNELWYSISKTLAEKAAWEFSKEKGLDVVVVNPGTVMGPNIPPTLNASMFLLLRLLQGCTDTYQDIFMGSVX

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10366:SF9	17-254	CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE	SAGAAKIIGLEMSTHGEVVCVTGASGSIGSWLVKLLLARGYTVHGTVKNLRDEKETKHLESLEGAESRLRLFQIDLLDYDSIATAINGCAGVFHLASPCIVDPVHDPQKELLDPAIKGTLNVLTAAKELGVKRVVVTSSISAITPSPNWPADKIKAEDCWSDIEYCKHNELWYSISKTLAEKAAWEFSKEKGLDVVVVNPGTVMGPNIPPTLNASMFLLLRLLQGCTDTYQDIFMGSV
HMMPanther: PTHR10366	17-254	FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE	SAGAAKIIGLEMSTHGEVVCVTGASGSIGSWLVKLLLARGYTVHGTVKNLRDEKETKHLESLEGAESRLRLFQIDLLDYDSIATAINGCAGVFHLASPCIVDPVHDPQKELLDPAIKGTLNVLTAAKELGVKRVVVTSSISAITPSPNWPADKIKAEDCWSDIEYCKHNELWYSISKTLAEKAAWEFSKEKGLDVVVVNPGTVMGPNIPPTLNASMFLLLRLLQGCTDTYQDIFMGSV
superfamily: SSF51735	28-249	NAD(P)-binding Rossmann-fold domains	MSTHGEVVCVTGASGSIGSWLVKLLLARGYTVHGTVKNLRDEKETKHLESLEGAESRLRLFQIDLLDYDSIATAINGCAGVFHLASPCIVDPVHDPQKELLDPAIKGTLNVLTAAKELGVKRVVVTSSISAITPSPNWPADKIKAEDCWSDIEYCKHNELWYSISKTLAEKAAWEFSKEKGLDVVVVNPGTVMGPNIPPTLNASMFLLLRLLQGCTDTYQDI
Gene3D: G3DSA:3.40.50.720 IPR016040	34-241	no description NAD(P)-binding domain	VVCVTGASGSIGSWLVKLLLARGYTVHGTVKNLRDEKETKHLESLEGAESRLRLFQIDLLDYDSIATAINGCAGVFHLASPCIVDPVHDPQKELLDPAIKGTLNVLTAAKELGVKRVVVTSSISAITPSPNWPADKIKAEDCWSDIEYCKHNELWYSISKTLAEKAAWEFSKEKGLDVVVVNPGTVMGPNIPPTLNASMFLLLRLLQG
HMMPfam: PF01370 IPR001509	35-230	Epimerase NAD-dependent epimerase/dehydratase	VCVTGASGSIGSWLVKLLLARGYTVHGTVKNLRDEKETKHLESLEGAESRLRLFQIDLLDYDSIATAINGCAGVFHLASPCIVDPVHDPQKELLDPAIKGTLNVLTAAKELGVKRVVVTSSISAITPSPNWPADKIKAEDCWSDIEYCKHNELWYSISKTLAEKAAWEFSKEKGLDVVVVNPGTVMGPNIPPTLNA

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Analyses

Blast

Blast matches against Reference R-Genes. Show