PRGDB00078146 (Tcc.3270)

Tcc.3270
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	212312366 (CU619496)
Gene Class	Unknown
Domain Type
Gene Species	Theobroma cacao
	Comment?

CU619496 STEMS_KZ0AAA Theobroma cacao cDNA clone KZ0AAA15YB07FM1, mRNA sequence

DNA Sequence

CGGGGACAGTCACCAGGAAACAAGAGAGAGATGAGTGAAGCAGGCAAGGTGGTGTGTGTAACGGGAGCATCAGGTTACATAGCCTCATGGCTGGTTAAGTTTTTACTCCAACGTGGTTACACCGTCAAAGCCACTGTTCGTGACCCAAGTGATCCAAAGAAAACAGAGCACTTACTTGCGCTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAGGCAGAGCTTCTGGATGAGGGAGCTTTTGATTCAGTAGTTGATGGATGTGTAGGAGTTTTCCACACAGCATCTCCTTTTTATCACAATATCAAGGATCCTCAGGCTGAAATGATTGACCCAGCTGTAAAGGGAACACTTAATGTTCTTAGGTCATGTGCTAAAGTTCCATCTATTAAACGGGTGGTTATAACATCCTCAGTTGCAGCTGTTGTGTATAATGGAAGGCCTCTGGGCCCTGATGTTAAAGTTGATGAGACTTGGTTCTCTGATCCCACTTTTTGTGAGAAATCAAAGCTTTGGTATATGCTTTCTAAGACGTTAGCTGAGGAGGCTGCTTGGAAGTATGCAAAAGATAATGGAATTGACATGGTTACAGTAAACCCAGGATTGGTGATTGGACCTCTTTTACAGCCGACCATTAATGCAAGTGTGGAGCCAATATTGAAGCTTATAAATGGGGCTGAAACATTTCCAAATACAAATTACAGATTGATAGACGTTAGAGATGTTGCAAACGCACATATACTAGCATATGAGAATTCTTCAGCTTGTGGA

Protein sequences

Name	Description	Sequence
Tcc.3270	translated coding region predicted by ESTScan from UniGene Tcc.3270	RGQSPGNKREMSEAGKVVCVTGASGYIASWLVKFLLQRGYTVKATVRDPSDPKKTEHLLALDGAKERLHLFKAELLDEGAFDSVVDGCVGVFHTASPFYHNIKDPQAEMIDPAVKGTLNVLRSCAKVPSIKRVVITSSVAAVVYNGRPLGPDVKVDETWFSDPTFCEKSKLWYMLSKTLAEEAAWKYAKDNGIDMVTVNPGLVIGPLLQPTINASVEPILKLINGAETFPNTNYRLIDVRDVANAHILAYENSSACG

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10366:SF9	1-257	CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE	RGQSPGNKREMSEAGKVVCVTGASGYIASWLVKFLLQRGYTVKATVRDPSDPKKTEHLLALDGAKERLHLFKAELLDEGAFDSVVDGCVGVFHTASPFYHNIKDPQAEMIDPAVKGTLNVLRSCAKVPSIKRVVITSSVAAVVYNGRPLGPDVKVDETWFSDPTFCEKSKLWYMLSKTLAEEAAWKYAKDNGIDMVTVNPGLVIGPLLQPTINASVEPILKLINGAETFPNTNYRLIDVRDVANAHILAYENSSACG
HMMPanther: PTHR10366	1-257	FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE	RGQSPGNKREMSEAGKVVCVTGASGYIASWLVKFLLQRGYTVKATVRDPSDPKKTEHLLALDGAKERLHLFKAELLDEGAFDSVVDGCVGVFHTASPFYHNIKDPQAEMIDPAVKGTLNVLRSCAKVPSIKRVVITSSVAAVVYNGRPLGPDVKVDETWFSDPTFCEKSKLWYMLSKTLAEEAAWKYAKDNGIDMVTVNPGLVIGPLLQPTINASVEPILKLINGAETFPNTNYRLIDVRDVANAHILAYENSSACG
superfamily: SSF51735	11-255	NAD(P)-binding Rossmann-fold domains	MSEAGKVVCVTGASGYIASWLVKFLLQRGYTVKATVRDPSDPKKTEHLLALDGAKERLHLFKAELLDEGAFDSVVDGCVGVFHTASPFYHNIKDPQAEMIDPAVKGTLNVLRSCAKVPSIKRVVITSSVAAVVYNGRPLGPDVKVDETWFSDPTFCEKSKLWYMLSKTLAEEAAWKYAKDNGIDMVTVNPGLVIGPLLQPTINASVEPILKLINGAETFPNTNYRLIDVRDVANAHILAYENSSA
Gene3D: G3DSA:3.40.50.720 IPR016040	16-231	no description NAD(P)-binding domain	KVVCVTGASGYIASWLVKFLLQRGYTVKATVRDPSDPKKTEHLLALDGAKERLHLFKAELLDEGAFDSVVDGCVGVFHTASPFYHNIKDPQAEMIDPAVKGTLNVLRSCAKVPSIKRVVITSSVAAVVYNGRPLGPDVKVDETWFSDPTFCEKSKLWYMLSKTLAEEAAWKYAKDNGIDMVTVNPGLVIGPLLQPTINASVEPILKLINGAETFPN
HMMPfam: PF01370 IPR001509	18-253	Epimerase NAD-dependent epimerase/dehydratase	VCVTGASGYIASWLVKFLLQRGYTVKATVRDPSDPKKTEHLLALDGAKERLHLFKAELLDEGAFDSVVDGCVGVFHTASPFYHNIKDPQAEMIDPAVKGTLNVLRSCAKVPSIKRVVITSSVAAVVYNGRPLGPDVKVDETWFSDPTFCEKSKLWYMLSKTLAEEAAWKYAKDNGIDMVTVNPGLVIGPLLQPTINASVEPILKLINGAETFPNTNYRLIDVRDVANAHILAYENS

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Analyses

Blast

Blast matches against Reference R-Genes. Show