PRGDB00079617 (Cpp.1837)

Cpp.1837
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	186794470 (EX262875)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Arabidopsis lyrata subsp. lyrata
	Comment?

1443080_5_D14_061 PY06 Carica papaya cDNA, mRNA sequence

DNA Sequence

CGAGCAAGCAGTTAATTCCGATGCCGGGGGATCGGCCATTACGGCCGGGGATGTGATAGACCGGTGATACACCGTGATGTTAAGTCGAGTAATATCTTGTTGGATGAGGAATGGAAGCCTAGAATTGCAGATTTTGGTCTGGCCAAGATTGTGCAGGCAGGTGGGGAAGGGGATTGGACTAATGTCATTGCTGGCACTCATGGTTACATTGCTCCAGAATATGCGTACACGTGCAAAATAACGGAGAAAAGTGATGTATATAGCTTTGGAGTAGTGCTGATGGAGTTGGTGACGGGAAAAAGACCGGTAGAGGCAGAATTCGGAGAGAACAAAGACATAGTGTATTGGGTAAGCAGTAAAATGAAGAGCCAAGAGAGTTTGGTTGAGCTGGTTGACCCGAGCATCTCAGAAGCCATGAAAGATGATGCTGCCAACGTGCTAAGAATTGCACTACTTTGTACTGTGAGAGTCCCAGCTCTAAGGCCTTCCATGAGAATGATAGTTCAAATGCTGGAGCATGCTGAGCCATGTCAACTTACCAACATCATTGTTCATATAGGGCACGAAGAAGGTAGCCCGGACGAGAAATCAAAGACGCTCGGATGATTTGCATTTTTGAATTTGAATCGAGCTTAAACAAGGTCCTGAAATATTTTTTGTTACACCTGTACTTCACTTGATTTTAGCCTAAAAGTTTAAAAATGTATTATTAGATCTATATACTTGGATTAGACACACTCAATTTGCAAGATGCATTATTGAGATTTTAGCTCACaaaaaaaaaaaaaaggccgcctcggccctcgagaagctttctagaccattcgtttggcgcgcgggcccagtagtaagtgaacatggtcatagctgtttcctaggagatcctggtcatgactagtgcttggattctcaccaataaaaaacgcccggcggcaaccgagcgttctgaacaaatccagatggagttctgagtcattactggatctatcacagagtccaagcgagctcgatatcaattacgcccccgccctgccactcatcgcagtactgtgta

Protein sequences

Name	Description	Sequence
Cpp.1837	translated coding region predicted by ESTScan from UniGene Cpp.1837	RASSXFRCRGIGHYGRGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQMLEHAEPCQLTNIIVHIGHEEGSPDEKSKTLG

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-176	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	RASSXFRCRGIGHYGRGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQMLEHAEP
HMMSmart: SM00220 IPR002290	3-171	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	SSXFRCRGIGHYGRGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQML
HMMSmart: SM00219 IPR020635	4-171	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	SXFRCRGIGHYGRGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQML
superfamily: SSF56112 IPR011009	8-171	Protein kinase-like (PK-like) Protein kinase-like domain	CRGIGHYGRGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQML
Gene3D: G3DSA:1.10.510.10	12-174	no description	GHYGRGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQMLEHA
HMMPanther: PTHR24420:SF800	17-176	SUBFAMILY NOT NAMED	GCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQMLEHAEP
HMMPanther: PTHR24420	17-176	FAMILY NOT NAMED,FAMILY NOT NAMED	GCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQMLEHAEP
HMMPfam: PF00069 IPR017442	21-169	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	PVIHRDVKSSNILLDEEWKPRIADFGLAKIVQAGGEGDWTNVIAGTHGYIAPEYAYTCKITEKSDVYSFGVVLMELVTGKRPVEAEFGENKDIVYWVSSKMKSQESLVELVDPSISEAMKDDAANVLRIALLCTVRVPALRPSMRMIVQ
PatternScan: PS00108 IPR008271	22-34	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	VIHRDVKSSNILL

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Analyses

Blast

Blast matches against Reference R-Genes. Show