PRGDB00079619 (Cpp.1886)
| Cpp.1886 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 186801933 (EX275503) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
CCGCTAGTAGGAAAAGAGACCGCAGGCGGGATCGGCCATTACGGCCGGGACCAATATTCCATCGGGTTTCGGTTCGAGTCTCGAGGAACTAGTGTTCATCGAGAATCCAGCTTTGATTGGACCTGTCGATCGTATCATCGGTAATTTCACCAACTTAAGGAGGCTAGTTTTGTCCGGGACCGGGGTTTCTGGAAATATCCCAGAGAGTGTTGGTGATTTGGTTAGTCTCCAAGAGATTTCACTGTCAAGGAACAGGCTTAGTGGTGGGGTTCCCTTGAATTTGACCAAGTTGGAAAAGCTAAGGATTCTCGATTTGAGCTACAACGGACTTGACAGAAATGTCCCTGTATCCATAGGTAATCTCACGGAGCTTCTGAAGCTTGACTTGAGCTTCAATGGATTTTCTGGGGAAATCCCAGATAGCTTGGGGAGATTGCAGAGTTTGGAGTTTCTGGATCTGAGCTTTAATCGCTTCGGGAACTATGGAGTGCCTCTGTTTTTGGCAGATATGCCTAGATTGAGAGACGTGTATTTGAGTGGAAATTCCCTTGGTGGACAAATCCCGAGAATTTGGGAAAACCTTGGGGGCATTTTGGGAATTGGGTTTTCGAACATGGGACTTGTTGGGAGTATTCCGGCATCGATGGGAATGCATTTGAGAAATCTCTGTTACCTGAGACTTGACAACAACAAGCTTGAAGGGCAAGTACCAGAGGAGCTTGGATTGTTGAAAAATGCCAATGAAATCAATTTGGAGAACAACAATCTGAGTGGGAGGATACCGTTTTCAGCACAATTCAGAACTAGAATTGGGGAGAAATTGAAGCTAAGCGGGAATCCAGGCCTGTGTTTTGACGAGAAACAGAACTTTCCCAAAAAGGGTAACAGCAGACTAGAGCAATTCAAACTCTGCAACAACACAGGTACTCTAAATCCTGTGTTATGGGTTTCTAATCTTCTTCTTCTCATCATTCAGGCTTCTATTACCTACTTGTCATGTCATTTTGATTGTTATTGGGATTTTTGCTTGACTATTGACCAGGAATTAAGAGGAT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Cpp.1886 | translated coding region predicted by ESTScan from UniGene Cpp.1886 | XRXXEKRPQAGSAITAGTNIPSGFGSSLEELVFIENPALIGPVDRIIGNFTNLRRLVLSGTGVSGNIPESVGDLVSLQEISLSRNRLSGGVPLNLTKLEKLRILDLSYNGLDRNVPVSIGNLTELLKLDLSFNGFSGEIPDSLGRLQSLEFLDLSFNRFGNYGVPLFLADMPRLRDVYLSGNSLGGQIPRIWENLGGILGIGFSNMGLVGSIPASMGMHLRNLCYLRLDNNKLEGQVPEELGLLKNANEINLENNNLSGRIPFSAQFRTRIGEKLKLSGNPGLCFDEKQNFPKKGNSRLEQFKLCNNTGTLNPVLWVSNLLLLIIQASITYLSCHFDCYWDFCLTIDQELRGX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52058 | 1-292 | L domain-like,LRR | XRXXEKRPQAGSAITAGTNIPSGFGSSLEELVFIENPALIGPVDRIIGNFTNLRRLVLSGTGVSGNIPESVGDLVSLQEISLSRNRLSGGVPLNLTKLEKLRILDLSYNGLDRNVPVSIGNLTELLKLDLSFNGFSGEIPDSLGRLQSLEFLDLSFNRFGNYGVPLFLADMPRLRDVYLSGNSLGGQIPRIWENLGGILGIGFSNMGLVGSIPASMGMHLRNLCYLRLDNNKLEGQVPEELGLLKNANEINLENNNLSGRIPFSAQFRTRIGEKLKLSGNPGLCFDEKQNFP |
| Gene3D: G3DSA:3.80.10.10 | 19-104 | no description | NIPSGFGSSLEELVFIENPALIGPVDRIIGNFTNLRRLVLSGTGVSGNIPESVGDLVSLQEISLSRNRLSGGVPLNLTKLEKLRIL |
| HMMPanther: PTHR24420 | 20-284 | FAMILY NOT NAMED,FAMILY NOT NAMED | IPSGFGSSLEELVFIENPALIGPVDRIIGNFTNLRRLVLSGTGVSGNIPESVGDLVSLQEISLSRNRLSGGVPLNLTKLEKLRILDLSYNGLDRNVPVSIGNLTELLKLDLSFNGFSGEIPDSLGRLQSLEFLDLSFNRFGNYGVPLFLADMPRLRDVYLSGNSLGGQIPRIWENLGGILGIGFSNMGLVGSIPASMGMHLRNLCYLRLDNNKLEGQVPEELGLLKNANEINLENNNLSGRIPFSAQFRTRIGEKLKLSGNPGLC |
| HMMSmart: SM00369 IPR003591
|
98-122 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LEKLRILDLSYNGLDRNVPVSIGNL |
| HMMPfam: PF13855 | 100-159 | LRR_8,Leucine rich repeat | KLRILDLSYNGLDRNVPVSIGNLTELLKLDLSFNGFSGEIPDSLGRLQSLEFLDLSFNRF |
| Gene3D: G3DSA:3.80.10.10 | 105-312 | no description | DLSYNGLDRNVPVSIGNLTELLKLDLSFNGFSGEIPDSLGRLQSLEFLDLSFNRFGNYGVPLFLADMPRLRDVYLSGNSLGGQIPRIWENLGGILGIGFSNMGLVGSIPASMGMHLRNLCYLRLDNNKLEGQVPEELGLLKNANEINLENNNLSGRIPFSAQFRTRIGEKLKLSGNPGLCFDEKQNFPKKGNSRLEQFKLCNNTGTLN |
| HMMSmart: SM00369 IPR003591
|
146-169 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LQSLEFLDLSFNRFGNYGVPLFLA |
| HMMSmart: SM00369 IPR003591
|
171-194 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
MPRLRDVYLSGNSLGGQIPRIWEN |
| HMMSmart: SM00369 IPR003591
|
220-244 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LRNLCYLRLDNNKLEGQVPEELGLL |
| Seg: seg | 243-257 | seg | LLKNANEINLENNNL |
List of Contributions
There has not been any contribution yet.
