PRGDB00079623 (Cpp.2129)
| Cpp.2129 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 186737463 (EX262394) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
CCCCCTTCTGTTATTCGGCTGCGGGAGTCGGCCATTACGGCCGGGGACGCGAAAACAGAATCTGTGCGAGCGAAAAAACGAAAATGAACAGTGGCGAAGGCAAGACCGTCTGCGTCACCGGAGCCTCCGGTTACATAGCTTCATGGATCGTCAACCTCCTCCTCCTCCGTGGCTACACTGTCAAGGCCTCTGTTCGCGACCCAAATGATCCAAGAAAGACTGAGCACTTGCTTGGACTGGAAGGTGCTAGGGAAAGATTGCAACTGTTTAAAGCAAACCTATTAGAAGAAAGCTCTTTTGACTCTGTTATTGATGGATGCGAAGGTGTCTTTCATACAGCATCTCCCTTCTACCATGATGTTAAGGACCCACAGGTTGAGTTACTAGACCCTGCAGTAAAGGGAACCCTTAATGTTCTCAACTCCTGTGCAAAGACCTCTTCTGTCAGACGAGTTGTTTTAACATCTTCTATAGCTGCTGTTGCTTTCAACGGAAAACCTCGAACTCCAGCAACAGTAGTTGATGAAACTTGGTTTTCTGATCCAGACTTTTGCCGATCATCAAAGCTGTGGTACGTGCTTTCAAAAACCTTGGCTGAAGATTCTGCCTGGAAATTTGCAAAAGAGAAGGGTATGGAACTGGTTACCATAAACCCAGCAATGGTGATTGGTCCTCTCTTACAGCCAACTCTTAATACCAGTGCTGCAGCAGTTTTAAGCTTAATTAAAGGAGCACATACCTTCCCGAATGCAACTTTTGGATGGGTCAATGTTAAAGATGTTGCTAATGCACATATTCAAGCATTTGAAATTCCATCAGCCAGTGGAAGATATTGTTTGGTTGAGAGAGTTGCACATTATTCGGAAGTTGTGAAGATTTTACGCCAGTACTACCCTGCTTTCCAACTTCCAGAGAAGTGTGCAGATGACAAGCCATATGTGCCGACATATCAGTGTCGAAAGAAAGAGCAAAGAGCTGGGTATTGAGTTCATTCCATTGAAGTGAGCATCAGAAACAGTTGAGACGTTGAGAAAAGGATTGTGCAGTCTGAGTCTTTTCTTATTATAGTTTGTTTGGAAATAAAATGACGGTGACCTCCTATCAAACCTTTTGTCTTTATGCTGGGTGCT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Cpp.2129 | translated coding region predicted by ESTScan from UniGene Cpp.2129 | XPFCYSAAGVGHYGRGRENRICASEKTKMNSGEGKTVCVTGASGYIASWIVNLLLLRGYTVKASVRDPNDPRKTEHLLGLEGARERLQLFKANLLEESSFDSVIDGCEGVFHTASPFYHDVKDPQVELLDPAVKGTLNVLNSCAKTSSVRRVVLTSSIAAVAFNGKPRTPATVVDETWFSDPDFCRSSKLWYVLSKTLAEDSAWKFAKEKGMELVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAHTFPNATFGWVNVKDVANAHIQAFEIPSASGRYCLVERVAHYSEVVKILRQYYPAFQLPEKCADDKPYVPTYQCRKKEQRAGY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR10366:SF9 | 19-318 | CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE | NRICASEKTKMNSGEGKTVCVTGASGYIASWIVNLLLLRGYTVKASVRDPNDPRKTEHLLGLEGARERLQLFKANLLEESSFDSVIDGCEGVFHTASPFYHDVKDPQVELLDPAVKGTLNVLNSCAKTSSVRRVVLTSSIAAVAFNGKPRTPATVVDETWFSDPDFCRSSKLWYVLSKTLAEDSAWKFAKEKGMELVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAHTFPNATFGWVNVKDVANAHIQAFEIPSASGRYCLVERVAHYSEVVKILRQYYPAFQLPEKCADDKPYVPTYQ |
| HMMPanther: PTHR10366 | 19-318 | FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE | NRICASEKTKMNSGEGKTVCVTGASGYIASWIVNLLLLRGYTVKASVRDPNDPRKTEHLLGLEGARERLQLFKANLLEESSFDSVIDGCEGVFHTASPFYHDVKDPQVELLDPAVKGTLNVLNSCAKTSSVRRVVLTSSIAAVAFNGKPRTPATVVDETWFSDPDFCRSSKLWYVLSKTLAEDSAWKFAKEKGMELVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAHTFPNATFGWVNVKDVANAHIQAFEIPSASGRYCLVERVAHYSEVVKILRQYYPAFQLPEKCADDKPYVPTYQ |
| superfamily: SSF51735 | 29-309 | NAD(P)-binding Rossmann-fold domains | MNSGEGKTVCVTGASGYIASWIVNLLLLRGYTVKASVRDPNDPRKTEHLLGLEGARERLQLFKANLLEESSFDSVIDGCEGVFHTASPFYHDVKDPQVELLDPAVKGTLNVLNSCAKTSSVRRVVLTSSIAAVAFNGKPRTPATVVDETWFSDPDFCRSSKLWYVLSKTLAEDSAWKFAKEKGMELVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAHTFPNATFGWVNVKDVANAHIQAFEIPSASGRYCLVERVAHYSEVVKILRQYYPAFQLPEKCAD |
| Gene3D: G3DSA:3.40.50.720 IPR016040
|
35-261 | no description NAD(P)-binding domain
|
KTVCVTGASGYIASWIVNLLLLRGYTVKASVRDPNDPRKTEHLLGLEGARERLQLFKANLLEESSFDSVIDGCEGVFHTASPFYHDVKDPQVELLDPAVKGTLNVLNSCAKTSSVRRVVLTSSIAAVAFNGKPRTPATVVDETWFSDPDFCRSSKLWYVLSKTLAEDSAWKFAKEKGMELVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAHTFPNATFGWVNVKDV |
| HMMPfam: PF01370 IPR001509
|
37-273 | Epimerase NAD-dependent epimerase/dehydratase
|
VCVTGASGYIASWIVNLLLLRGYTVKASVRDPNDPRKTEHLLGLEGARERLQLFKANLLEESSFDSVIDGCEGVFHTASPFYHDVKDPQVELLDPAVKGTLNVLNSCAKTSSVRRVVLTSSIAAVAFNGKPRTPATVVDETWFSDPDFCRSSKLWYVLSKTLAEDSAWKFAKEKGMELVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAHTFPNATFGWVNVKDVANAHIQAFEIPS |
| Seg: seg | 146-157 | seg | TSSVRRVVLTSS |
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