PRGDB00079628 (Cpp.2355)
| Cpp.2355 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 186808340 (EX302119) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
GCCCGGGCGGGGCGGGGGATCGGCATTACGGCCGGGGAAAGAAGAGGCTCAAATGATGCTAAAAATTTGGTGAAAACCCTAAGTGACAGTAGCTTGAACTTCAAGTACTCTATACTAGAGAAGGCTACAGGATCATTTGCCGAGGCCAACAAGCTTGGACAAGGAGGATTTGGGACAGTCTATAAAGGAATCCTTCCTGATGGAAGAGAGATTGCCGTTAAGAGGCTTTTCTTTAACAACAGACATAGAGCAGCAGATTTCTACAATGAAGTAAACATCATCAGCAGCGTGGAACACAAGAATCTGGTCAGGCTGTTGGGATGCAGTTGTTCAGGACCTGAAAGCCTTCTTGTTTATGAATACCTGCCTAATAAGAGTCTTGATCGTTTCATCTTTGATGCAACCAGAGGTAAAACACTTAACTGGGAGCAGAGATACCAGATTATTATTGGGACTGCAGAAGGTCTAGTTTACCTTCATGAGAACTCCAATGTTAGAATCATTCACAGGGACATAAAGGCCAGTAATATCTTGTTAGACTCAAAACTCCGGGCTAGGATTGCTGATTTTGGGGTTGGCGAGATCTTTCCAGGAGGACAAGAGTCACATCAGCACAGCTATTGCCGGCACCCTAGGGATATATGGCTCCAGAGTACCTAGCCCATGGCCAATTAACGGAAAAGGCAGACGTCTATAGCTTTGGTGTCCTTCTGTTGGAGGATTATCACAGCGAAGCAAACAGCGGTAGCAAAACCTCAGTTATACCGACAACCTTGGTGGCATTAACGTGGCAAGCATTTCAGCAGGCAGAGTTGGAGGACTTCATTGACCCAATCTATGTTATAAACTTTCCACAATGGAACACGTTAAGATGGAGCATTTATAAGCGGTGGCATATCGGACTTCCTGTGGGCTCCAAGAGATTACAATCGATGGCAACTATAATTGGTCAAAGGCCCTGGCGATGGTTACCAGGAGAGGGGTGTAGACTC
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Cpp.2355 | translated coding region predicted by ESTScan from UniGene Cpp.2355 | ARAGRGIGITAGERRGSNDAKNLVKTLSDSSLNFKYSILEKATGSFAEANKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLEDYHSEANSGSKTSVIPTTLVALTWQAFQQAELEDFIDPIYVINFPQWNTLRWSIYKRWHIGLPVGSKRLQSMATIIGQRPWRWLPGEGCRL |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 1-16 | seg | ARAGRGIGITAGERRG |
| superfamily: SSF56112 IPR011009
|
18-240 | Protein kinase-like (PK-like) Protein kinase-like domain
|
NDAKNLVKTLSDSSLNFKYSILEKATGSFAEANKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLE |
| HMMPanther: PTHR24420:SF433 | 28-279 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | SDSSLNFKYSILEKATGSFAEANKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLEDYHSEANSGSKTSVIPTTLVALTWQAFQQAELEDFIDPI |
| HMMPanther: PTHR24420 | 28-279 | FAMILY NOT NAMED,FAMILY NOT NAMED | SDSSLNFKYSILEKATGSFAEANKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLEDYHSEANSGSKTSVIPTTLVALTWQAFQQAELEDFIDPI |
| Gene3D: G3DSA:3.30.200.20 | 30-107 | no description | SSLNFKYSILEKATGSFAEANKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLG |
| ProfileScan: PS50011 IPR000719
|
46-331 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FAEANKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLEDYHSEANSGSKTSVIPTTLVALTWQAFQQAELEDFIDPIYVINFPQWNTLRWSIYKRWHIGLPVGSKRLQSMATIIGQRPWRWLPGEGCRL |
| HMMSmart: SM00220 IPR002290
|
46-293 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FAEANKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLEDYHSEANSGSKTSVIPTTLVALTWQAFQQAELEDFIDPIYVINFPQWNTLRWS |
| HMMSmart: SM00219 IPR020635
|
46-294 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FAEANKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLEDYHSEANSGSKTSVIPTTLVALTWQAFQQAELEDFIDPIYVINFPQWNTLRWSI |
| HMMPfam: PF07714 IPR001245
|
50-244 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
NKLGQGGFGTVYKGILPDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLEDYHS |
| PatternScan: PS00107 IPR017441
|
52-74 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGQGGFGTVYKGILPDGREIAVK |
| Gene3D: G3DSA:1.10.510.10 | 108-240 | no description | CSCSGPESLLVYEYLPNKSLDRFIFDATRGKTLNWEQRYQIIIGTAEGLVYLHENSNVRIIHRDIKASNILLDSKLRARIADFGVGEIFPGGQESHQHSYCRHPXGYMAPEYLAHGQLTEKADVYSFGVLLLE |
| PatternScan: PS00108 IPR008271
|
167-179 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDIKASNILL |
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