PRGDB00080691 (Ptc.463)

From PRG Wiki
Revision as of 19:39, 5 September 2012 by Cepabot (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Ptc.463
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 144603362 (CT869252)
Gene Class RLP
Domain Type Ser-Thr Kinase, LRR
Gene Species Dimocarpus longan

Comment?

CT869252 Phaeodactylum tricornutum silica minus (artificial seawater) Phaeodactylum tricornutum cDNA 5', mRNA sequence

DNA Sequence

GCAGGTGGAAATTTTGGAGCGGTACGCAGTGGTCGTCATGGACTTTGCCCTGCACGACGGCGAGTCACGTGTCGCGAATAATTACGCCTTTATCCCCGCCTGCGATTGGCCTGGAGTGACCTGTATGGACGTGGTGGATTCCAATATTTCGCGCATCACCCAAATCAATTGGGCTCGGATGAACCTCAACGGCGTTCTGCCTACCGAAGTGGCCGTGTTGGAAGATCTCGTCACGCTAGATCTCGCCGAGAACGACATTGAAGGGACGCTCCCCGAAGGACTTTTTACCCTCAAGGATTTGCGGTTCCTTTATTTGCACGATAACGCGTTCACCGGAACACTCTCGGAGAACTTTTCCGAACTGAGCGCCCTGGAATCGCTCTATTTGGGAGACAACGAATTTTCCGGACCCTTTCCCAAGGGACTGGGCTCGCCCAGTTTAGGGGGAGGCGATGCCAACGTGCGGCCTTTGCGTTACTTGAGTTTGTATCGCAACAGCATCACCGGTTCCATTCCGGTCAATATGAACTTGCGGAGGCTCTATCTCTTGGATCTGGGCTACAACGACATGACGGGCACCTTGCCAGCGGACTGGTCAAACGGCGTTAACACCATGAATGCGCTCACATTATTATACCTCAACCACAATTCGTTTCGGGGGACCATTCCAAGTACCTACCCCGAACTTGGGAATGACCGCCTGCAAGTTTACGAACTTAACGACAACCAACTCACAGGTGAAGTACCGGGTGGGTATGTGGTTCGCAATCTTTTACAGTCGGTGGAGATGCAGAACAATAACTTTTCGTCGATCAACAATGACGTTTGCAACTTGATTGTCTTTATTGGTGGCGAATCACTAATTTCAAAGCCGATTGTGAAGTGTGGTCCTGCAATTTCTCTCTGGGCCATGAACGCTGCATTTAAAAATGGATGGAATAAGGCGCCGGGTGAAGGAAAAAGCAAGGGACTATGGAATTGAAAAAGGGCCCCCCCTTCttttgacttttttgtattttgtgattttgGTTGTT


Protein sequences

Name Description Sequence
Ptc.463 translated coding region predicted by ESTScan from UniGene Ptc.463

XQVEILERYAVVVMDFALHDGESRVANNYAFIPACDWPGVTCMDVVDSNISRITQINWARMNLNGVLPTEVAVLEDLVTLDLAENDIEGTLPEGLFTLKDLRFLYLHDNAFTGTLSENFSELSALESLYLGDNEFSGPFPKGLGSPSLGGGDANVRPLRYLSLYRNSITGSIPVNMNLRRLYLLDLGYNDMTGTLPADWSNGVNTMNALTLLYLNHNSFRGTIPSTYPELGNDRLQVYELNDNQLTGEVPGGYVVRNLLQSVEMQNNNFSSINNDVCNLIVFIGGESLISKPIVKCGPAISLWAMNAAFKNGWNKAPGEGKSKGLWN


Domains

Domain Start-End Description Sequence

superfamily: SSF52058
26-274 L domain-like,LRR

ANNYAFIPACDWPGVTCMDVVDSNISRITQINWARMNLNGVLPTEVAVLEDLVTLDLAENDIEGTLPEGLFTLKDLRFLYLHDNAFTGTLSENFSELSALESLYLGDNEFSGPFPKGLGSPSLGGGDANVRPLRYLSLYRNSITGSIPVNMNLRRLYLLDLGYNDMTGTLPADWSNGVNTMNALTLLYLNHNSFRGTIPSTYPELGNDRLQVYELNDNQLTGEVPGGYVVRNLLQSVEMQNNNFSSINN

HMMPanther: PTHR24420
35-270 FAMILY NOT NAMED,FAMILY NOT NAMED

CDWPGVTCMDVVDSNISRITQINWARMNLNGVLPTEVAVLEDLVTLDLAENDIEGTLPEGLFTLKDLRFLYLHDNAFTGTLSENFSELSALESLYLGDNEFSGPFPKGLGSPSLGGGDANVRPLRYLSLYRNSITGSIPVNMNLRRLYLLDLGYNDMTGTLPADWSNGVNTMNALTLLYLNHNSFRGTIPSTYPELGNDRLQVYELNDNQLTGEVPGGYVVRNLLQSVEMQNNNFS

Gene3D: G3DSA:3.80.10.10
47-276 no description

DSNISRITQINWARMNLNGVLPTEVAVLEDLVTLDLAENDIEGTLPEGLFTLKDLRFLYLHDNAFTGTLSENFSELSALESLYLGDNEFSGPFPKGLGSPSLGGGDANVRPLRYLSLYRNSITGSIPVNMNLRRLYLLDLGYNDMTGTLPADWSNGVNTMNALTLLYLNHNSFRGTIPSTYPELGNDRLQVYELNDNQLTGEVPGGYVVRNLLQSVEMQNNNFSSINNDV

Seg: seg
135-151 seg

FSGPFPKGLGSPSLGGG

HMMPfam: PF00560
IPR001611
158-175 LRR_1
Leucine-rich repeat

LRYLSLYRNSITGSIPVN






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox