PRGDB00081102 (Pvr.38927)

Pvr.38927
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	198380002 (GD044683)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Saccharum hybrid cultivar
	Comment?

CCHZ23583.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum cDNA clone CCHZ23583 5', mRNA sequence

DNA Sequence

GAAGAAATAGCTGTGAAGAGGCTTTCGCAGGATTCCTCACAGGGGTTCCAAGAGCTTAAGAACGAGCTCGTGCTGGCTGCCAAGCTCAAGCACAGGAACCTGGTCCAGCTTCTGGGGGTGTCCTTGCAAGAAGAGAAGCTGGTCATCTACGAGTATATGCCCAATAGAAGCCTAGATACCTTCCTTTCCGATCCAATGAGACGGAAGCAGCTGGATTGGAGCAAGAGGTTTTCCATCATCTGTGGTATCGCGCGGGGACTTCTTTACCTCCATGAGGAGTCCCGCTTAAAGGTCATCCACAGAGATCTAAAGCCGAGCAATGTGTTGCTTGATGCGGATATGAACCCCAAAATTTCAGATTTCGGAATTGCCAGGGCTTTCACCGTAGACCAATCTAGAGATATAACAAGAAGACCTGTTGGAACCCTCGGGTACATGTCCCCAGAGTATGCCTACTGGGGTCATGTTTCGACCAAGTCGGACATATTCAGCTTTGGTGTCATAGTCCTAGAGATGGTGACCGGGCGAAGGAACAATAGCGCATACAACAACACTTCTGACTCCATATCTGTTCTGAGCCATGTTTGGGACAAGTGGAGGGCTGGTTCAATGGTGGATGTCGTAGACCCATTGCTAGCTGAGTCTGGGTACCCAGAAAGCGAGGTCCTAAACTGCATAGAGATCGGGCTTCTATGCGTCCAGGAAAACCCGGTGGATCGGCCAGACGCCTCGGCGGTGGTGCTTATGCTCAGCAGTCCGACCACACGTCCGATGACAGACGAGC

Protein sequences

Name	Description	Sequence
Pvr.38927	translated coding region predicted by ESTScan from UniGene Pvr.38927	EEIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMPNRSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAYNNTSDSISVLSHVWDKWRAGSMVDVVDPLLAESGYPESEVLNCIEIGLLCVQENPVDRPDASAVVLMLSSPTTRPMTDEX

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-255	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	EEIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMPNRSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAYNNTSDSISVLSHVWDKWRAGSMVDVVDPLLAESGYPESEVLNCIEIGLLCVQENPVDRPDASAVVLMLSSPTT
superfamily: SSF56112 IPR011009	1-250	Protein kinase-like (PK-like) Protein kinase-like domain	EEIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMPNRSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAYNNTSDSISVLSHVWDKWRAGSMVDVVDPLLAESGYPESEVLNCIEIGLLCVQENPVDRPDASAVVLML
HMMPanther: PTHR24420	1-252	FAMILY NOT NAMED,FAMILY NOT NAMED	EEIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMPNRSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAYNNTSDSISVLSHVWDKWRAGSMVDVVDPLLAESGYPESEVLNCIEIGLLCVQENPVDRPDASAVVLMLSS
HMMPanther: PTHR24420:SF430	1-252	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	EEIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMPNRSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAYNNTSDSISVLSHVWDKWRAGSMVDVVDPLLAESGYPESEVLNCIEIGLLCVQENPVDRPDASAVVLMLSS
HMMSmart: SM00219 IPR020635	1-250	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	EEIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMPNRSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAYNNTSDSISVLSHVWDKWRAGSMVDVVDPLLAESGYPESEVLNCIEIGLLCVQENPVDRPDASAVVLML
HMMSmart: SM00220 IPR002290	1-255	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	EEIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMPNRSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAYNNTSDSISVLSHVWDKWRAGSMVDVVDPLLAESGYPESEVLNCIEIGLLCVQENPVDRPDASAVVLMLSSPTT
HMMPfam: PF00069 IPR017442	2-182	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	EIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMPNRSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAY
Gene3D: G3DSA:3.30.200.20	2-54	no description	EIAVKRLSQDSSQGFQELKNELVLAAKLKHRNLVQLLGVSLQEEKLVIYEYMP
Gene3D: G3DSA:1.10.510.10	56-250	no description	RSLDTFLSDPMRRKQLDWSKRFSIICGIARGLLYLHEESRLKVIHRDLKPSNVLLDADMNPKISDFGIARAFTVDQSRDITRRPVGTLGYMSPEYAYWGHVSTKSDIFSFGVIVLEMVTGRRNNSAYNNTSDSISVLSHVWDKWRAGSMVDVVDPLLAESGYPESEVLNCIEIGLLCVQENPVDRPDASAVVLML
PatternScan: PS00108 IPR008271	98-110	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	VIHRDLKPSNVLL

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Analyses

Blast

Blast matches against Reference R-Genes. Show