PRGDB00150849 (Cucsa.001360.1)
| Cucsa.001360.1 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
| GenBank | |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Pennisetum glaucum |
DNA Sequence
ATGGAGAAGAAGAAAACCCATTTCGTAAACAAGCATTTTCTCATCTTAGCCATCTTCTCAATCTTCCACTCTGTTGAACCCCAAGAACTTAGCCCTGATGCTCCTGCAATGACGGCTCTCAAAAAGAGCCTAAACCCAACTGAATCCCTTGGCTGGTCCGACCCCAACCCTTGCAAATGGAACCACGTCCTCTGTTCTGATGACAATCGTGTCACTCGAATCCAAATCGGCCGCCAAAATCTCCAAGGTATGCTCCCTTTAAATCTCCAAAATCTCACAGCTCTTGAGCGATTAGAGCTTCAATGGAACAAAATCTCTGGCCCTTTGCCGAGTTTGAGTGGATTAACCTCTTTGCAAGTGCTTTTGCTTAGTGGGAATCAGTTCACTTCCATTCCGTCCGATTTCTTCGCCGGAATGACCTCTCTTCAGGCCGTTGAGATCGACGAAAACCCCTTTTCAGCTTGGGAGATTCCGGCCAGTCTACGAAATGCTTCTACGCTACAGAACTTCTCAGCCAACTCTGCAAATGTTACCGGTCGGATTCCGGAGTTTCTCGGCGGCGAGGACATTCCGGGGCTTACTAATTTGCATCTTGCTTTTAATAATCTTGAAGGGGGTCTTCCTTCCAGCTTTTCTGGATCTCAATTGGAGTCTTTGTGGGTTAATGGACAAAACAGCGCTGATAAACTTAGTGGGAGTATTGATGTTTTGCAGAACATGACTTCTTTGATTGAAGTTTGGTTGCATTCGAATTCATTTTCAGGTCCTTTGCCAGATTTTTCGAGGTTAAAGGATTTGCAGGCGTTGAGTTTAAGAGATAACAAGTTTACTGGTCCTGTTCCAAGTTCTTTGGTGAATTCTCCATCGTTGAAAGTGGTGAATTTGACTAATAATCTGCTTCAGGGTCCAATTCCTCTGTTTAAAACAGGGGTTGTTGTGGATATGACTAATGATTCCAACAGTTTTTGTTTGCAAGATCCTGGGGAATGTGATTCACGAGTGAATACATTGCTTTCTATTGTGAAATTTATGGGTTATCCTCAAAGATTTGCGGAGAATTGGAAGGGAAATGATCCGTGTGCTGAGTGGATTGGAATTTCTTGCAGGAATCAAAGCATAACCATCGTAAACTTTCAGAAAATGGGACTTTCTGGTATGATTTCTCCTGAGTTTGCATCTCTTAAAGGGCTGGAAAGATTGGTTCTTGCTGATAATCATCTCACAGGCTCTATTCCTGAGGAGCTTACAACTCTTCCTTTTCTAACTGAGTTGGATGTTTCGAATAATCAGCTTTCTGGGAAGATTCCTAAGTTTAGGAGTAATGTAATGATGACCATCACAGGTAACCCTGATATTGGGAAAGAAAAAACTGATTCTTCTTCTAATGGTGCTTCACCGTCAGCGAGTTCGAATGACACGAAGGAAGCAGGGTCTAATGGTGGTGGAAATTCCGGAGATGGGGAGAAGAAACCTAGTTCCATGGTTGGAGTCATTGTTCTTTCTGTTGTTGGTGGTGTCTTTGTTCTGTTCTTGATTGGATTGGTGGTTTTGTGTGTGTATAAAATGAAGCAGAAACGATTTAGTCAGGTGCAAAGCCCAAACGCTATGGTTATTCATCCACGCCATTCGGGTTCCGATAATGAGAGTGTAAAGATCACAGTTGCCGGATCGAGTGTTAGGGTTGGTGCAATTAGTGAAACACAAAATGGTGCTAGCAGTGAGACTGGTGATATTCAAATGGTTGAAGCTGGGAACATGGTGATTTCAATTCAGGTGTTGAAAAATGTCACCAATAATTTCAGTGAAGAGAACATTTTGGGACAGGGAGGGTTTGGAACCGTTTACAAAGGAGAGTTGCACGACGGGACAAAGATTGCAGTGAAGAGAATGGAATCAGGAGTCATTAAAGGCAAGGGACTAACAGAGTTCAAGTCTGAGATCGCTGTTTTGACAAAAGTTCGGCACCGACATCTCGTCGCTCTTCTCGGATACTGCTTAGATGGGAACGAGAAACTTCTCGTTTACGAGTACATGCCTCAAGGTACTCTTAGCAGACATCTTTTCAACTGGCCAGAAGAAGGATTGAAACCTTTGGAATGGACAAAGAGGCTGACCATTGCATTAGATGTTGCAAGGGGTGTTGAGTATCTTCATGGTTTGGCACATCAAAGCTTTATACATAGGGATTTGAAGCCTTCAAACATTCTTCTTGGAGATGATATGAGAGCTAAGGTTGCAGACTTTGGTCTTGTCCGTCTAGCACCAGAAGGTAAGGGTTCCATTGAGACGAGGATTGCTGGGACCTTTGGATATTTGGCACCAGAGTATGCAGTTACGGGTCGCGTAACGACTAAAGTTGATGTATTCAGCTTCGGTGTGATTCTAATGGAGCTAATCACCGGGAGAAAGGCTCTTGACGAGAGCCAGCCTGAGGAAAGCATGCACCTTGTAACTTGGTTCCGTCGGATGCAAATCAACAAGGACTCCTTTCACAAGGCTATTGATCCAACCATTGATCTTACCGAAGAAACGTTTGCCAGCATCAACACCGTGGCGGAGTTGGCTGGTCATTGTTGTGCTAGGGAGCCATATCAAAGACCAGATATGGGTCATGCAGTAAACGTACTATCATCTCTTGTTGAGTTTTGGAAACCAACTGACCAGAACTCCGAAGATATATATGGCATTGACCTTGAGATGTCATTGCCTCAAGCTCTCAAGAAATGGCAGGCTTATGAAGGTAGAAGTCAAATGGAATCGTCTTCATCGTCCCTCCTTCCAAGCTTCGACAACACTCAGACCAGCATACCAACAAGGCCTTACGGGTTTGCAGAATCTTTCACATCTGCAGATGGGAGATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Cucsa.001360.1 | transmembrane kinase 1 (best arabidopsis hit) | MEKKKTHFVNKHFLILAIFSIFHSVEPQELSPDAPAMTALKKSLNPTESLGWSDPNPCKWNHVLCSDDNRVTRIQIGRQNLQGMLPLNLQNLTALERLELQWNKISGPLPSLSGLTSLQVLLLSGNQFTSIPSDFFAGMTSLQAVEIDENPFSAWEIPASLRNASTLQNFSANSANVTGRIPEFLGGEDIPGLTNLHLAFNNLEGGLPSSFSGSQLESLWVNGQNSADKLSGSIDVLQNMTSLIEVWLHSNSFSGPLPDFSRLKDLQALSLRDNKFTGPVPSSLVNSPSLKVVNLTNNLLQGPIPLFKTGVVVDMTNDSNSFCLQDPGECDSRVNTLLSIVKFMGYPQRFAENWKGNDPCAEWIGISCRNQSITIVNFQKMGLSGMISPEFASLKGLERLVLADNHLTGSIPEELTTLPFLTELDVSNNQLSGKIPKFRSNVMMTITGNPDIGKEKTDSSSNGASPSASSNDTKEAGSNGGGNSGDGEKKPSSMVGVIVLSVVGGVFVLFLIGLVVLCVYKMKQKRFSQVQSPNAMVIHPRHSGSDNESVKITVAGSSVRVGAISETQNGASSETGDIQMVEAGNMVISIQVLKNVTNNFSEENILGQGGFGTVYKGELHDGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVNVLSSLVEFWKPTDQNSEDIYGIDLEMSLPQALKKWQAYEGRSQMESSSSSLLPSFDNTQTSIPTRPYGFAESFTSADGR* |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF467 | 13-940 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | FLILAIFSIFHSVEPQELSPDAPAMTALKKSLNPTESLGWSDPNPCKWNHVLCSDDNRVTRIQIGRQNLQGMLPLNLQNLTALERLELQWNKISGPLPSLSGLTSLQVLLLSGNQFTSIPSDFFAGMTSLQAVEIDENPFSAWEIPASLRNASTLQNFSANSANVTGRIPEFLGGEDIPGLTNLHLAFNNLEGGLPSSFSGSQLESLWVNGQNSADKLSGSIDVLQNMTSLIEVWLHSNSFSGPLPDFSRLKDLQALSLRDNKFTGPVPSSLVNSPSLKVVNLTNNLLQGPIPLFKTGVVVDMTNDSNSFCLQDPGECDSRVNTLLSIVKFMGYPQRFAENWKGNDPCAEWIGISCRNQSITIVNFQKMGLSGMISPEFASLKGLERLVLADNHLTGSIPEELTTLPFLTELDVSNNQLSGKIPKFRSNVMMTITGNPDIGKEKTDSSSNGASPSASSNDTKEAGSNGGGNSGDGEKKPSSMVGVIVLSVVGGVFVLFLIGLVVLCVYKMKQKRFSQVQSPNAMVIHPRHSGSDNESVKITVAGSSVRVGAISETQNGASSETGDIQMVEAGNMVISIQVLKNVTNNFSEENILGQGGFGTVYKGELHDGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVNVLSSLVEFWKPTDQNSEDIYGIDLEMSLPQALKKWQAYEGRSQMESSSSSLLPSFDNTQTSIPTRP |
| HMMPanther: PTHR24420 | 13-940 | FAMILY NOT NAMED,FAMILY NOT NAMED | FLILAIFSIFHSVEPQELSPDAPAMTALKKSLNPTESLGWSDPNPCKWNHVLCSDDNRVTRIQIGRQNLQGMLPLNLQNLTALERLELQWNKISGPLPSLSGLTSLQVLLLSGNQFTSIPSDFFAGMTSLQAVEIDENPFSAWEIPASLRNASTLQNFSANSANVTGRIPEFLGGEDIPGLTNLHLAFNNLEGGLPSSFSGSQLESLWVNGQNSADKLSGSIDVLQNMTSLIEVWLHSNSFSGPLPDFSRLKDLQALSLRDNKFTGPVPSSLVNSPSLKVVNLTNNLLQGPIPLFKTGVVVDMTNDSNSFCLQDPGECDSRVNTLLSIVKFMGYPQRFAENWKGNDPCAEWIGISCRNQSITIVNFQKMGLSGMISPEFASLKGLERLVLADNHLTGSIPEELTTLPFLTELDVSNNQLSGKIPKFRSNVMMTITGNPDIGKEKTDSSSNGASPSASSNDTKEAGSNGGGNSGDGEKKPSSMVGVIVLSVVGGVFVLFLIGLVVLCVYKMKQKRFSQVQSPNAMVIHPRHSGSDNESVKITVAGSSVRVGAISETQNGASSETGDIQMVEAGNMVISIQVLKNVTNNFSEENILGQGGFGTVYKGELHDGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVNVLSSLVEFWKPTDQNSEDIYGIDLEMSLPQALKKWQAYEGRSQMESSSSSLLPSFDNTQTSIPTRP |
| superfamily: SSF52058 | 26-446 | L domain-like,LRR | EPQELSPDAPAMTALKKSLNPTESLGWSDPNPCKWNHVLCSDDNRVTRIQIGRQNLQGMLPLNLQNLTALERLELQWNKISGPLPSLSGLTSLQVLLLSGNQFTSIPSDFFAGMTSLQAVEIDENPFSAWEIPASLRNASTLQNFSANSANVTGRIPEFLGGEDIPGLTNLHLAFNNLEGGLPSSFSGSQLESLWVNGQNSADKLSGSIDVLQNMTSLIEVWLHSNSFSGPLPDFSRLKDLQALSLRDNKFTGPVPSSLVNSPSLKVVNLTNNLLQGPIPLFKTGVVVDMTNDSNSFCLQDPGECDSRVNTLLSIVKFMGYPQRFAENWKGNDPCAEWIGISCRNQSITIVNFQKMGLSGMISPEFASLKGLERLVLADNHLTGSIPEELTTLPFLTELDVSNNQLSGKIPKFRSNVMMTI |
| HMMPfam: PF08263 IPR013210
|
32-66 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
PDAPAMTALKKSLNPTESLGWSDPNPCKWNHVLCS |
| Gene3D: G3DSA:3.80.10.10 | 39-308 | no description | ALKKSLNPTESLGWSDPNPCKWNHVLCSDDNRVTRIQIGRQNLQGMLPLNLQNLTALERLELQWNKISGPLPSLSGLTSLQVLLLSGNQFTSIPSDFFAGMTSLQAVEIDENPFSAWEIPASLRNASTLQNFSANSANVTGRIPEFLGGEDIPGLTNLHLAFNNLEGGLPSSFSGSQLESLWVNGQNSADKLSGSIDVLQNMTSLIEVWLHSNSFSGPLPDFSRLKDLQALSLRDNKFTGPVPSSLVNSPSLKVVNLTNNLLQGPIPLFK |
| HMMSmart: SM00369 IPR003591
|
92-114 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTALERLELQWNKISGPLPSLSG |
| ProfileScan: PS51450 IPR001611
|
94-116 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
ALERLELQWNKISGPLPSLSGLT |
| Seg: seg | 106-124 | seg | SGPLPSLSGLTSLQVLLLS |
| HMMPfam: PF13855 | 111-151 | LRR_8,Leucine rich repeat | SLSGLTSLQVLLLSGNQFTSIPSDFFAGMTSLQAVEIDENP |
| HMMSmart: SM00369 IPR003591
|
115-138 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTSLQVLLLSGNQFTSIPSDFFAG |
| ProfileScan: PS51450 IPR001611
|
117-138 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLQVLLLSGNQFTSIPSDFFAG |
| HMMSmart: SM00369 IPR003591
|
190-213 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
IPGLTNLHLAFNNLEGGLPSSFSG |
| ProfileScan: PS51450 IPR001611
|
192-213 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
GLTNLHLAFNNLEGGLPSSFSG |
| ProfileScan: PS51450 IPR001611
|
242-264 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLIEVWLHSNSFSGPLPDFSRLK |
| ProfileScan: PS51450 IPR001611
|
265-286 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
DLQALSLRDNKFTGPVPSSLVN |
| Seg: seg | 279-295 | seg | PVPSSLVNSPSLKVVNL |
| ProfileScan: PS51450 IPR001611
|
289-310 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLKVVNLTNNLLQGPIPLFKTG |
| HMMPfam: PF08263 IPR013210
|
334-368 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
VNTLLSIVKFMGYPQRFAENWKGNDPCAEWIGISC |
| Gene3D: G3DSA:3.80.10.10 | 345-438 | no description | GYPQRFAENWKGNDPCAEWIGISCRNQSITIVNFQKMGLSGMISPEFASLKGLERLVLADNHLTGSIPEELTTLPFLTELDVSNNQLSGKIPKF |
| HMMSmart: SM00369 IPR003591
|
394-418 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LKGLERLVLADNHLTGSIPEELTTL |
| ProfileScan: PS51450 IPR001611
|
396-419 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
GLERLVLADNHLTGSIPEELTTLP |
| HMMPfam: PF12799 | 396-432 | LRR_4,Leucine Rich repeats (2 copies) | GLERLVLADNHLTGSIPEELTTLPFLTELDVSNNQLS |
| Seg: seg | 412-424 | seg | PEELTTLPFLTEL |
| ProfileScan: PS51450 IPR001611
|
420-442 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
FLTELDVSNNQLSGKIPKFRSNV |
| Seg: seg | 459-471 | seg | SSSNGASPSASSN |
| Seg: seg | 477-487 | seg | GSNGGGNSGDG |
| Seg: seg | 495-517 | seg | VGVIVLSVVGGVFVLFLIGLVVL |
| superfamily: SSF56112 IPR011009
|
572-899 | Protein kinase-like (PK-like) Protein kinase-like domain
|
SSETGDIQMVEAGNMVISIQVLKNVTNNFSEENILGQGGFGTVYKGELHDGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVNVLSSLVEFWKPTDQNSEDIYGIDLE |
| Gene3D: G3DSA:2.60.120.200 IPR013320
|
576-620 | no description Concanavalin A-like lectin/glucanase, subgroup
|
GDIQMVEAGNMVISIQVLKNVTNNFSEENILGQGGFGTVYKGELH |
| HMMSmart: SM00219 IPR020635
|
600-876 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FSEENILGQGGFGTVYKGELHDGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVNVL |
| HMMSmart: SM00220 IPR002290
|
600-880 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FSEENILGQGGFGTVYKGELHDGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVNVLSSLV |
| ProfileScan: PS50011 IPR000719
|
600-880 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSEENILGQGGFGTVYKGELHDGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVNVLSSLV |
| HMMPfam: PF00069 IPR000719
|
602-874 | Pkinase,Ser-thr Protein kinase, catalytic domain
|
EENILGQGGFGTVYKGELHDGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVN |
| PatternScan: PS00107 IPR017441
|
606-628 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGQGGFGTVYKGELHDGTKIAVK |
| Gene3D: G3DSA:3.30.200.20 | 621-670 | no description | DGTKIAVKRMESGVIKGKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNE |
| Gene3D: G3DSA:1.10.510.10 | 671-874 | no description | KLLVYEYMPQGTLSRHLFNWPEEGLKPLEWTKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVN |
| PatternScan: PS00108 IPR008271
|
725-737 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
FIHRDLKPSNILL |
| Seg: seg | 920-928 | seg | SSSSSLLPS |
List of Contributions
There has not been any contribution yet.
