PRGDB00172547 (ppa024298m)
| ppa024298m | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_Pythozome |
| GenBank | |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Prunus persica |
DNA Sequence
ATGAGTTTCACAGGCACCATTCCACCACACTTAGGCAACCTCTCATTCCTTGTTGCACTAAGCTTCAAAAATAACAGCTTCCATGGTAGTTTGCCCCATGAATTGTCTTATTTGCGTCGCCTGAAGTTGATTAGCTTCAGATTCAACAATTTTATGGGATCCATTCCATCGTGGTTTGGGTCCTTCCCCAAACTTCAAAGCTTCGATTTGTATGGCAATCAGTTTTCAGGTACCATACCTTCGACTATCTTCAACTTGTCTACATTGCAAGACATAAATCTAAGCGCTAACAAACTATCAGGTACGTGTGCCAACAAGGTATCTACACTATTGTCATTATGCACTATACCAGACGAGATCGGTGATCTTCCAAATTTAGAGTTTTTGTCATTAGGAGTTAACAATCTCAATGGCCTCATCCCGTCCTCAGTCTTCAATATCTCCACAATGATAAAACTCTCACTTTCTTTTACTCAGCTATCAGGTAGCCTCCCAGCAAACATAGGCCTTGGGCTTCCAAACCTACAAGTCCTTTATATAGGAGCAACTGACCTCAGCGGAGTAATCCCCAACCTCTCCAGTGCTTCTATGCTCACGGCGCTAGACTTGGGCGAAAACTCATTTACAGGGTTTATTCCAACCACGCTATGTGCCTTGACAAACCTTAAGTTACTTAGGTTATCAAAGAATAATTTGGCGATTGATACTTCGACTCCAGAAGCAACCACTCTCTCTTGTTTGGCTAATCTTAGAAGTTTAACAAAACTAAGCTTGGACGCTAATCCGTTAAATGCCACACTTGATGATTTCTTTTCGAATTTCTCTACATCGACGCTTCAACATATTAGTTTAAGAAACTGCAGCATGAGGGGTAACATTCCCATTGGTATTGGCAACTTAAGCAGCTTGATATCCTTAGACCTCGAAAACAATCAATTGAGTGGATCAATTCCAACTTCATTAGGAAGACTTGGAAATCTCCAAGGTATGAACTTGAATTACAACAAATTGCAAGGTTACATCCCATATCAACTTTGTCAACTGTATAACCTCGTTAACTTACAGTTGGCTAGTAATCAGCTCTCTGGTTCTATACCTTCATGCTTGGGTAATCTAGCCGCATCTCTAAGATATCTATCACTAGGGTCCAATTTGTTGAGTTCCACAATACCATCTACTTTTTGGAGACTTGCCTATATCTTACAAGTAAACTTATCATCCAATTCTCTAATTGGACCTCTCTCACAAGATATTGGAAACTTGAAAGTTGTCGTAGAGGTAGATTTATCAAATAACAATTTATCTGGAGAAATTCCAACGGGTGGACCATTCCAAAACTTCTCTGCTCAATCATTTGTCTCAAACAGCGCATTCTGTGGTGCACCCCGATTTCATGTTCCACCATGCAAAAATACTACACTTGAACCAAATTGGAAGAAAGCTAAATATATCATCCCAGGGATCATATCAGTAATTCTACTAGTGGCCTCCATATCTATATTTGTACTACGCAGGAAAAGAAATGTGCAAGTTGCAGGAGAGGCTACCTCCTGTTGCAGTGAACTTGATTTCAAAGCCTTGGTACTGAACTACATGCCTAATGGGAGCCTGGACAAGTGGTTATATTCTCAAAACTATTCTTTGAATATCTTACAGAGGTTGAACATAATGATAGACGTTGCGGTGGCAGTGGAATACCTACACTATGGTTATTCAATACCTATTGTGCACTGTGACATGAAGCCCAGCAATATACTACTAGATGATGATATGGTTGCACACGTTGCTGATTTTGGAATTGCAAAACTCTTGGGTGGAGGAGATTCTATTACCCAAACCATGACTCTAGCCACTGTTGGGTATATGGCTCCAGAGTATGGATTGGAAGGAATGGTTTCAACAAGAGGGGATGTGTACAGTTTCGGAATTGTAGTGATGGAAACATTCACAAGAAGGAAGCCAATAGATGAGATGTTCGATGGGGAAATGAATATAAAGCAATGGATTGCAAACTCACTAGTATTACCAGATGCAAAGATAGATGAAGTTGTGGATGCCAATTTGCTTGGGATTGAGACAGAGCAGGAAGATGATGATCATGTGAGGAAGAGGGATTGCATATCAGCCATTATGAGATTAGCTCTTACTTGCTGTGCAGAATCGGCAGAAGAGAGGATAAGTATGAAAGAAGCTGTAGCCACACTCAACAAAATCAAGACAAAGTTTTTGAAGGACACCACTGCAGGAAGAGGTGTGCTGTTAAACCGTCCTCTTGTTCAGCAACCCTTCAAATAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| ppa024298m | Leucine-rich repeat protein kinase family protein (best arabidopsis hit) | MSFTGTIPPHLGNLSFLVALSFKNNSFHGSLPHELSYLRRLKLISFRFNNFMGSIPSWFGSFPKLQSFDLYGNQFSGTIPSTIFNLSTLQDINLSANKLSGTCANKVSTLLSLCTIPDEIGDLPNLEFLSLGVNNLNGLIPSSVFNISTMIKLSLSFTQLSGSLPANIGLGLPNLQVLYIGATDLSGVIPNLSSASMLTALDLGENSFTGFIPTTLCALTNLKLLRLSKNNLAIDTSTPEATTLSCLANLRSLTKLSLDANPLNATLDDFFSNFSTSTLQHISLRNCSMRGNIPIGIGNLSSLISLDLENNQLSGSIPTSLGRLGNLQGMNLNYNKLQGYIPYQLCQLYNLVNLQLASNQLSGSIPSCLGNLAASLRYLSLGSNLLSSTIPSTFWRLAYILQVNLSSNSLIGPLSQDIGNLKVVVEVDLSNNNLSGEIPTGGPFQNFSAQSFVSNSAFCGAPRFHVPPCKNTTLEPNWKKAKYIIPGIISVILLVASISIFVLRRKRNVQVAGEATSCCSELDFKALVLNYMPNGSLDKWLYSQNYSLNILQRLNIMIDVAVAVEYLHYGYSIPIVHCDMKPSNILLDDDMVAHVADFGIAKLLGGGDSITQTMTLATVGYMAPEYGLEGMVSTRGDVYSFGIVVMETFTRRKPIDEMFDGEMNIKQWIANSLVLPDAKIDEVVDANLLGIETEQEDDDHVRKRDCISAIMRLALTCCAESAEERISMKEAVATLNKIKTKFLKDTTAGRGVLLNRPLVQQPFK* |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 1-738 | FAMILY NOT NAMED,FAMILY NOT NAMED | MSFTGTIPPHLGNLSFLVALSFKNNSFHGSLPHELSYLRRLKLISFRFNNFMGSIPSWFGSFPKLQSFDLYGNQFSGTIPSTIFNLSTLQDINLSANKLSGTCANKVSTLLSLCTIPDEIGDLPNLEFLSLGVNNLNGLIPSSVFNISTMIKLSLSFTQLSGSLPANIGLGLPNLQVLYIGATDLSGVIPNLSSASMLTALDLGENSFTGFIPTTLCALTNLKLLRLSKNNLAIDTSTPEATTLSCLANLRSLTKLSLDANPLNATLDDFFSNFSTSTLQHISLRNCSMRGNIPIGIGNLSSLISLDLENNQLSGSIPTSLGRLGNLQGMNLNYNKLQGYIPYQLCQLYNLVNLQLASNQLSGSIPSCLGNLAASLRYLSLGSNLLSSTIPSTFWRLAYILQVNLSSNSLIGPLSQDIGNLKVVVEVDLSNNNLSGEIPTGGPFQNFSAQSFVSNSAFCGAPRFHVPPCKNTTLEPNWKKAKYIIPGIISVILLVASISIFVLRRKRNVQVAGEATSCCSELDFKALVLNYMPNGSLDKWLYSQNYSLNILQRLNIMIDVAVAVEYLHYGYSIPIVHCDMKPSNILLDDDMVAHVADFGIAKLLGGGDSITQTMTLATVGYMAPEYGLEGMVSTRGDVYSFGIVVMETFTRRKPIDEMFDGEMNIKQWIANSLVLPDAKIDEVVDANLLGIETEQEDDDHVRKRDCISAIMRLALTCCAESAEERISMKEAVATLNKI |
| superfamily: SSF52058 | 1-113 | L domain-like,LRR | MSFTGTIPPHLGNLSFLVALSFKNNSFHGSLPHELSYLRRLKLISFRFNNFMGSIPSWFGSFPKLQSFDLYGNQFSGTIPSTIFNLSTLQDINLSANKLSGTCANKVSTLLSL |
| Gene3D: G3DSA:3.80.10.10 | 3-113 | no description | FTGTIPPHLGNLSFLVALSFKNNSFHGSLPHELSYLRRLKLISFRFNNFMGSIPSWFGSFPKLQSFDLYGNQFSGTIPSTIFNLSTLQDINLSANKLSGTCANKVSTLLSL |
| HMMSmart: SM00369 IPR003591
|
62-86 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
FPKLQSFDLYGNQFSGTIPSTIFNL |
| HMMPfam: PF00560 IPR001611
|
64-84 | LRR_1 Leucine-rich repeat
|
KLQSFDLYGNQFSGTIPSTIF |
| superfamily: SSF52058 | 116-456 | L domain-like,LRR | IPDEIGDLPNLEFLSLGVNNLNGLIPSSVFNISTMIKLSLSFTQLSGSLPANIGLGLPNLQVLYIGATDLSGVIPNLSSASMLTALDLGENSFTGFIPTTLCALTNLKLLRLSKNNLAIDTSTPEATTLSCLANLRSLTKLSLDANPLNATLDDFFSNFSTSTLQHISLRNCSMRGNIPIGIGNLSSLISLDLENNQLSGSIPTSLGRLGNLQGMNLNYNKLQGYIPYQLCQLYNLVNLQLASNQLSGSIPSCLGNLAASLRYLSLGSNLLSSTIPSTFWRLAYILQVNLSSNSLIGPLSQDIGNLKVVVEVDLSNNNLSGEIPTGGPFQNFSAQSFVSNS |
| Gene3D: G3DSA:3.80.10.10 | 116-233 | no description | IPDEIGDLPNLEFLSLGVNNLNGLIPSSVFNISTMIKLSLSFTQLSGSLPANIGLGLPNLQVLYIGATDLSGVIPNLSSASMLTALDLGENSFTGFIPTTLCALTNLKLLRLSKNNLA |
| HMMSmart: SM00369 IPR003591
|
123-147 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LPNLEFLSLGVNNLNGLIPSSVFNI |
| HMMSmart: SM00369 IPR003591
|
172-195 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LPNLQVLYIGATDLSGVIPNLSSA |
| HMMSmart: SM00369 IPR003591
|
219-245 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTNLKLLRLSKNNLAIDTSTPEATTLS |
| Seg: seg | 219-232 | seg | LTNLKLLRLSKNNL |
| Gene3D: G3DSA:3.80.10.10 | 245-441 | no description | SCLANLRSLTKLSLDANPLNATLDDFFSNFSTSTLQHISLRNCSMRGNIPIGIGNLSSLISLDLENNQLSGSIPTSLGRLGNLQGMNLNYNKLQGYIPYQLCQLYNLVNLQLASNQLSGSIPSCLGNLAASLRYLSLGSNLLSSTIPSTFWRLAYILQVNLSSNSLIGPLSQDIGNLKVVVEVDLSNNNLSGEIPTG |
| HMMSmart: SM00369 IPR003591
|
250-273 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LRSLTKLSLDANPLNATLDDFFSN |
| HMMSmart: SM00369 IPR003591
|
300-324 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSSLISLDLENNQLSGSIPTSLGRL |
| HMMPfam: PF13855 | 301-361 | LRR_8,Leucine rich repeat | SSLISLDLENNQLSGSIPTSLGRLGNLQGMNLNYNKLQGYIPYQLCQLYNLVNLQLASNQL |
| HMMSmart: SM00369 IPR003591
|
348-372 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LYNLVNLQLASNQLSGSIPSCLGNL |
| HMMSmart: SM00369 IPR003591
|
374-397 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
ASLRYLSLGSNLLSSTIPSTFWRL |
| HMMPfam: PF00560 IPR001611
|
375-397 | LRR_1 Leucine-rich repeat
|
SLRYLSLGSNLLSSTIPSTFWRL |
| ProfileScan: PS50011 IPR000719
|
447-743 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSAQSFVSNSAFCGAPRFHVPPCKNTTLEPNWKKAKYIIPGIISVILLVASISIFVLRRKRNVQVAGEATSCCSELDFKALVLNYMPNGSLDKWLYSQNYSLNILQRLNIMIDVAVAVEYLHYGYSIPIVHCDMKPSNILLDDDMVAHVADFGIAKLLGGGDSITQTMTLATVGYMAPEYGLEGMVSTRGDVYSFGIVVMETFTRRKPIDEMFDGEMNIKQWIANSLVLPDAKIDEVVDANLLGIETEQEDDDHVRKRDCISAIMRLALTCCAESAEERISMKEAVATLNKIKTKFL |
| HMMSmart: SM00220 IPR002290
|
478-743 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
WKKAKYIIPGIISVILLVASISIFVLRRKRNVQVAGEATSCCSELDFKALVLNYMPNGSLDKWLYSQNYSLNILQRLNIMIDVAVAVEYLHYGYSIPIVHCDMKPSNILLDDDMVAHVADFGIAKLLGGGDSITQTMTLATVGYMAPEYGLEGMVSTRGDVYSFGIVVMETFTRRKPIDEMFDGEMNIKQWIANSLVLPDAKIDEVVDANLLGIETEQEDDDHVRKRDCISAIMRLALTCCAESAEERISMKEAVATLNKIKTKFL |
| Seg: seg | 488-503 | seg | IISVILLVASISIFVL |
| HMMSmart: SM00219 IPR020635
|
494-735 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
LVASISIFVLRRKRNVQVAGEATSCCSELDFKALVLNYMPNGSLDKWLYSQNYSLNILQRLNIMIDVAVAVEYLHYGYSIPIVHCDMKPSNILLDDDMVAHVADFGIAKLLGGGDSITQTMTLATVGYMAPEYGLEGMVSTRGDVYSFGIVVMETFTRRKPIDEMFDGEMNIKQWIANSLVLPDAKIDEVVDANLLGIETEQEDDDHVRKRDCISAIMRLALTCCAESAEERISMKEAVATL |
| superfamily: SSF56112 IPR011009
|
518-735 | Protein kinase-like (PK-like) Protein kinase-like domain
|
CCSELDFKALVLNYMPNGSLDKWLYSQNYSLNILQRLNIMIDVAVAVEYLHYGYSIPIVHCDMKPSNILLDDDMVAHVADFGIAKLLGGGDSITQTMTLATVGYMAPEYGLEGMVSTRGDVYSFGIVVMETFTRRKPIDEMFDGEMNIKQWIANSLVLPDAKIDEVVDANLLGIETEQEDDDHVRKRDCISAIMRLALTCCAESAEERISMKEAVATL |
| Gene3D: G3DSA:1.10.510.10 | 518-733 | no description | CCSELDFKALVLNYMPNGSLDKWLYSQNYSLNILQRLNIMIDVAVAVEYLHYGYSIPIVHCDMKPSNILLDDDMVAHVADFGIAKLLGGGDSITQTMTLATVGYMAPEYGLEGMVSTRGDVYSFGIVVMETFTRRKPIDEMFDGEMNIKQWIANSLVLPDAKIDEVVDANLLGIETEQEDDDHVRKRDCISAIMRLALTCCAESAEERISMKEAVA |
| HMMPfam: PF00069 IPR000719
|
526-733 | Pkinase,Ser-thr Protein kinase, catalytic domain
|
ALVLNYMPNGSLDKWLYSQNYSLNILQRLNIMIDVAVAVEYLHYGYSIPIVHCDMKPSNILLDDDMVAHVADFGIAKLLGGGDSITQTMTLATVGYMAPEYGLEGMVSTRGDVYSFGIVVMETFTRRKPIDEMFDGEMNIKQWIANSLVLPDAKIDEVVDANLLGIETEQEDDDHVRKRDCISAIMRLALTCCAESAEERISMKEAVA |
| PatternScan: PS00108 IPR008271
|
575-587 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IVHCDMKPSNILL |
List of Contributions
There has not been any contribution yet.
