PRGDB00172621 (ppa023271m)

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ppa023271m
Gene Type Putative_R-Genes,_predicted_from_Pythozome
GenBank
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Prunus persica

Comment?

disease resistance protein (TIR-NBS-LRR class), putative (best arabidopsis hit)

DNA Sequence

ATGGCTTCCTCTGCTGCTGCAATCCCTCCTCAGGAAAAGTATGATGTGTTTCTTAGTTTCAGAGGTGAGGACACCCGCTATACTTTTACCAGCCATCTTTATGCTGCTTTATGCTCAAAGAAAATCAAAACCTACATAGACGACATAATTGAGAGAGGAGAGCAAATTGCACCTGCCCTTTTCGAAGCAATTGAGACATCAAAGCTTTCGATGATCATTTTCTCGAAAAACTATGCTTCATCCACATGGTGTTTGGATGAACTATTTGTTCTACCGATTTTTTACTGCATCGACCCATCACATGTTCGAAATCAGCAGGGAAGTTATGCATATGCATTTGCTCAACTTGAAACACGTTTCAAGGACAGCACGGAGGGAGTTATGAAGGTGCGCAAGTGGAGAGATGCTTTGAAGGCCACAGCCAATATGGCTGGGTTTGATAATTCGAACAAAAGGGGGACAGAGGCCAATTTCATTGAGAATATTGTATTTGGGGCATGGGGTGGTATTGGCAAGACCACTCTCGCTGATGCTGTGTATCACCGACTTTCTTCTAAATTTGAAGCTTCTTGTTTTCTTGCAAATGTTAGGGAGGAGTTGGAAAAACATGGACTAAAGCACTTGCAAAATGTCCTTCAAAGGCTCAGCCATACAAAGGTCCTCATTGCTCTAGATGATGTGAATGATTCAAAACAATTAGAACTTCTAGTTGTTGATTATGTCCGGTTTGGCCCTGGAAGTCGAATCATTATAACAACAAGATATAGGCGCCTACTTAAGAAATTGGTTGATGCTGATAAGATTTACGAGGTTGAGGGATTATATTATTTTGAAGCTCTTGAGCTCTTTCATTTGCATGCTTTGAAACATAACTGTACTGAAACATGTTATACAGAGGTTTTCAGAATGGTGGTCGATTATGACGGAGGCATGCCATTAGCTCTTAAGATTTTGAGTTCCATATTCCTTCACTGCGACAACAATGAAGACTGGAAAGATGAGAAGTTGAAAAAATTTCCCAACCAAGATATTGAGAACATGTTGAGACTAACATGTTTCTATAAAGGGATGACAATAGATTTTGCAAAGGAAATGATAGATATAAGTGGATTATTTGCTGGTGGAATTAAAGTTCTCATTGATAAGTCTCTCGTATCAATTTCAAGATGGAACAACCTAGAGATGCATGATTTGGTTCAGGAAATGGGTAGGGCAATAGGAACTGAAACCGTTCGAGCCATATTCTTTAACAGATCTAAGATTGGAGAACCACACTTGGATTGTGCAGACTTCAAAAAGATGTCTAATCTATGTTTACTCAATCTCGGCGATTCTAGCTTTGGCAACTATTGCCAATTAAAAGTTTCTCTTCCCAATTATCTTTGTTATCTTTCCTGGCAAGAATATCCTTTGAAATCTATGCCATCAATTTTTTTTCCAGAAAATCTTGTTGAGCTTCGAATGCACAGCAGCAAAGTTGAGCAACTTTGGAATAAGGACCAGAATCTTGAGAACTTAAAAGTGATGGATCTTAGTTTCTCTACTCATCTTATTAAAGTCCCAGATCTCTCTCAAAGTCGAAAATTGGTGCGTATAAATCTTTTTGGCTGTATATCTTCGTATTTTCAGTGTCTTGACAAGCTTACTCATCTTGACCTGGGAGAATGCTCGAATCTCAAATATCTTCCGCAGATGACAAGCAACAGTGAATTCTTAAATTTGCCTAAAACTGCAATAAAGGAATTGCCTTCATCAGTTTGGTCTCACGACAAGATTTCTTACTTGGATATTCGATTTTGTAACGACCTTAGGAATCTCCCAAGCAGCAGCTTCTTTACGGCTGCTCATGTCTTGGCAAGTTATCTAACAGTGTTAGAAATGATAAGGGCAAAAATAGAAGTATTGCCCTCATCAATCGAGTATCTCTTTGGTCTCAATACAATTGGACTACTTGATTGCAGAAGATTTTACTTTCCAGAAATATTGGAGCCTATGGGAGTGCCGGATATTCTATCCTTGATAGGAACAAATGTTAAAGAGCTACCCTCATCAATCGAATTTCTTTTTAATCTCTTCATACTTCATTTGATCAATTGCAAATGGTTTGTGTGTCCCCCAATGAGCATTTGTAAGTTGAAATCTCTTTACGACCTTGATATCTCGGACTTCCCAGAAATATTGGAGCCTATGGGACATCTAAACATCCTGTCGTTGAAAGGAACAGCTGTTAAAGAGCTACCTTCATCAATTAAATGCCTTTTTGGTCTCATGACAATTGAACTGACAAATTGCAAAAGGTTAGCGCATCTCCCTCCCACCATTTGTAAATTGAAATCTCTTCCCGAACTTGATCTCACTGGTTGCTCTGAATTTCAAGACTTCCCAGAAATTTTGGAGCCTATGAAAGACATGAAGTTTCTTTCATTAAAAGGAACAGCGGTTAAAGAGCTACCCTCATCAATTGAATGTCTCTTTGGTCTCATTAAAATTGAACTGAAAAATTGCAAAAGGTTTGCGAGTCTCCCAACAAGCATTTGTAAGTTGAAATCTCTTACACTAAATCTCAGTGGGTGTTATGAATTTGAAGACTTCCCAGAAATCTTGGAGCCTATGAAAGATATGAAGATTTTTTCATTAAGGGGAACACCTGTTAAAGAGCTACCCTCATCAATTGAATGTCTCTTCGGTCGCATTAGAATTGAACTGAAAAATTGGAAAAGGCTTGCGAGTCTCCCAACGAGCATTTGTAAGTTGAAATCTCTTCAAGAACTTGATCTTACTGGTTGCTCTGAATTTGAAGACTTATCAGAAATTTTGGAGCCTATGAAAGATATGAATTTTCTTTCATTAAAAGGAACAGCTGTTAAAGAGCTACCCTCAGTCATTGCAAGAACCTTGAGTCGATCCCTCCTTTGCTTAACCTCATTGCGAGATTTAAAGCTAAGTGGAACCATGCATGATTGTGAGCATACCTGCAAACATCAAACAAGCTTCTTGGCTATTTTGCCTGTCCCTGATCAATTGCAAGAGCCTTCAATCTTTACCAGAGCTCCCATTAAATCTCTTAAAGCACATGGCTGCACATCGCTTAACACAGTGTCAAGCCCAAGCACTGCACTCACACATGGGTTGGATGGATATAATTTGTTTCCAGGGTTTAACCAGGAACTTATTTTCTCTAATTGCCTAAAATTGGATCAGAATACATGGAACCACATAATGGCGGATGCACAACTTAGAATTATGCATTTGGCATTTGCCTCATCAAAGTTTGACAAATTTGAAGTAGCTTCATATGCAGAACTTTCCAAAGAAATTGAAGTAGCCGCAGATGTAGAACTTGAAGCAGAATTTGAAGACGCATCAGATGTAGAATTTTCCGAAGAAATTGAAGTAGCATCAGATGGAGAACTTGAAGACGCATCAGATGTAGAACTTGAAAAAGAAATTGAAGTAGCATCAGATGTAGGAGAAATTGAAGTCGCATCAAATATACGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCAGTTCTGTTATTCAATTGATAACTAG


Protein sequences

Name Description Sequence
ppa023271m disease resistance protein (TIR-NBS-LRR class), putative (best arabidopsis hit)

MASSAAAIPPQEKYDVFLSFRGEDTRYTFTSHLYAALCSKKIKTYIDDIIERGEQIAPALFEAIETSKLSMIIFSKNYASSTWCLDELFVLPIFYCIDPSHVRNQQGSYAYAFAQLETRFKDSTEGVMKVRKWRDALKATANMAGFDNSNKRGTEANFIENIVFGAWGGIGKTTLADAVYHRLSSKFEASCFLANVREELEKHGLKHLQNVLQRLSHTKVLIALDDVNDSKQLELLVVDYVRFGPGSRIIITTRYRRLLKKLVDADKIYEVEGLYYFEALELFHLHALKHNCTETCYTEVFRMVVDYDGGMPLALKILSSIFLHCDNNEDWKDEKLKKFPNQDIENMLRLTCFYKGMTIDFAKEMIDISGLFAGGIKVLIDKSLVSISRWNNLEMHDLVQEMGRAIGTETVRAIFFNRSKIGEPHLDCADFKKMSNLCLLNLGDSSFGNYCQLKVSLPNYLCYLSWQEYPLKSMPSIFFPENLVELRMHSSKVEQLWNKDQNLENLKVMDLSFSTHLIKVPDLSQSRKLVRINLFGCISSYFQCLDKLTHLDLGECSNLKYLPQMTSNSEFLNLPKTAIKELPSSVWSHDKISYLDIRFCNDLRNLPSSSFFTAAHVLASYLTVLEMIRAKIEVLPSSIEYLFGLNTIGLLDCRRFYFPEILEPMGVPDILSLIGTNVKELPSSIEFLFNLFILHLINCKWFVCPPMSICKLKSLYDLDISDFPEILEPMGHLNILSLKGTAVKELPSSIKCLFGLMTIELTNCKRLAHLPPTICKLKSLPELDLTGCSEFQDFPEILEPMKDMKFLSLKGTAVKELPSSIECLFGLIKIELKNCKRFASLPTSICKLKSLTLNLSGCYEFEDFPEILEPMKDMKIFSLRGTPVKELPSSIECLFGRIRIELKNWKRLASLPTSICKLKSLQELDLTGCSEFEDLSEILEPMKDMNFLSLKGTAVKELPSVIARTLSRSLLCLTSLRDLKLSGTMHDCEHTCKHQTSFLAILPVPDQLQEPSIFTRAPIKSLKAHGCTSLNTVSSPSTALTHGLDGYNLFPGFNQELIFSNCLKLDQNTWNHIMADAQLRIMHLAFASSKFDKFEVASYAELSKEIEVAADVELEAEFEDASDVEFSEEIEVASDGELEDASDVELEKEIEVASDVGEIEVASNIRLSLSLSLSLSLSPSQFCYSIDN*

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
2-146 Toll/Interleukin receptor TIR domain
Toll/interleukin-1 receptor homology (TIR) domain

ASSAAAIPPQEKYDVFLSFRGEDTRYTFTSHLYAALCSKKIKTYIDDIIERGEQIAPALFEAIETSKLSMIIFSKNYASSTWCLDELFVLPIFYCIDPSHVRNQQGSYAYAFAQLETRFKDSTEGVMKVRKWRDALKATANMAGF

Gene3D: G3DSA:3.40.50.10140
11-121 no description

QEKYDVFLSFRGEDTRYTFTSHLYAALCSKKIKTYIDDIIERGEQIAPALFEAIETSKLSMIIFSKNYASSTWCLDELFVLPIFYCIDPSHVRNQQGSYAYAFAQLETRFK

ProfileScan: PS50104
IPR000157
12-143 TIR
Toll/interleukin-1 receptor homology (TIR) domain

EKYDVFLSFRGEDTRYTFTSHLYAALCSKKIKTYIDDIIERGEQIAPALFEAIETSKLSMIIFSKNYASSTWCLDELFVLPIFYCIDPSHVRNQQGSYAYAFAQLETRFKDSTEGVMKVRKWRDALKATANM

HMMSmart: SM00255
IPR000157
13-143 Toll
Toll/interleukin-1 receptor homology (TIR) domain

KYDVFLSFRGEDTRYTFTSHLYAALCSKKIKTYIDDIIERGEQIAPALFEAIETSKLSMIIFSKNYASSTWCLDELFVLPIFYCIDPSHVRNQQGSYAYAFAQLETRFKDSTEGVMKVRKWRDALKATANM

HMMPfam: PF01582
IPR000157
16-139 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGEDTRYTFTSHLYAALCSKKIKTYIDDIIERGEQIAPALFEAIETSKLSMIIFSKNYASSTWCLDELFVLPIFYCIDPSHVRNQQGSYAYAFAQLETRFKDSTEGVMKVRKWRDALKA

HMMPanther: PTHR11017:SF20
42-947 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

IKTYIDDIIERGEQIAPALFEAIETSKLSMIIFSKNYASSTWCLDELFVLPIFYCIDPSHVRNQQGSYAYAFAQLETRFKDSTEGVMKVRKWRDALKATANMAGFDNSNKRGTEANFIENIVFGAWGGIGKTTLADAVYHRLSSKFEASCFLANVREELEKHGLKHLQNVLQRLSHTKVLIALDDVNDSKQLELLVVDYVRFGPGSRIIITTRYRRLLKKLVDADKIYEVEGLYYFEALELFHLHALKHNCTETCYTEVFRMVVDYDGGMPLALKILSSIFLHCDNNEDWKDEKLKKFPNQDIENMLRLTCFYKGMTIDFAKEMIDISGLFAGGIKVLIDKSLVSISRWNNLEMHDLVQEMGRAIGTETVRAIFFNRSKIGEPHLDCADFKKMSNLCLLNLGDSSFGNYCQLKVSLPNYLCYLSWQEYPLKSMPSIFFPENLVELRMHSSKVEQLWNKDQNLENLKVMDLSFSTHLIKVPDLSQSRKLVRINLFGCISSYFQCLDKLTHLDLGECSNLKYLPQMTSNSEFLNLPKTAIKELPSSVWSHDKISYLDIRFCNDLRNLPSSSFFTAAHVLASYLTVLEMIRAKIEVLPSSIEYLFGLNTIGLLDCRRFYFPEILEPMGVPDILSLIGTNVKELPSSIEFLFNLFILHLINCKWFVCPPMSICKLKSLYDLDISDFPEILEPMGHLNILSLKGTAVKELPSSIKCLFGLMTIELTNCKRLAHLPPTICKLKSLPELDLTGCSEFQDFPEILEPMKDMKFLSLKGTAVKELPSSIECLFGLIKIELKNCKRFASLPTSICKLKSLTLNLSGCYEFEDFPEILEPMKDMKIFSLRGTPVKELPSSIECLFGRIRIELKNWKRLASLPTSICKLKSLQELDLTGCSEFEDLSEILEPMKDMNF

HMMPanther: PTHR11017
42-947 FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

IKTYIDDIIERGEQIAPALFEAIETSKLSMIIFSKNYASSTWCLDELFVLPIFYCIDPSHVRNQQGSYAYAFAQLETRFKDSTEGVMKVRKWRDALKATANMAGFDNSNKRGTEANFIENIVFGAWGGIGKTTLADAVYHRLSSKFEASCFLANVREELEKHGLKHLQNVLQRLSHTKVLIALDDVNDSKQLELLVVDYVRFGPGSRIIITTRYRRLLKKLVDADKIYEVEGLYYFEALELFHLHALKHNCTETCYTEVFRMVVDYDGGMPLALKILSSIFLHCDNNEDWKDEKLKKFPNQDIENMLRLTCFYKGMTIDFAKEMIDISGLFAGGIKVLIDKSLVSISRWNNLEMHDLVQEMGRAIGTETVRAIFFNRSKIGEPHLDCADFKKMSNLCLLNLGDSSFGNYCQLKVSLPNYLCYLSWQEYPLKSMPSIFFPENLVELRMHSSKVEQLWNKDQNLENLKVMDLSFSTHLIKVPDLSQSRKLVRINLFGCISSYFQCLDKLTHLDLGECSNLKYLPQMTSNSEFLNLPKTAIKELPSSVWSHDKISYLDIRFCNDLRNLPSSSFFTAAHVLASYLTVLEMIRAKIEVLPSSIEYLFGLNTIGLLDCRRFYFPEILEPMGVPDILSLIGTNVKELPSSIEFLFNLFILHLINCKWFVCPPMSICKLKSLYDLDISDFPEILEPMGHLNILSLKGTAVKELPSSIKCLFGLMTIELTNCKRLAHLPPTICKLKSLPELDLTGCSEFQDFPEILEPMKDMKFLSLKGTAVKELPSSIECLFGLIKIELKNCKRFASLPTSICKLKSLTLNLSGCYEFEDFPEILEPMKDMKIFSLRGTPVKELPSSIECLFGRIRIELKNWKRLASLPTSICKLKSLQELDLTGCSEFEDLSEILEPMKDMNF

superfamily: SSF52540
157-347 P-loop containing nucleoside triphosphate hydrolases

NFIENIVFGAWGGIGKTTLADAVYHRLSSKFEASCFLANVREELEKHGLKHLQNVLQRLSHTKVLIALDDVNDSKQLELLVVDYVRFGPGSRIIITTRYRRLLKKLVDADKIYEVEGLYYFEALELFHLHALKHNCTETCYTEVFRMVVDYDGGMPLALKILSSIFLHCDNNEDWKDEKLKKFPNQDIENM

FPrintScan: PR00364
IPR000767
161-176 DISEASERSIST
Disease resistance protein

NIVFGAWGGIGKTTLA

HMMPfam: PF00931
IPR002182
206-345 NB-ARC,NBS
NB-ARC

KHLQNVLQRLSHTKVLIALDDVNDSKQLELLVVDYVRFGPGSRIIITTRYRRLLKKLVDADKIYEVEGLYYFEALELFHLHALKHNCTETCYTEVFRMVVDYDGGMPLALKILSSIFLHCDNNEDWKDEKLKKFPNQDIE

Seg: seg
248-257 seg

RIIITTRYRR

FPrintScan: PR00364
IPR000767
308-322 DISEASERSIST
Disease resistance protein

DGGMPLALKILSSIF

superfamily: SSF52058
378-722 L domain-like,LRR

VLIDKSLVSISRWNNLEMHDLVQEMGRAIGTETVRAIFFNRSKIGEPHLDCADFKKMSNLCLLNLGDSSFGNYCQLKVSLPNYLCYLSWQEYPLKSMPSIFFPENLVELRMHSSKVEQLWNKDQNLENLKVMDLSFSTHLIKVPDLSQSRKLVRINLFGCISSYFQCLDKLTHLDLGECSNLKYLPQMTSNSEFLNLPKTAIKELPSSVWSHDKISYLDIRFCNDLRNLPSSSFFTAAHVLASYLTVLEMIRAKIEVLPSSIEYLFGLNTIGLLDCRRFYFPEILEPMGVPDILSLIGTNVKELPSSIEFLFNLFILHLINCKWFVCPPMSICKLKSLYDLDISD

Gene3D: G3DSA:3.80.10.10
461-721 no description

LCYLSWQEYPLKSMPSIFFPENLVELRMHSSKVEQLWNKDQNLENLKVMDLSFSTHLIKVPDLSQSRKLVRINLFGCISSYFQCLDKLTHLDLGECSNLKYLPQMTSNSEFLNLPKTAIKELPSSVWSHDKISYLDIRFCNDLRNLPSSSFFTAAHVLASYLTVLEMIRAKIEVLPSSIEYLFGLNTIGLLDCRRFYFPEILEPMGVPDILSLIGTNVKELPSSIEFLFNLFILHLINCKWFVCPPMSICKLKSLYDLDIS

FPrintScan: PR00364
IPR000767
501-517 DISEASERSIST
Disease resistance protein

QNLENLKVMDLSFSTHL

superfamily: SSF52047
680-989 RNI-like,LRR

ELPSSIEFLFNLFILHLINCKWFVCPPMSICKLKSLYDLDISDFPEILEPMGHLNILSLKGTAVKELPSSIKCLFGLMTIELTNCKRLAHLPPTICKLKSLPELDLTGCSEFQDFPEILEPMKDMKFLSLKGTAVKELPSSIECLFGLIKIELKNCKRFASLPTSICKLKSLTLNLSGCYEFEDFPEILEPMKDMKIFSLRGTPVKELPSSIECLFGRIRIELKNWKRLASLPTSICKLKSLQELDLTGCSEFEDLSEILEPMKDMNFLSLKGTAVKELPSVIARTLSRSLLCLTSLRDLKLSGTMHDCE

Seg: seg
687-698 seg

FLFNLFILHLIN

Gene3D: G3DSA:3.80.10.10
728-988 no description

EPMGHLNILSLKGTAVKELPSSIKCLFGLMTIELTNCKRLAHLPPTICKLKSLPELDLTGCSEFQDFPEILEPMKDMKFLSLKGTAVKELPSSIECLFGLIKIELKNCKRFASLPTSICKLKSLTLNLSGCYEFEDFPEILEPMKDMKIFSLRGTPVKELPSSIECLFGRIRIELKNWKRLASLPTSICKLKSLQELDLTGCSEFEDLSEILEPMKDMNFLSLKGTAVKELPSVIARTLSRSLLCLTSLRDLKLSGTMHDC

Seg: seg
964-982 seg

RTLSRSLLCLTSLRDLKLS

Seg: seg
1167-1178 seg

LSLSLSLSLSLS






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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