PRGDB00186622 ()

From PRG Wiki
Revision as of 09:10, 7 September 2012 by Cepabot (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 335355790 (HM446520)
Gene Class NL
Domain Type NBS, LRR
Gene Species Mangifera indica

Comment?

Mangifera indica NBS-LRR disease resistance protein (MRNBS14) gene, exon and partial cds.

DNA Sequence

GGTATGGGAGGCATAGGTAAAACAACCATTGCGGGAGCTGTTTTCAACCAAATTTCAAGCCAATTTGAAGGTTACTGCTTCAGTATTAATGTTAGAGAAGAATCGGAAAAATATGGACTAGTTCACATAAGAGACCAAGTTCTTTCACAGTTATTAGAAGAAAATCTCAAAATAGGCACTCCTGTTATACCACAATATATCCAGAGGCGACTTCAACGCAAAAAGGTATTCATTGTCCTTGATGATGTTTGG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein, partial [Mangifera indica].

GMGGIGKTTIAGAVFNQISSQFEGYCFSINVREESEKYGLVHIRDQVLSQLLEENLKIGTPVIPQYIQRRLQRKKVFIVLDDVW


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-84 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGIGKTTIAGAVFNQISSQFEGYCFSINVREESEKYGLVHIRDQVLSQLLEENLKIGTPVIPQYIQRRLQRKKVFIVLDDVW

HMMPfam: PF00931
IPR002182
1-84 NB-ARC,NBS
NB-ARC

GMGGIGKTTIAGAVFNQISSQFEGYCFSINVREESEKYGLVHIRDQVLSQLLEENLKIGTPVIPQYIQRRLQRKKVFIVLDDVW

superfamily: SSF52540
1-84 SSF52540

GMGGIGKTTIAGAVFNQISSQFEGYCFSINVREESEKYGLVHIRDQVLSQLLEENLKIGTPVIPQYIQRRLQRKKVFIVLDDVW

HMMPanther: PTHR11017:SF20
1-84 PTHR11017:SF20,SUBFAMILY NOT NAMED

GMGGIGKTTIAGAVFNQISSQFEGYCFSINVREESEKYGLVHIRDQVLSQLLEENLKIGTPVIPQYIQRRLQRKKVFIVLDDVW

Gene3D: G3DSA:3.40.50.300
2-83 G3DSA:3.40.50.300

MGGIGKTTIAGAVFNQISSQFEGYCFSINVREESEKYGLVHIRDQVLSQLLEENLKIGTPVIPQYIQRRLQRKKVFIVLDDV






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox