PRGDB00194274 (Pgl.527)

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Pgl.527
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 270138733 (BT105685)
Gene Class Unknown
Domain Type
Gene Species Picea glauca

Comment?

Picea glauca clone GQ02826_B20 mRNA sequence

DNA Sequence

ATAGTGATTTCCTATTTGTTTGCTTGAGTTTGTCCAGTCCGCCCGCATTATACGTTGTTAGCCCTTCAGGAGTCACCGTGAATCCTAAAAATGACCTCTGCAACTTTCACAGGTAGAACCATTCTTTGTGTGACAGGAGCAACAGGTTTCGTGGCCTCCTCGCTGGTCAAGCACCTACTCCACCAGGGTTACACTGTTCACGCCACTGTGCGCGATCCAGAGAACGAGGGGAAGGTGCGGCATCTGCTCGACATTCCAGGCGCTGGAGAGAGGCTCAAAGTCTTCAGAGCGGATCTACTGGAAGAAGGAAGCTTCGATGCTGCCATCGACCGTTGTGATGGCGTTTTCCATGTGGCCAGTCCCGTCAACTTCACCCCCAAAAATCCCGAGAGCGATGTCTTGAACCCGGCAGTCGACGGGACGCTGAATGTTCTGAGGGCCTGCACGAAGGCTAAAACCGTAAAGCGCGTTGTGGTCACATCGTCTGCGTCCACGGCTTCGATAAACGAGTCAGAGGAGCAGAGTCAATGTATCGACGAAACCTGCTGGACAGACGTGGATTTCCTCCAGACTAACAAGCCGCCTGCCTGGGCATATCCAGTTTCGAAGACGCTCGCGGAGCAAGCAGCACTGCAGTACGGGGATGAGCAGGGGTTGGATGTGGTCACGATCAACCCTGTCCTGGTGGCCGGGTGTTCCATTAACCCGAACGTCCCACAGACCATCGAGGTTGTCCTTTCCCTCCTCACTGGCATTTCCAAAGACCTAGAAGCTTTTAATATTATTCAGATGGTGTACGGATTCGCTTCGTTGGTTCACGTGGACGACGTCTGCAGCGCCCAGATTTTCTTGATGGACAAACCCTCTGCAGTGGGCCGTTACATCCTGCTGTTCCGTTAACAGCTCTATTCCACAGCTCGCACAATACTTATGCAAACGCTATCCGCAGTATAATGTCCCAACGCAGTTTGAGGATGTGCCACTGATCCAAAAAGTAAACCTTTCGTCGAAGAAATTGGTGGACAGCGGTTTCTCCTTTAAATTTGGAATCAATGAAATCTTCGATGATGCTGTGGACTGCTTGAAGACGAAGGGAGTGCTCAATTAATTAACATCAAGGACAAGGGTGTTTCATTAGGGATAGGAATAATATGGCTGTGTTTGTTTGCATAGAGGAAGCTTGTTAATATATATTGTAAAGTCTTTGATTGTTGGTTGGTTTAGTAGTTGAAATAACTCATTTCAAGCTTTTcaaaaagcaaaaaacaaaGATTGCTTTAGAATTTAATATTATTGAATGAAATGGGATGTTTGGTTAAAAAA


Protein sequences

Name Description Sequence
Pgl.527 translated coding region predicted by ESTScan from UniGene Pgl.527

MTSATFTGRTILCVTGATGFVASSLVKHLLHQGYTVHATVRDPENEGKVRHLLDIPGAGERLKVFRADLLEEGSFDAAIDRCDGVFHVASPVNFTPKNPESDVLNPAVDGTLNVLRACTKAKTVKRVVVTSSASTASINESEEQSQCIDETCWTDVDFLQTNKPPAWAYPVSKTLAEQAALQYGDEQGLDVVTINPVLVAGCSINPNVPQTIEVVLSLLTGISKDLEAFNIIQMVYGFASLVHVDDVCSAQIFLMDKPSAVGRYILCSVNSSIPQLAQYLCKRYPQYNVPTQFEDVPLIQKVNLSSKKLVDSGFSFKFGINEIFDDAVDCLKTKGVLN

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR10366:SF9
1-337 CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE

MTSATFTGRTILCVTGATGFVASSLVKHLLHQGYTVHATVRDPENEGKVRHLLDIPGAGERLKVFRADLLEEGSFDAAIDRCDGVFHVASPVNFTPKNPESDVLNPAVDGTLNVLRACTKAKTVKRVVVTSSASTASINESEEQSQCIDETCWTDVDFLQTNKPPAWAYPVSKTLAEQAALQYGDEQGLDVVTINPVLVAGCSINPNVPQTIEVVLSLLTGISKDLEAFNIIQMVYGFASLVHVDDVCSAQIFLMDKPSAVGRYILCSVNSSIPQLAQYLCKRYPQYNVPTQFEDVPLIQKVNLSSKKLVDSGFSFKFGINEIFDDAVDCLKTKGVL

HMMPanther: PTHR10366
1-337 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

MTSATFTGRTILCVTGATGFVASSLVKHLLHQGYTVHATVRDPENEGKVRHLLDIPGAGERLKVFRADLLEEGSFDAAIDRCDGVFHVASPVNFTPKNPESDVLNPAVDGTLNVLRACTKAKTVKRVVVTSSASTASINESEEQSQCIDETCWTDVDFLQTNKPPAWAYPVSKTLAEQAALQYGDEQGLDVVTINPVLVAGCSINPNVPQTIEVVLSLLTGISKDLEAFNIIQMVYGFASLVHVDDVCSAQIFLMDKPSAVGRYILCSVNSSIPQLAQYLCKRYPQYNVPTQFEDVPLIQKVNLSSKKLVDSGFSFKFGINEIFDDAVDCLKTKGVL

superfamily: SSF51735
10-333 NAD(P)-binding Rossmann-fold domains

TILCVTGATGFVASSLVKHLLHQGYTVHATVRDPENEGKVRHLLDIPGAGERLKVFRADLLEEGSFDAAIDRCDGVFHVASPVNFTPKNPESDVLNPAVDGTLNVLRACTKAKTVKRVVVTSSASTASINESEEQSQCIDETCWTDVDFLQTNKPPAWAYPVSKTLAEQAALQYGDEQGLDVVTINPVLVAGCSINPNVPQTIEVVLSLLTGISKDLEAFNIIQMVYGFASLVHVDDVCSAQIFLMDKPSAVGRYILCSVNSSIPQLAQYLCKRYPQYNVPTQFEDVPLIQKVNLSSKKLVDSGFSFKFGINEIFDDAVDCLKT

Gene3D: G3DSA:3.40.50.720
IPR016040
12-246 no description
NAD(P)-binding domain

LCVTGATGFVASSLVKHLLHQGYTVHATVRDPENEGKVRHLLDIPGAGERLKVFRADLLEEGSFDAAIDRCDGVFHVASPVNFTPKNPESDVLNPAVDGTLNVLRACTKAKTVKRVVVTSSASTASINESEEQSQCIDETCWTDVDFLQTNKPPAWAYPVSKTLAEQAALQYGDEQGLDVVTINPVLVAGCSINPNVPQTIEVVLSLLTGISKDLEAFNIIQMVYGFASLVHVDD

HMMPfam: PF01370
IPR001509
13-262 Epimerase
NAD-dependent epimerase/dehydratase

CVTGATGFVASSLVKHLLHQGYTVHATVRDPENEGKVRHLLDIPGAGERLKVFRADLLEEGSFDAAIDRCDGVFHVASPVNFTPKNPESDVLNPAVDGTLNVLRACTKAKTVKRVVVTSSASTASINESEEQSQCIDETCWTDVDFLQTNKPPAWAYPVSKTLAEQAALQYGDEQGLDVVTINPVLVAGCSINPNVPQTIEVVLSLLTGISKDLEAFNIIQMVYGFASLVHVDDVCSAQIFLMDKPSAVG

Seg: seg
117-137 seg

ACTKAKTVKRVVVTSSASTAS






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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