PRGDB00000029 (Asc-1)

Asc-1
Gene Type	Reference_R-Genes,_manually_curated
GenBank	7688741 (AF198177)
Gene Class	Other
Domain Type
Chromosome	3
Gene Species	Solanum lycopersicum
	Comment?

Lycopersicon esculentum ASC1 (Asc) gene, Asc-1 allele, complete cds.

DNA Sequence

ATGAAAAACCTGGATCACATCGCTGCTTCGGTTGATTGGGAGAAAGAGTCTCTCCCTGAGTACCAGGATTTGATATTTCTCTTATTTTTTGCTCTCTTCTTCCCCGTTCTTCGATTCATACTCGACAGATTTGTTTTCGAGGCATTGGCTAAGCGTATGATTTTTGGAAAGAAGACGGTTGTAAATATTAACGGTCGTGAAGAGAGGAAGAAGATCAACAAATTCAAAGAGTCAGCATGGAAATTTGTATATTTTCTATCTGCTGAGCTACTTGCACTTTCTGTGACTTGTAATGAGCCTTGGTTCACAGATAGTCGGTATTTCTGGGCAGGACCTGGAGATGTGGTTTGGCCTAATTTGAAAATGAAATTAAAGCTAAAATTATTGTACATGTATGCTGGAGGATTCTACTTTTACTCCATATTCGCAACACTTTATTGGGAAACAAGACGCTATGATTTTGCTGCGCAGATAATTCATCATGTAACAACAGTGTCACTCATTGTGTTGTCTTACGTATACGGGTTTGCGCGTATTGGATCAGTGGTTCTAGCACTTCATGACGGAAGTGATGTATTCATGGAAATTGCAAAGATGTCGAAATACAGTGGCTTTGATTTGATTGCTGATATTTTCTTCTCTCTTTTCGCGTTGGTTTTTACATCACTTCGTATAATCTGCTATCCCTTCTGGATAATCCGAAGCACATGCTACGAACTTCTTTATGTATTGGATATACAGAAGGAACGGACTACTGGGATCATACTTTACTTTGTTTTCAATGCATTGCTGATATGCTTGCTGGTTCTTCACCTCTTTTGGTTCAAAATCATACTGCGGATGGTCAAGAACCAAATCCTATCAAGAGGCCACATTACTGATGATGTTCGAGAAGATTCTGAATCTGATGATGACCACAAAGACTGA

Protein sequences

Name	Description	Sequence
ASC1	ASC1 [Lycopersicon esculentum].	MKNLDHIAASVDWEKESLPEYQDLIFLLFFALFFPVLRFILDRFVFEALAKRMIFGKKTVVNINGREERKKINKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQILSRGHITDDVREDSESDDDHKD

Domains

Domain	Start-End	Description	Sequence
HMMPIR: PIRSF005225 IPR016439	1-306	LAG1_LAC1 Longevity assurance, LAG1/LAC1	MKNLDHIAASVDWEKESLPEYQDLIFLLFFALFFPVLRFILDRFVFEALAKRMIFGKKTVVNINGREERKKINKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQILSRGHITDDVREDSESDDDH
HMMPanther: PTHR12560	21-308	PTHR12560,LONGEVITY ASSURANCE FACTOR 1 (LAG1)	YQDLIFLLFFALFFPVLRFILDRFVFEALAKRMIFGKKTVVNINGREERKKINKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQILSRGHITDDVREDSESDDDHKD
HMMSmart: SM00724 IPR006634	73-287	TLC TRAM/LAG1/CLN8 homology domain	NKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQIL
ProfileScan: PS50922 IPR006634	73-287	TLC TRAM/LAG1/CLN8 homology domain	NKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQIL
HMMPfam: PF03798 IPR006634	74-280	TRAM_LAG1_CLN8 TRAM/LAG1/CLN8 homology domain	KFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILR

Diseases

Disease	Pathogen	Avirulence gene
Alternaria Stem Canker	Alternaria alternata

List of References

B F Brandwagt, L A Mesbah, F L Takken, P L Laurent, T J Kneppers, J Hille, H J Nijkamp
A longevity assurance gene homolog of tomato mediates resistance to Alternaria alternata f. sp. lycopersici toxins and fumonisin B1.
Proc. Natl. Acad. Sci. U.S.A.: 2000, 97(9);4961-6
PubMed:10781105 WorldCat.org (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show