PRGDB00000029 (Asc-1)
Asc-1 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 7688741 (AF198177) |
Gene Class | Other |
Domain Type | |
Chromosome | 3 |
Gene Species | Solanum lycopersicum |
DNA Sequence
ATGAAAAACCTGGATCACATCGCTGCTTCGGTTGATTGGGAGAAAGAGTCTCTCCCTGAGTACCAGGATTTGATATTTCTCTTATTTTTTGCTCTCTTCTTCCCCGTTCTTCGATTCATACTCGACAGATTTGTTTTCGAGGCATTGGCTAAGCGTATGATTTTTGGAAAGAAGACGGTTGTAAATATTAACGGTCGTGAAGAGAGGAAGAAGATCAACAAATTCAAAGAGTCAGCATGGAAATTTGTATATTTTCTATCTGCTGAGCTACTTGCACTTTCTGTGACTTGTAATGAGCCTTGGTTCACAGATAGTCGGTATTTCTGGGCAGGACCTGGAGATGTGGTTTGGCCTAATTTGAAAATGAAATTAAAGCTAAAATTATTGTACATGTATGCTGGAGGATTCTACTTTTACTCCATATTCGCAACACTTTATTGGGAAACAAGACGCTATGATTTTGCTGCGCAGATAATTCATCATGTAACAACAGTGTCACTCATTGTGTTGTCTTACGTATACGGGTTTGCGCGTATTGGATCAGTGGTTCTAGCACTTCATGACGGAAGTGATGTATTCATGGAAATTGCAAAGATGTCGAAATACAGTGGCTTTGATTTGATTGCTGATATTTTCTTCTCTCTTTTCGCGTTGGTTTTTACATCACTTCGTATAATCTGCTATCCCTTCTGGATAATCCGAAGCACATGCTACGAACTTCTTTATGTATTGGATATACAGAAGGAACGGACTACTGGGATCATACTTTACTTTGTTTTCAATGCATTGCTGATATGCTTGCTGGTTCTTCACCTCTTTTGGTTCAAAATCATACTGCGGATGGTCAAGAACCAAATCCTATCAAGAGGCCACATTACTGATGATGTTCGAGAAGATTCTGAATCTGATGATGACCACAAAGACTGA
Protein sequences
Name | Description | Sequence |
---|---|---|
ASC1 | ASC1 [Lycopersicon esculentum]. | MKNLDHIAASVDWEKESLPEYQDLIFLLFFALFFPVLRFILDRFVFEALAKRMIFGKKTVVNINGREERKKINKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQILSRGHITDDVREDSESDDDHKD |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPIR: PIRSF005225 IPR016439
|
1-306 | LAG1_LAC1 Longevity assurance, LAG1/LAC1
|
MKNLDHIAASVDWEKESLPEYQDLIFLLFFALFFPVLRFILDRFVFEALAKRMIFGKKTVVNINGREERKKINKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQILSRGHITDDVREDSESDDDH |
HMMPanther: PTHR12560 | 21-308 | PTHR12560,LONGEVITY ASSURANCE FACTOR 1 (LAG1) | YQDLIFLLFFALFFPVLRFILDRFVFEALAKRMIFGKKTVVNINGREERKKINKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQILSRGHITDDVREDSESDDDHKD |
HMMSmart: SM00724 IPR006634
|
73-287 | TLC TRAM/LAG1/CLN8 homology domain
|
NKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQIL |
ProfileScan: PS50922 IPR006634
|
73-287 | TLC TRAM/LAG1/CLN8 homology domain
|
NKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQIL |
HMMPfam: PF03798 IPR006634
|
74-280 | TRAM_LAG1_CLN8 TRAM/LAG1/CLN8 homology domain
|
KFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILR |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Alternaria Stem Canker | Alternaria alternata |
List of References
B F Brandwagt, L A Mesbah, F L Takken, P L Laurent, T J Kneppers, J Hille, H J Nijkamp
A longevity assurance gene homolog of tomato mediates resistance to Alternaria alternata f. sp. lycopersici toxins and fumonisin B1.
Proc. Natl. Acad. Sci. U.S.A.: 2000, 97(9);4961-6
PubMed:10781105
WorldCat.org
(P p)
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