PRGDB00000034 (Cf4A)
| Cf4A | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 2808679 (AJ002235) |
| Gene Class | RLP |
| Domain Type | LRR, LRR, LRR, Ser-Thr Kinase, Receptor-Like Kinase |
| Chromosome | 1 |
| Gene Species | Solanum habrochaites |
DNA Sequence
ATGGGTTGTGTAAAACTTATATTTTTCATGCTATATGTCTTTCTCTTTCAACTTGTTTCCTCGTCATCCTTACCTCATTTGTGCCCCGAAGATCAAGCTCTTGCTCTTCTACAATTCAAGAACATGTTTACCATTAATCCTAATGCTTCTAATTATTGTTACGACAGAAGAACTCTTTCTTGGAACAAAAGCACAAGTTGCTGCTCATGGGATGGCGTTCATTGTGACGAGACGACAGGACAAGTGATTGAGCTTGATCTCGGTTGCAGCCAACTTCAAGGCAAGTTTCATTCCAATAGTAGCCTCTTTCAACTCTCCAATCTCAAAAGGCTTGATTTGTCTTCTAATGATTTCACTGGATCGCCCATTTCACCTAAATTTGGTGAGTTTTCAGATTTGACGCATCTCGATTTGTCGGATTCTAATTTTACGGGTGTAATCCCTTCTGAAATCTCTCACCTTTCTAAACTACACGTTCTTCGTATCAGTGATCAATATAAGCTTAGTCTTGGGCCTCACAATTTTGAATTGCTCCTTAAGAACTTGACCCAATTAAGAGAGCTCCACCTTGAATCTGTCAACATCTCTTCCACCATTCCTTCCAATTTCTCCTTTCATTTAACAAATCTACGGCTTTCATACACAGAGTTACGTGGGGTATTGCCCGAAAGAGTTTTCCACCTTTCCAACTTAGAATTGCTAGATTTATCATATAATCCCCAGCTCACGGTTAGGTTTCCCACAACCATATGGAATAGCAGTGCATCACTCGTGAAGTTATATCTCAGTCGTGTGAATATTGCTGGTAATATACCTGATTCATTTAGCTATCTAACTGCACTTCATGAGTTGGACATGGTTTATACTAATCTATCAGGGCCTATTCCTAAACCTTTATGGAATCTCACCAACATTGAGAGTTTGGACCTTGATTATAACCATCTTGAAGGACCAATTCCCCAGCTCCCAATATTTGAAAAGCTCAAGAGTTTAACACTTGGAAATAACAATTTGGATGGCGGACTTGAGTTCTTATCCTTTAACAGAAGCTGGACCCAACTTGAAGAATTAGATTTTTCATCCAATTCCCTAACTGGTCCAATTCCATCCAACGTAAGCGGACTGCGAAATCTACAATCACTCTACTTGTCATCAAACAACTTGAATGGGAGTATACCTTCCTGGATATTCGATCTTCCGTCACTAAGATCTTTAGACTTGAGCAATAACACTTTCAGTGGAAAAATTCAAGAGTTCAAGTCCAAAACATTAAGTATCGTTACTCTAAAACAAAATCAGCTGAAAGGTCCTATTCCGAATTCACTCCTAAACCAGGAGAGCCTACAATTCCTTCTCCTTTCACACAATAATATCAGTGGACATATTTCTTCATCTATCTGCAATTTGAAAATATTGATGGTGTTAGACTTGGGAAGTAACAATTTGGAGGGAACAATCCCACAATGCGTGGTTGAGAGGAACGAATACCTTTCGCATTTGGATTTGAGCAACAACAGACTTAGTGGGACAATCAATACAACTTTTAGTATTGGAAACTCTTTCAGGGCCATTAGCTTGCACGGGAATAAGCTAACGGGGAAAGTCCCACGATCTTTGATCAATTGCAAGTATTTGACACTACTTGATCTAGGTAACAATCAGTTGAATGACACATTTCCAAACTGGTTGGGCTACCTATCTCAATTGAAGATTTTAAGCTTGAGATCAAATAAGTTGCATGGTCCCATCAAATCTTCAGGGAATACAAACCTGTTTATGCGTCTTCAAATTCTTGATCTATCATCTAATGGATTTAGTGGGAATTTACCCGAAAGAATTTTGGGGAATTTGCAAACCATGAAGAAATTTGATGAGAATACAAGATTCCCAGAGTATATTTCTGATCGATATATTTATTATGATTATTTGACGACAATTACTACAAAGGGACAAGATTATGATTCTGTTAGAATTTTTACTTTTAACATGATTATCAATCTCTCAAAGAACAGATTTGAAGGTCGTATTCCAAGCATTATTGGAGATCTTGTTGGACTTCGTACGTTGAACTTGTCTCACAATGTCTTGGAAGGTCATATACCGGTATCATTGCAAAATTTATCAGTACTCGAATCATTGGATCTCTCATCTAATAAAATCAGCGGAGCAATTCCGCAGCAGCTTGCATCCCTCACATTCCTTGAAGTCTTAAATCTCTCTCACAATCATCTGGTTGGATGCATCCCCAAAGGAAAACAATTTGATTCGTTCGGGAACACTTCGTACCAAGGGAATGATGGGTTACGCGGATTTCCACTCTCAACACATTGTGGCGGTGATGATCAAGTGACAACTCCAGCGGAGCTAGATCAACAACAAGAAGAAGAAGATTCACCAATGATCAGTTGGCAGGGGGTTCTCATGGGTTACGGTTGTGGACTTGTTATTGGTTTGTCCGTAATATACATAATGTGGTCAACTCAATATCCAGCATGGTTTTCGAGGATGGATTTAAAGTTGGAACGCATAATTACTACGAGAATGAAAAAGCACAAGAAAAGATATTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Hcr9-4E | Hcr9-4E [Solanum habrochaites]. | MGCVKLIFFMLYVFLFQLVSSSSLPHLCPEDQALALLQFKNMFTINPNASNYCYDRRTLSWNKSTSCCSWDGVHCDETTGQVIELDLGCSQLQGKFHSNSSLFQLSNLKRLDLSSNDFTGSPISPKFGEFSDLTHLDLSDSNFTGVIPSEISHLSKLHVLRISDQYKLSLGPHNFELLLKNLTQLRELHLESVNISSTIPSNFSFHLTNLRLSYTELRGVLPERVFHLSNLELLDLSYNPQLTVRFPTTIWNSSASLVKLYLSRVNIAGNIPDSFSYLTALHELDMVYTNLSGPIPKPLWNLTNIESLDLDYNHLEGPIPQLPIFEKLKSLTLGNNNLDGGLEFLSFNRSWTQLEELDFSSNSLTGPIPSNVSGLRNLQSLYLSSNNLNGSIPSWIFDLPSLRSLDLSNNTFSGKIQEFKSKTLSIVTLKQNQLKGPIPNSLLNQESLQFLLLSHNNISGHISSSICNLKILMVLDLGSNNLEGTIPQCVVERNEYLSHLDLSNNRLSGTINTTFSIGNSFRAISLHGNKLTGKVPRSLINCKYLTLLDLGNNQLNDTFPNWLGYLSQLKILSLRSNKLHGPIKSSGNTNLFMRLQILDLSSNGFSGNLPERILGNLQTMKKFDENTRFPEYISDRYIYYDYLTTITTKGQDYDSVRIFTFNMIINLSKNRFEGRIPSIIGDLVGLRTLNLSHNVLEGHIPVSLQNLSVLESLDLSSNKISGAIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGNDGLRGFPLSTHCGGDDQVTTPAELDQQQEEEDSPMISWQGVLMGYGCGLVIGLSVIYIMWSTQYPAWFSRMDLKLERIITTRMKKHKKRY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF473 | 1-775 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | MGCVKLIFFMLYVFLFQLVSSSSLPHLCPEDQALALLQFKNMFTINPNASNYCYDRRTLSWNKSTSCCSWDGVHCDETTGQVIELDLGCSQLQGKFHSNSSLFQLSNLKRLDLSSNDFTGSPISPKFGEFSDLTHLDLSDSNFTGVIPSEISHLSKLHVLRISDQYKLSLGPHNFELLLKNLTQLRELHLESVNISSTIPSNFSFHLTNLRLSYTELRGVLPERVFHLSNLELLDLSYNPQLTVRFPTTIWNSSASLVKLYLSRVNIAGNIPDSFSYLTALHELDMVYTNLSGPIPKPLWNLTNIESLDLDYNHLEGPIPQLPIFEKLKSLTLGNNNLDGGLEFLSFNRSWTQLEELDFSSNSLTGPIPSNVSGLRNLQSLYLSSNNLNGSIPSWIFDLPSLRSLDLSNNTFSGKIQEFKSKTLSIVTLKQNQLKGPIPNSLLNQESLQFLLLSHNNISGHISSSICNLKILMVLDLGSNNLEGTIPQCVVERNEYLSHLDLSNNRLSGTINTTFSIGNSFRAISLHGNKLTGKVPRSLINCKYLTLLDLGNNQLNDTFPNWLGYLSQLKILSLRSNKLHGPIKSSGNTNLFMRLQILDLSSNGFSGNLPERILGNLQTMKKFDENTRFPEYISDRYIYYDYLTTITTKGQDYDSVRIFTFNMIINLSKNRFEGRIPSIIGDLVGLRTLNLSHNVLEGHIPVSLQNLSVLESLDLSSNKISGAIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGNDGLRGFPLST |
| HMMPanther: PTHR24420 | 1-775 | FAMILY NOT NAMED,FAMILY NOT NAMED | MGCVKLIFFMLYVFLFQLVSSSSLPHLCPEDQALALLQFKNMFTINPNASNYCYDRRTLSWNKSTSCCSWDGVHCDETTGQVIELDLGCSQLQGKFHSNSSLFQLSNLKRLDLSSNDFTGSPISPKFGEFSDLTHLDLSDSNFTGVIPSEISHLSKLHVLRISDQYKLSLGPHNFELLLKNLTQLRELHLESVNISSTIPSNFSFHLTNLRLSYTELRGVLPERVFHLSNLELLDLSYNPQLTVRFPTTIWNSSASLVKLYLSRVNIAGNIPDSFSYLTALHELDMVYTNLSGPIPKPLWNLTNIESLDLDYNHLEGPIPQLPIFEKLKSLTLGNNNLDGGLEFLSFNRSWTQLEELDFSSNSLTGPIPSNVSGLRNLQSLYLSSNNLNGSIPSWIFDLPSLRSLDLSNNTFSGKIQEFKSKTLSIVTLKQNQLKGPIPNSLLNQESLQFLLLSHNNISGHISSSICNLKILMVLDLGSNNLEGTIPQCVVERNEYLSHLDLSNNRLSGTINTTFSIGNSFRAISLHGNKLTGKVPRSLINCKYLTLLDLGNNQLNDTFPNWLGYLSQLKILSLRSNKLHGPIKSSGNTNLFMRLQILDLSSNGFSGNLPERILGNLQTMKKFDENTRFPEYISDRYIYYDYLTTITTKGQDYDSVRIFTFNMIINLSKNRFEGRIPSIIGDLVGLRTLNLSHNVLEGHIPVSLQNLSVLESLDLSSNKISGAIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGNDGLRGFPLST |
| Seg: seg | 11-24 | seg | LYVFLFQLVSSSSL |
| Gene3D: G3DSA:3.80.10.10 | 28-334 | no description | CPEDQALALLQFKNMFTINPNASNYCYDRRTLSWNKSTSCCSWDGVHCDETTGQVIELDLGCSQLQGKFHSNSSLFQLSNLKRLDLSSNDFTGSPISPKFGEFSDLTHLDLSDSNFTGVIPSEISHLSKLHVLRISDQYKLSLGPHNFELLLKNLTQLRELHLESVNISSTIPSNFSFHLTNLRLSYTELRGVLPERVFHLSNLELLDLSYNPQLTVRFPTTIWNSSASLVKLYLSRVNIAGNIPDSFSYLTALHELDMVYTNLSGPIPKPLWNLTNIESLDLDYNHLEGPIPQLPIFEKLKSLTLG |
| HMMPfam: PF08263 IPR013210
|
30-76 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
EDQALALLQFKNMFTINPNASNYCYDRRTLSWNKSTSCCSWDGVHCD |
| superfamily: SSF52047 | 84-413 | RNI-like,LRR | ELDLGCSQLQGKFHSNSSLFQLSNLKRLDLSSNDFTGSPISPKFGEFSDLTHLDLSDSNFTGVIPSEISHLSKLHVLRISDQYKLSLGPHNFELLLKNLTQLRELHLESVNISSTIPSNFSFHLTNLRLSYTELRGVLPERVFHLSNLELLDLSYNPQLTVRFPTTIWNSSASLVKLYLSRVNIAGNIPDSFSYLTALHELDMVYTNLSGPIPKPLWNLTNIESLDLDYNHLEGPIPQLPIFEKLKSLTLGNNNLDGGLEFLSFNRSWTQLEELDFSSNSLTGPIPSNVSGLRNLQSLYLSSNNLNGSIPSWIFDLPSLRSLDLSNNTFS |
| HMMSmart: SM00369 IPR003591
|
105-130 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSNLKRLDLSSNDFTGSPISPKFGEF |
| HMMPfam: PF13504 | 106-120 | LRR_7,Leucine rich repeat | SNLKRLDLSSNDFTG |
| HMMPfam: PF00560 IPR001611
|
133-154 | LRR_1 Leucine-rich repeat
|
LTHLDLSDSNFTGVIPSEISHL |
| HMMSmart: SM00369 IPR003591
|
182-206 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTQLRELHLESVNISSTIPSNFSFH |
| HMMSmart: SM00369 IPR003591
|
228-253 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSNLELLDLSYNPQLTVRFPTTIWNS |
| HMMPfam: PF00560 IPR001611
|
230-249 | LRR_1 Leucine-rich repeat
|
NLELLDLSYNPQLTVRFPTT |
| HMMSmart: SM00369 IPR003591
|
302-327 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTNIESLDLDYNHLEGPIPQLPIFEK |
| Seg: seg | 333-342 | seg | LGNNNLDGGL |
| Gene3D: G3DSA:3.80.10.10 | 335-505 | no description | NNNLDGGLEFLSFNRSWTQLEELDFSSNSLTGPIPSNVSGLRNLQSLYLSSNNLNGSIPSWIFDLPSLRSLDLSNNTFSGKIQEFKSKTLSIVTLKQNQLKGPIPNSLLNQESLQFLLLSHNNISGHISSSICNLKILMVLDLGSNNLEGTIPQCVVERNEYLSHLDLSNN |
| superfamily: SSF52058 | 349-766 | L domain-like,LRR | RSWTQLEELDFSSNSLTGPIPSNVSGLRNLQSLYLSSNNLNGSIPSWIFDLPSLRSLDLSNNTFSGKIQEFKSKTLSIVTLKQNQLKGPIPNSLLNQESLQFLLLSHNNISGHISSSICNLKILMVLDLGSNNLEGTIPQCVVERNEYLSHLDLSNNRLSGTINTTFSIGNSFRAISLHGNKLTGKVPRSLINCKYLTLLDLGNNQLNDTFPNWLGYLSQLKILSLRSNKLHGPIKSSGNTNLFMRLQILDLSSNGFSGNLPERILGNLQTMKKFDENTRFPEYISDRYIYYDYLTTITTKGQDYDSVRIFTFNMIINLSKNRFEGRIPSIIGDLVGLRTLNLSHNVLEGHIPVSLQNLSVLESLDLSSNKISGAIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGND |
| HMMPfam: PF13855 | 353-410 | LRR_8,Leucine rich repeat | QLEELDFSSNSLTGPIPSNVSGLRNLQSLYLSSNNLNGSIPSWIFDLPSLRSLDLSNN |
| HMMSmart: SM00369 IPR003591
|
375-399 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LRNLQSLYLSSNNLNGSIPSWIFDL |
| Seg: seg | 377-391 | seg | NLQSLYLSSNNLNGS |
| Seg: seg | 440-466 | seg | NSLLNQESLQFLLLSHNNISGHISSSI |
| HMMPfam: PF00560 IPR001611
|
447-469 | LRR_1 Leucine-rich repeat
|
SLQFLLLSHNNISGHISSSICNL |
| HMMSmart: SM00369 IPR003591
|
469-493 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LKILMVLDLGSNNLEGTIPQCVVER |
| HMMPfam: PF00560 IPR001611
|
497-513 | LRR_1 Leucine-rich repeat
|
LSHLDLSNNRLSGTINT |
| FPrintScan: PR00019 | 497-510 | LEURICHRPT,Leucine-rich repeat signature | LSHLDLSNNRLSGT |
| HMMPfam: PF13516 | 542-562 | LRR_6,Leucine Rich repeat | CKYLTLLDLGNNQLNDTFPNW |
| HMMSmart: SM00369 IPR003591
|
592-616 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
FMRLQILDLSSNGFSGNLPERILGN |
| HMMPfam: PF00560 IPR001611
|
594-617 | LRR_1 Leucine-rich repeat
|
RLQILDLSSNGFSGNLPERILGNL |
| Seg: seg | 637-648 | seg | YIYYDYLTTITT |
| Gene3D: G3DSA:3.80.10.10 | 664-774 | no description | IINLSKNRFEGRIPSIIGDLVGLRTLNLSHNVLEGHIPVSLQNLSVLESLDLSSNKISGAIPQQLASLTFLEVLNLSHNHLVGCIPKGKQFDSFGNTSYQGNDGLRGFPLS |
| HMMSmart: SM00369 IPR003591
|
683-706 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LVGLRTLNLSHNVLEGHIPVSLQN |
| HMMPfam: PF13855 | 685-744 | LRR_8,Leucine rich repeat | GLRTLNLSHNVLEGHIPVSLQNLSVLESLDLSSNKISGAIPQQLASLTFLEVLNLSHNHL |
| HMMSmart: SM00369 IPR003591
|
707-730 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSVLESLDLSSNKISGAIPQQLAS |
| FPrintScan: PR00019 | 731-744 | LEURICHRPT,Leucine-rich repeat signature | LTFLEVLNLSHNHL |
| HMMSmart: SM00369 IPR003591
|
731-756 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTFLEVLNLSHNHLVGCIPKGKQFDS |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Leaf Mould | Passalora fulva | PRGAV00000034 |
List of References
M Parniske, K E Hammond-Kosack, C Golstein, C M Thomas, D A Jones, K Harrison, B B Wulff, J D Jones
Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato.
Cell: 1997, 91(6);821-32
PubMed:9413991
WorldCat.org
(P p)
List of Contributions
There has not been any contribution yet.
