PRGDB00000038 (Gpa2)

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Gpa2
Gene Type Reference_R-Genes,_manually_curated
GenBank 6164968 (AF195939)
Gene Class CNL
Domain Type LRR, NBS, Others
Chromosome 12
Gene Species Solanum tuberosum

Comment?

Solanum tuberosum disease resistance protein Gpa2 gene, complete cds.

DNA Sequence

ATGGCTTATGCTGCTGTTACTTCCCTTATGAGAACCATACATCAATCAATGGAACTTACTGGATGTGATTTGCAACCGTTTTATGAAAAGCTCAAATCTTTGAGAGCTATTCTGGAGAAATCCTGCAATATAATGGGCGATCATGAGGGGTTAACAATCTTGGAAGTTGAAATCATAGAGGTAGCATACACAACAGAAGATATGGTTGACTCGGAATCAAGAAATGTTTTTTTAGCACGGAATGTGGGGAAAAGAAGCAGGGCTATGTGGGGGATTTTTTTCGTCTTGGAACAAGCACTAGAATGCATTGATTCCACCGTGAAACAGTGGATGGCAACATCGGACAGCATGAAAGATCTAAAACCACAAACTAGCTCACTTGTCAGTTTACCTGAACATGATGTTGAGCAGCCCGAGAATATAATGGTTGGCCGTGAAAATGAATTTGAGATGATGCTGGATCAACTTGCTAGAGGAGGAAGGGAACTAGAAGTTGTCTCAATCGTAGGGATGGGAGGCATCGGGAAAACAACTTTGGCTGCAAAACTCTATAGTGATCCTTACATTATGTCTCGATTTGATATTCGTGCAAAAGCAACTGTTTCACAAGAGTATTGTGTGAGAAATGTACTCCTAGGCCTTCTTTCTTTGACAAGTGATGAACCTGATTATCAGCTAGCGGACCAACTGCAAAAGCATCTGAAAGGCAGGAGATACTTGGTAGTCATTGATGACATATGGACTACAGAAGCTTGGGATGATATAAAACTATGTTTCCCAGACTGCGATAATGGAAGCAGAATACTCCTGACTACTCGGAATGTGGAAGTGGCTGAATATGCTAGCTCAGGTAAGCCTCCTCATCACATGCGCCTCATGAATTTTGACGAAAGTTGGAATTTACTACACAAAAAGATCTTTGAAAAAGAAGGTTCTTATTCTCCTGAATTTGAAAATATTGGGAAACAAATTGCATTAAAATGTGGAGGGTTACCTCTAGCAATTACTTTGATTGCTGGACTTCTCTCCAAAATCAGTAAAACATTGGATGAGTGGCAAAATGTTGCGGAGAATGTACGTTCGGTGGTAAGCACAGATCTTGAAGCAAAATGCATGAGAGTGTTGGCTTTGAGTTACCATCACTTGCCTTCTCACCTAAAACCGTGTTTTCTGTATTTTGCAATTTTCGCAGAGGATGAACGGATTTATGTAAATAAACTTGTTGAGTTATGGGCCGTAGAGGGGTTTTTGAATGAAGAAGAGGGAAAAAGCATAGAAGAGGTGGCAGAAACATGTATAAACGAACTTGTAGATAGAAGTCTAATTTCTATCCACAATGTGAGTTTTGATGGGGAAACACAGAGATGTGGAATGCATGATGTGACCCGTGAACTCTGTTTGAGGGAAGCTCGAAACATGAATTTTGTGAATGTTATCAGAGGAAAGAGTGATCAAAATTCATGTGCACAATCCATGCAGTGTTCCTTTAAGAGTCGAAGTCGGATCAGTATCCATAATGAGGAAGAATTGGTTTGGTGTCGTAACAGCGAGGCTCATTCTATCATCACGTTGTGTATATTCAAATGCGTCACACTGGAATTGTCTTTCAAGCTAGTAAGAGTACTAGATCTTGGTTTGACTACATGCCCAATTTTTCCCAGTGGAGTACTTTCTCTAATTCATTTGAGATACCTATCTTTGCGTTTTAATCCTCGCTTACAGCAGTATCGAGGATCGAAAGAAGCTGTTCCCTCATCAATAATAGACATTCCTCTATCGATATCAAGCCTATGCTATCTGCAAACTTTTAAACTTTACCATCCATTTCCCAATTGTTATCCTTTCATATTACCATCGGAAATTTTGACAATGCCACAATTGAGGAAGCTGTGTATGGGCTGGAATTACTTGCGGAGTCATGAGCCTACAGAGAACAGATTGGTTTTGAAAAGTTTGCAATGCCTCAATGAATTGAATCCTCGGTATTGTACAGGGTCTTTTTTAAGACTATTTCCCAATTTAAAGAAGTTGGAAGTATTTGGCGTCAAAGAGGACTTTCGCAATCACAAGGACCTGTATGATTTTCGCTACTTATATCAGCTCGAGAAATTGGCATTTAGTACTTATTATTCATCTTCTGCTTGCTTTCTAAAAAACACTGCACCTTTAGGTTCTACTCCGCAAGATCCTCTGAGGTTTCAGATGGAAACATTGCACTTAGAGACTCATTCCAGGGCAACTGCACCTCCAACTGATGTTCCAACTTTCCTCTTACCTCCTCCGGATTGTTTTCCACAAAACCTTAAGAGTTTAACTTTTAGCGGAGATTTCTTTTTGGCATGGAAGGATTTGAGCATTGTTGGTAAATTACCCAAACTCGAGGTCCTTCAACTATCACACAATGCCTTCAAAGGCGAGGAGTGGGAAGTAGTTGAGGAAGGGTTTCCTCACTTGAAGTTCTTGTTTCTGGATAGCATATACATTCGGTACTGGAGAGCTAGTAGTGATCACTTTCCATACCTTGAACGACTTTTTCTTAGCGATTGCTTTTATTTGGATTCAATCCCTCGAGATTTTGCAGATATAACCACACTAGCTCTTATTGATATATTTCGCTGCCAACAATCTGTTGGGAATTCCGCCAAGCAAATTCAACAGGACATTCAAGACAACTATGGAAGCTCTATCGAGGTCCATACTCGTTATCTTTATCGAAATGGAGCATTTTTGGTAGTGTGA


Protein sequences

Name Description Sequence
disease resistance protein Gpa2 disease resistance protein Gpa2 [Solanum tuberosum].

MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNIMGDHEGLTILEVEIIEVAYTTEDMVDSESRNVFLARNVGKRSRAMWGIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPEHDVEQPENIMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLAAKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDYQLADQLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCDNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITLIAGLLSKISKTLDEWQNVAENVRSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVNKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNVSFDGETQRCGMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQCSFKSRSRISIHNEEELVWCRNSEAHSIITLCIFKCVTLELSFKLVRVLDLGLTTCPIFPSGVLSLIHLRYLSLRFNPRLQQYRGSKEAVPSSIIDIPLSISSLCYLQTFKLYHPFPNCYPFILPSEILTMPQLRKLCMGWNYLRSHEPTENRLVLKSLQCLNELNPRYCTGSFLRLFPNLKKLEVFGVKEDFRNHKDLYDFRYLYQLEKLAFSTYYSSSACFLKNTAPLGSTPQDPLRFQMETLHLETHSRATAPPTDVPTFLLPPPDCFPQNLKSLTFSGDFFLAWKDLSIVGKLPKLEVLQLSHNAFKGEEWEVVEEGFPHLKFLFLDSIYIRYWRASSDHFPYLERLFLSDCFYLDSIPRDFADITTLALIDIFRCQQSVGNSAKQIQQDIQDNYGSSIEVHTRYLYRNGAFLVV

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF129
1-480 PTHR11017:SF129

MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNIMGDHEGLTILEVEIIEVAYTTEDMVDSESRNVFLARNVGKRSRAMWGIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPEHDVEQPENIMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLAAKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDYQLADQLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCDNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITLIAGLLSKISKTLDEWQNVAENVRSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVNKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNVSFDGETQRCGMHDVTRELCLREARNMNFVNVIR

HMMPanther: PTHR11017
1-480 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNIMGDHEGLTILEVEIIEVAYTTEDMVDSESRNVFLARNVGKRSRAMWGIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPEHDVEQPENIMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLAAKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDYQLADQLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCDNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITLIAGLLSKISKTLDEWQNVAENVRSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVNKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNVSFDGETQRCGMHDVTRELCLREARNMNFVNVIR

superfamily: SSF52540
117-367 SSF52540

MKDLKPQTSSLVSLPEHDVEQPENIMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLAAKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDYQLADQLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCDNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITLIAGLLSKISKTLDEWQNVAENVRSVVSTDL

HMMPfam: PF00931
IPR002182
145-420 NB-ARC,NBS
NB-ARC

RENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLAAKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDYQLADQLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCDNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITLIAGLLSKISKTLDEWQNVAENVRSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVNKLVELWAVEGFLNEE

Gene3D: G3DSA:3.40.50.300
150-278 G3DSA:3.40.50.300

EMMLDQLARGGRELEVVSIVGMGGIGKTTLAAKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDYQLADQLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCDNGSRILLTTRNVEVA

FPrintScan: PR00364
IPR000767
165-180 DISEASERSIST
Disease resistance protein

VVSIVGMGGIGKTTLA

FPrintScan: PR00364
IPR000767
233-247 DISEASERSIST
Disease resistance protein

HLKGRRYLVVIDDIW

FPrintScan: PR00364
IPR000767
328-342 DISEASERSIST
Disease resistance protein

CGGLPLAITLIAGLL

superfamily: SSF52058
457-874 SSF52058,LRR

GMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQCSFKSRSRISIHNEEELVWCRNSEAHSIITLCIFKCVTLELSFKLVRVLDLGLTTCPIFPSGVLSLIHLRYLSLRFNPRLQQYRGSKEAVPSSIIDIPLSISSLCYLQTFKLYHPFPNCYPFILPSEILTMPQLRKLCMGWNYLRSHEPTENRLVLKSLQCLNELNPRYCTGSFLRLFPNLKKLEVFGVKEDFRNHKDLYDFRYLYQLEKLAFSTYYSSSACFLKNTAPLGSTPQDPLRFQMETLHLETHSRATAPPTDVPTFLLPPPDCFPQNLKSLTFSGDFFLAWKDLSIVGKLPKLEVLQLSHNAFKGEEWEVVEEGFPHLKFLFLDSIYIRYWRASSDHFPYLERLFLSDCFYLDSIPRDFADITTLALIDIFRCQ

Gene3D: G3DSA:3.80.10.10
535-677 G3DSA:3.80.10.10

SFKLVRVLDLGLTTCPIFPSGVLSLIHLRYLSLRFNPRLQQYRGSKEAVPSSIIDIPLSISSLCYLQTFKLYHPFPNCYPFILPSEILTMPQLRKLCMGWNYLRSHEPTENRLVLKSLQCLNELNPRYCTGSFLRLFPNLKKL

Gene3D: G3DSA:3.80.10.10
768-876 G3DSA:3.80.10.10

LKSLTFSGDFFLAWKDLSIVGKLPKLEVLQLSHNAFKGEEWEVVEEGFPHLKFLFLDSIYIRYWRASSDHFPYLERLFLSDCFYLDSIPRDFADITTLALIDIFRCQQS

FPrintScan: PR00364
IPR000767
788-804 DISEASERSIST
Disease resistance protein

GKLPKLEVLQLSHNAFK


Diseases

Disease Pathogen Avirulence gene
Yellow potato cyst nematode Globodera




List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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