PRGDB00000039 (Gro1.4)
| Gro1.4 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 37781225 (AY196151) |
| Gene Class | TNL |
| Domain Type | LRR, NBS, LRR, TIR, Others |
| Chromosome | 7 |
| Gene Species | Solanum tuberosum |
DNA Sequence
ATGAATCAGGAAAGTTCATTGCTTCCATCCCCAGATATTATTCGATGGAGTTACGATGTTTTCTTAAGTTTTAGAGGTGAAGATGTACGCAAAACATTTGTTGACCATCTGTACCTTGCTCTGGAACAAAAGTGCATTAATACCTTTAAAGATGACGAGAAACTAGAGAAAGGAAAGTTCATTTCACCGGAACTCGTGAGTTCAATTGAAGAGTCAAGGATAGCTTTGATCATTTTCTCTAAAAACTATGCTAATTCAACATGGTGTTTAGATGAATTGACAAAGATCATGGAGTGCAAGAATGTGAAAGGACAAATTGTTGTTCCGGTGTTCTATGATGTAGATCCATCAACAGTGAGGAAACAAAAATCCATATTTGGAGAAGCATTTAGCAAACATGAAGCCCGGTTCCAGGAGGACAAGGTGCAAAAATGGAGGGCAGCACTGGAGGAAGCAGCTAATATTTCTGGCTGGGATTTGCCAAATACTGCCAATGGACATGAAGCTAGAGTCATGGAGAAAATTGCAGAAGATATAATGGCTAGATTGGGTAGTCAGAGACATGCAAGCAATGCTAGAAATCTTGTTGGAATGGAGTCACACATGCACAAGGTATATAAAATGCTTGGAATCGGGTCTGGTGGAGTTCACTTCCTTGGAATATTGGGAATGAGCGGAGTGGGGAAGACAACTCTAGCGAGAGTTATTTATGATAACATTCGGAGTCAATTTCAAGGTGCATGTTTTCTTCACGAAGTCAGAGACCGTTCAGCAAAACAGGGACTAGAGCGCTTGCAAGAGATACTTCTTTCTGAGATCCTTGTTGTAAAAAAACTAAGGATCAACGATTCATTTGAAGGAGCTAATATGCAAAAACAAAGACTACAGTACAAAAAGGTTCTTCTTGTTCTGGATGATGTTGATCACATAGATCAGTTAAATGCATTAGCCGGGGAGCGTGAATGGTTTGGTGACGGAAGTAGAATCATCATAACAACCAAAGATAAACACTTGCTTGTTAAGTATGAGACTGAAAAGATATACAGAATGAAAACTTTAAACAATTATGAAAGTTTACAACTTTTTAAACAACATGCTTTCAAGAAAAACCGCCCTACCAAAGAATTCGAGGATCTATCAGCTCAAGTGATAAAGCATACCGATGGACTCCCCCTAGCTCTGAAAGTCCTGGGAAGTTTCTTGTATGGAAGAGGTTTGGATGAATGGATAAGTGAAGTGGAGCGTTTGAAACAAATCCCAGAAAATGAAATTTTGAAGAAACTCGAACAAAGTTTCACTGGTCTCCACAATACTGAGCAAAAGATATTCTTAGACATTGCATGTTTCTTTTCAGGGAAGAAGAAAGATTCAGTGACCAGAATACTTGAGAGTTTTCATTTTTGCCCTGTCATTGGGATAAAAGTTCTCATGGAGAAATGTTTGATCACTATATTACAAGGTCGCATTACAATACACCAATTGATCCAAGATATGGGCTGGCACATTGTTCGTCGAGAAGCTACTGACGATCCAAGAATGTGTAGTAGGATGTGGAAGCGCGAAGATATTTGTCCTGTACTTGAAAGAAATTTGGGCACTGACAAGAACGAAGGCATGTCGCTGCACCTGACTAATGAAGAAGAAGTTAATTTTGGTGGCAAGGCCTTCATGCAGATGACCAGACTAAGGTTTCTCAAATTCCGGAATGCATATGTTTGCCAGGGACCTGAATTTCTTCCAGATGAGTTGAGGTGGCTTGATTGGCATGGATATCCTTCAAAAAGTCTGCCAAATAGTTTTAAGGGAGACCAACTTGTTGGTTTGAAATTGAAAAAAAGCCGCATCATACAACTTTGGAAAACCTCAAAGGATCTAGGAAAACTGAAGTACATGAACCTTAGCCATTCACAGAAGCTAATAAGGACGCCAGATTTTTCAGTTACGCCTAACCTTGAAAGACTGGTTCTTGAAGAATGCACTAGTTTGGTAGAAATCAATTTTTCTATTGAAAATCTTGGAAAGCTAGTCTTGCTGAATCTGAAGAACTGCAGAAATTTAAAGACCCTACCGAAGAGAATTCGATTGGAAAAGCTTGAAATTCTCGTTCTTACAGGCTGCTCAAAGTTAAGAACATTCCCAGAAATAGAAGAGAAAATGAATTGTTTAGCAGAACTGTATTTGGGTGCGACTTCTTTGAGTGAACTACCTGCATCAGTTGAGAACCTTTCAGGAGTTGGTGTAATAAATCTAAGTTACTGCAAGCATCTTGAGAGTCTACCTAGCAGTATTTTTAGGTTGAAATGTTTGAAAACACTTGATGTGTCCGGATGCTCAAAACTTAAAAATTTACCAGATGATTTGGGACTTTTGGTTGGTTTAGAGGAGCTCCACTGCACTCACACAGCCATCCAAACAATTCCTTCTTCTATGTCTCTTCTTAAAAACCTTAAGCACTTATCTCTCAGTGGATGTAATGCTTTGAGTTCACAAGTAAGCAGCTCAAGTCATGGCCAGAAGTCTATGGGTGTAAATTTTCAGAATTTGTCAGGTCTTTGTTCATTGATCATGTTGGATCTTAGTGACTGCAACATTTCAGATGGAGGCATTTTAAATAATCTTGGGTTCTTATCGTCTTTGGAGATACTGATTCTCAATGGTAACAATTTTTCCAATATTCCGGCTGCAAGCATAAGTCGTTTCACTCGACTTAAACGCCTTAAATTGCATGGTTGTGGGAGGCTTGAGAGTTTACCGGAACTTCCTCCGAGTATAAAAGGGATATTTGCTAATGAATGCACATCTTTGATGAGTATTGATCAACTAACCAAATATCCAATGTTGAGTGATGCTACATTCAGAAACTGTCGTCAACTCGTAAAAAATAAACAGCACACCTCCATGGTTGATTCATTGTTGAAGCAGATGCTCGAGGCACTATATATGAATGTCAGATTTTGCTTGTACGTCCCTGGTATGGAGATTCCCGAGTGGTTTACATACAAGAGCTGGGGGACTCAATCAATGTCAGTGGCCCTCCCCACAAATTGGTTCACACCCACATTCAGGGGGTTTACTGTTTGTGTTATTTTAGACAAGAAGATGCTTTTCATTTTAGGTCGCTTCAATACTCATAAAGTCTATGGCCTAGAAAATATGATATGGTTAAATCTCAAAAGATATGACGGTTTGCGGCAAAAAATTAGCACATCTTTCGGCCCAATAGGAAGTGAAAAACCTGGTGGTTTAGGTGATACTTTAATAACCCATATAGCATTTGAAAGATCTTGGAAGTTGGAGAATGATCTCGATTACTATCGTAATAACGCCTTTCAGCTTGAATTTAGTGCCTGTGATCATTATCAAAAGGATGTGGTAAAAGGTTTGGGAGTGCGTCTTGTGTATGAGAATTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| nematode resistance protein | nematode resistance protein [Solanum tuberosum]. | MNQESSLLPSPDIIRWSYDVFLSFRGEDVRKTFVDHLYLALEQKCINTFKDDEKLEKGKFISPELVSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKWRAALEEAANISGWDLPNTANGHEARVMEKIAEDIMARLGSQRHASNARNLVGMESHMHKVYKMLGIGSGGVHFLGILGMSGVGKTTLARVIYDNIRSQFQGACFLHEVRDRSAKQGLERLQEILLSEILVVKKLRINDSFEGANMQKQRLQYKKVLLVLDDVDHIDQLNALAGEREWFGDGSRIIITTKDKHLLVKYETEKIYRMKTLNNYESLQLFKQHAFKKNRPTKEFEDLSAQVIKHTDGLPLALKVLGSFLYGRGLDEWISEVERLKQIPENEILKKLEQSFTGLHNTEQKIFLDIACFFSGKKKDSVTRILESFHFCPVIGIKVLMEKCLITILQGRITIHQLIQDMGWHIVRREATDDPRMCSRMWKREDICPVLERNLGTDKNEGMSLHLTNEEEVNFGGKAFMQMTRLRFLKFRNAYVCQGPEFLPDELRWLDWHGYPSKSLPNSFKGDQLVGLKLKKSRIIQLWKTSKDLGKLKYMNLSHSQKLIRTPDFSVTPNLERLVLEECTSLVEINFSIENLGKLVLLNLKNCRNLKTLPKRIRLEKLEILVLTGCSKLRTFPEIEEKMNCLAELYLGATSLSELPASVENLSGVGVINLSYCKHLESLPSSIFRLKCLKTLDVSGCSKLKNLPDDLGLLVGLEELHCTHTAIQTIPSSMSLLKNLKHLSLSGCNALSSQVSSSSHGQKSMGVNFQNLSGLCSLIMLDLSDCNISDGGILNNLGFLSSLEILILNGNNFSNIPAASISRFTRLKRLKLHGCGRLESLPELPPSIKGIFANECTSLMSIDQLTKYPMLSDATFRNCRQLVKNKQHTSMVDSLLKQMLEALYMNVRFCLYVPGMEIPEWFTYKSWGTQSMSVALPTNWFTPTFRGFTVCVILDKKMLFILGRFNTHKVYGLENMIWLNLKRYDGLRQKISTSFGPIGSEKPGGLGDTLITHIAFERSWKLENDLDYYRNNAFQLEFSACDHYQKDVVKGLGVRLVYEN |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
6-158 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
SLLPSPDIIRWSYDVFLSFRGEDVRKTFVDHLYLALEQKCINTFKDDEKLEKGKFISPELVSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKWRAALEEAANISGW |
| Gene3D: G3DSA:3.40.50.10140 | 16-150 | G3DSA:3.40.50.10140 | WSYDVFLSFRGEDVRKTFVDHLYLALEQKCINTFKDDEKLEKGKFISPELVSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKWRAALE |
| ProfileScan: PS50104 IPR000157
|
16-155 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
WSYDVFLSFRGEDVRKTFVDHLYLALEQKCINTFKDDEKLEKGKFISPELVSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKWRAALEEAANI |
| HMMSmart: SM00255 IPR000157
|
17-155 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
SYDVFLSFRGEDVRKTFVDHLYLALEQKCINTFKDDEKLEKGKFISPELVSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKWRAALEEAANI |
| HMMPfam: PF01582 IPR000157
|
20-150 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRGEDVRKTFVDHLYLALEQKCINTFKDDEKLEKGKFISPELVSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKWRAALE |
| HMMPanther: PTHR11017 | 44-1009 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | KCINTFKDDEKLEKGKFISPELVSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKWRAALEEAANISGWDLPNTANGHEARVMEKIAEDIMARLGSQRHASNARNLVGMESHMHKVYKMLGIGSGGVHFLGILGMSGVGKTTLARVIYDNIRSQFQGACFLHEVRDRSAKQGLERLQEILLSEILVVKKLRINDSFEGANMQKQRLQYKKVLLVLDDVDHIDQLNALAGEREWFGDGSRIIITTKDKHLLVKYETEKIYRMKTLNNYESLQLFKQHAFKKNRPTKEFEDLSAQVIKHTDGLPLALKVLGSFLYGRGLDEWISEVERLKQIPENEILKKLEQSFTGLHNTEQKIFLDIACFFSGKKKDSVTRILESFHFCPVIGIKVLMEKCLITILQGRITIHQLIQDMGWHIVRREATDDPRMCSRMWKREDICPVLERNLGTDKNEGMSLHLTNEEEVNFGGKAFMQMTRLRFLKFRNAYVCQGPEFLPDELRWLDWHGYPSKSLPNSFKGDQLVGLKLKKSRIIQLWKTSKDLGKLKYMNLSHSQKLIRTPDFSVTPNLERLVLEECTSLVEINFSIENLGKLVLLNLKNCRNLKTLPKRIRLEKLEILVLTGCSKLRTFPEIEEKMNCLAELYLGATSLSELPASVENLSGVGVINLSYCKHLESLPSSIFRLKCLKTLDVSGCSKLKNLPDDLGLLVGLEELHCTHTAIQTIPSSMSLLKNLKHLSLSGCNALSSQVSSSSHGQKSMGVNFQNLSGLCSLIMLDLSDCNISDGGILNNLGFLSSLEILILNGNNFSNIPAASISRFTRLKRLKLHGCGRLESLPELPPSIKGIFANECTSLMSIDQLTKYPMLSDATFRNCRQLVKNKQHTSMVDSLLKQMLEALYMNVRFCLYVPGMEIPEWFTYKSWGTQSMS |
| HMMPanther: PTHR11017:SF20 | 44-1009 | PTHR11017:SF20,SUBFAMILY NOT NAMED | KCINTFKDDEKLEKGKFISPELVSSIEESRIALIIFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQEDKVQKWRAALEEAANISGWDLPNTANGHEARVMEKIAEDIMARLGSQRHASNARNLVGMESHMHKVYKMLGIGSGGVHFLGILGMSGVGKTTLARVIYDNIRSQFQGACFLHEVRDRSAKQGLERLQEILLSEILVVKKLRINDSFEGANMQKQRLQYKKVLLVLDDVDHIDQLNALAGEREWFGDGSRIIITTKDKHLLVKYETEKIYRMKTLNNYESLQLFKQHAFKKNRPTKEFEDLSAQVIKHTDGLPLALKVLGSFLYGRGLDEWISEVERLKQIPENEILKKLEQSFTGLHNTEQKIFLDIACFFSGKKKDSVTRILESFHFCPVIGIKVLMEKCLITILQGRITIHQLIQDMGWHIVRREATDDPRMCSRMWKREDICPVLERNLGTDKNEGMSLHLTNEEEVNFGGKAFMQMTRLRFLKFRNAYVCQGPEFLPDELRWLDWHGYPSKSLPNSFKGDQLVGLKLKKSRIIQLWKTSKDLGKLKYMNLSHSQKLIRTPDFSVTPNLERLVLEECTSLVEINFSIENLGKLVLLNLKNCRNLKTLPKRIRLEKLEILVLTGCSKLRTFPEIEEKMNCLAELYLGATSLSELPASVENLSGVGVINLSYCKHLESLPSSIFRLKCLKTLDVSGCSKLKNLPDDLGLLVGLEELHCTHTAIQTIPSSMSLLKNLKHLSLSGCNALSSQVSSSSHGQKSMGVNFQNLSGLCSLIMLDLSDCNISDGGILNNLGFLSSLEILILNGNNFSNIPAASISRFTRLKRLKLHGCGRLESLPELPPSIKGIFANECTSLMSIDQLTKYPMLSDATFRNCRQLVKNKQHTSMVDSLLKQMLEALYMNVRFCLYVPGMEIPEWFTYKSWGTQSMS |
| superfamily: SSF52540 | 178-424 | SSF52540 | DIMARLGSQRHASNARNLVGMESHMHKVYKMLGIGSGGVHFLGILGMSGVGKTTLARVIYDNIRSQFQGACFLHEVRDRSAKQGLERLQEILLSEILVVKKLRINDSFEGANMQKQRLQYKKVLLVLDDVDHIDQLNALAGEREWFGDGSRIIITTKDKHLLVKYETEKIYRMKTLNNYESLQLFKQHAFKKNRPTKEFEDLSAQVIKHTDGLPLALKVLGSFLYGRGLDEWISEVERLKQIPENEI |
| Gene3D: G3DSA:3.40.50.300 | 187-342 | G3DSA:3.40.50.300 | RHASNARNLVGMESHMHKVYKMLGIGSGGVHFLGILGMSGVGKTTLARVIYDNIRSQFQGACFLHEVRDRSAKQGLERLQEILLSEILVVKKLRINDSFEGANMQKQRLQYKKVLLVLDDVDHIDQLNALAGEREWFGDGSRIIITTKDKHLLVKY |
| HMMPfam: PF00931 IPR002182
|
199-456 | NB-ARC,NBS NB-ARC
|
ESHMHKVYKMLGIGSGGVHFLGILGMSGVGKTTLARVIYDNIRSQFQGACFLHEVRDRSAKQGLERLQEILLSEILVVKKLRINDSFEGANMQKQRLQYKKVLLVLDDVDHIDQLNALAGEREWFGDGSRIIITTKDKHLLVKYETEKIYRMKTLNNYESLQLFKQHAFKKNRPTKEFEDLSAQVIKHTDGLPLALKVLGSFLYGRGLDEWISEVERLKQIPENEILKKLEQSFTGLHNTEQKIFLDIACFFSGKKKD |
| FPrintScan: PR00364 IPR000767
|
218-233 | DISEASERSIST Disease resistance protein
|
FLGILGMSGVGKTTLA |
| FPrintScan: PR00364 IPR000767
|
294-308 | DISEASERSIST Disease resistance protein
|
RLQYKKVLLVLDDVD |
| FPrintScan: PR00364 IPR000767
|
387-401 | DISEASERSIST Disease resistance protein
|
TDGLPLALKVLGSFL |
| superfamily: SSF46785 | 422-528 | SSF46785 | NEILKKLEQSFTGLHNTEQKIFLDIACFFSGKKKDSVTRILESFHFCPVIGIKVLMEKCLITILQGRITIHQLIQDMGWHIVRREATDDPRMCSRMWKREDICPVLE |
| superfamily: SSF52058 | 490-962 | SSF52058,LRR | TIHQLIQDMGWHIVRREATDDPRMCSRMWKREDICPVLERNLGTDKNEGMSLHLTNEEEVNFGGKAFMQMTRLRFLKFRNAYVCQGPEFLPDELRWLDWHGYPSKSLPNSFKGDQLVGLKLKKSRIIQLWKTSKDLGKLKYMNLSHSQKLIRTPDFSVTPNLERLVLEECTSLVEINFSIENLGKLVLLNLKNCRNLKTLPKRIRLEKLEILVLTGCSKLRTFPEIEEKMNCLAELYLGATSLSELPASVENLSGVGVINLSYCKHLESLPSSIFRLKCLKTLDVSGCSKLKNLPDDLGLLVGLEELHCTHTAIQTIPSSMSLLKNLKHLSLSGCNALSSQVSSSSHGQKSMGVNFQNLSGLCSLIMLDLSDCNISDGGILNNLGFLSSLEILILNGNNFSNIPAASISRFTRLKRLKLHGCGRLESLPELPPSIKGIFANECTSLMSIDQLTKYPMLSDATFRNCRQLVKNK |
| Gene3D: G3DSA:3.80.10.10 | 541-846 | G3DSA:3.80.10.10 | LHLTNEEEVNFGGKAFMQMTRLRFLKFRNAYVCQGPEFLPDELRWLDWHGYPSKSLPNSFKGDQLVGLKLKKSRIIQLWKTSKDLGKLKYMNLSHSQKLIRTPDFSVTPNLERLVLEECTSLVEINFSIENLGKLVLLNLKNCRNLKTLPKRIRLEKLEILVLTGCSKLRTFPEIEEKMNCLAELYLGATSLSELPASVENLSGVGVINLSYCKHLESLPSSIFRLKCLKTLDVSGCSKLKNLPDDLGLLVGLEELHCTHTAIQTIPSSMSLLKNLKHLSLSGCNALSSQVSSSSHGQKSMGVNFQ |
| FPrintScan: PR00364 IPR000767
|
764-780 | DISEASERSIST Disease resistance protein
|
FRLKCLKTLDVSGCSKL |
| HMMPfam: PF00560 IPR001611
|
769-788 | LRR_1 Leucine-rich repeat
|
LKTLDVSGCSKLKNLPDDLG |
| Gene3D: G3DSA:3.80.10.10 | 847-921 | G3DSA:3.80.10.10 | NLSGLCSLIMLDLSDCNISDGGILNNLGFLSSLEILILNGNNFSNIPAASISRFTRLKRLKLHGCGRLESLPELP |
| HMMPfam: PF00560 IPR001611
|
878-897 | LRR_1 Leucine-rich repeat
|
SLEILILNGNNFSNIPAASI |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Late Blight Potato | Phytophthora infestans |
List of References
Jürgen Paal, Heike Henselewski, Jost Muth, Khalid Meksem, Cristina M Menéndez, Francesco Salamini, Agim Ballvora, Christiane Gebhardt
Molecular cloning of the potato Gro1-4 gene conferring resistance to pathotype Ro1 of the root cyst nematode Globodera rostochiensis, based on a candidate gene approach.
Plant J.: 2004, 38(2);285-97
PubMed:15078331
WorldCat.org
DOI
(P p)
List of Contributions
There has not been any contribution yet.
