PRGDB00000043 (Pto)

Pto
Gene Type	Reference_R-Genes,_manually_curated
GenBank	430991 (U02271)
Gene Class	Kinase
Domain Type	Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Chromosome	5
Gene Species	Solanum pimpinellifolium
	Comment?

Lycopersicon pimpinellifolium Rio Grande-PtoR protein kinase mRNA, complete cds.

DNA Sequence

ATGGGAAGCAAGTATTCTAAGGCAACAAATTCCATAAATGATGCTTTAAGCTCGAGTTATCTCGTTCCTTTTGAAAGTTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACTAATAATTTTGATCACAAGTTTTTAATTGGACATGGTGTCTTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAGCAAAGGTGGCCCTGAAAAGGCGTACACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGACTCTCTCATTTTGCAGACATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATAAATACATGGAGAATGGGAACCTCAAGAGACATTTGTATGGATCAGATCTACCCACAATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAGAGCAATTATACATCGTGATGTCAAGTCTATAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCCAAGAAAGGGACTGAGCTTGATCAAACCCATCTTAGCACAGTAGTGAAAGGAACTCTCGGCTACATTGACCCTGAATATTTTATAAAGGGACGACTCACTGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGTCTGCCATAGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGATACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCACTTCGTCTCCAAGAGTCTGTTATTTAA

Protein sequences

Name	Description	Sequence
protein kinase	protein kinase [Lycopersicon pimpinellifolium].	MGSKYSKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQESVI

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF56112 IPR011009	13-319	Kinase_like Protein kinase-like domain	NDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQES
HMMPanther: PTHR24420	25-318	PTHR24420,FAMILY NOT NAMED	ESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQE
HMMPanther: PTHR24420:SF785	25-318	PTHR24420:SF785	ESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQE
Gene3D: G3DSA:3.30.200.20	30-117	G3DSA:3.30.200.20	PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYM
ProfileScan: PS50011 IPR000719	41-313	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	FDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA
HMMPfam: PF07714 IPR001245	46-307	Pkinase_Tyr Serine-threonine/tyrosine-protein kinase catalytic	LIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL
PatternScan: PS00107 IPR017441	47-69	PROTEIN_KINASE_ATP Protein kinase, ATP binding site	IGHGVFGKVYKGVLRDGAKVALK
Gene3D: G3DSA:1.10.510.10	119-309	G3DSA:1.10.510.10	NGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWK
PatternScan: PS00108 IPR008271	160-172	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	IIHRDVKSINILL

Diseases

Disease	Pathogen	Avirulence gene
Bacterial Speck	Pseudomonas syringae

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Analyses

Blast

Blast matches against Reference R-Genes. Show