PRGDB00000044 (N)
| N | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 558886 (U15605) |
| Gene Class | TNL |
| Domain Type | LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, NBS, TIR, Others |
| Gene Species | Nicotiana glutinosa |
DNA Sequence
ATGGCATCTTCTTCTTCTTCTTCTAGATGGAGCTATGATGTTTTCTTAAGTTTTAGAGGCGAAGATACTCGAAAAACGTTTACAAGTCACTTATACGAAGTCTTGAATGATAAGGGAATAAAAACCTTTCAAGATGATAAAAGGCTAGAGTACGGCGCAACCATCCCAGGTGAACTCTGTAAAGCTATAGAAGAGTCTCAATTTGCCATTGTTGTTTTCTCAGAGAATTATGCAACATCAAGGTGGTGTTTGAATGAACTAGTGAAGATCATGGAATGCAAAACTCGATTTAAGCAAACTGTTATACCGATATTCTATGATGTGGATCCATCACATGTTCGGAACCAAAAGGAGAGCTTTGCAAAAGCCTTTGAAGAACATGAAACAAAGTATAAGGATGATGTTGAGGGAATACAAAGATGGAGGATTGCTTTAAATGAAGCGGCCAATCTCAAAGGCTCCTGTGATAATCGTGACAAGACTGATGCAGACTGTATTCGACAGATTGTTGACCAAATCTCATCCAAATTATGCAAGATTTCTTTATCTTATTTGCAAAACATTGTTGGAATAGATACTCATTTAGAGAAAATAGAATCCTTACTAGAGATAGGAATCAATGGTGTTCGGATTATGGGGATCTGGGGAATGGGGGGAGTCGGTAAAACAACAATAGCAAGAGCTATATTTGATACTCTTTTAGGAAGAATGGATAGTTCCTATCAATTTGATGGTGCTTGTTTCCTTAAGGATATTAAAGAAAACAAACGTGGAATGCATTCTTTGCAAAATGCCCTTCTCTCTGAACTTTTAAGGGAAAAAGCTAATTACAATAATGAGGAGGATGGAAAGCACCAAATGGCTAGTAGACTTCGTTCGAAGAAGGTCCTAATTGTGCTTGATGATATAGATAATAAAGATCATTATTTGGAGTATTTAGCAGGTGATCTTGATTGGTTTGGTAATGGTAGTAGAATTATTATAACAACTAGAGACAAGCATTTGATAGAGAAGAATGATATAATATATGAGGTGACTGCACTACCCGATCATGAATCCATTCAATTGTTCAAACAACATGCTTTCGGAAAAGAAGTTCCAAATGAGAATTTTGAGAAGCTTTCATTAGAGGTAGTAAATTATGCTAAAGGCCTTCCTTTAGCCCTCAAAGTGTGGGGTTCTTTGCTGCATAACCTACGATTAACTGAATGGAAAAGTGCTATAGAGCACATGAAAAATAACTCTTATTCTGGAATTATTGATAAGCTCAAAATAAGTTATGATGGATTAGAGCCCAAACAACAAGAGATGTTTTTAGATATAGCATGCTTCTTGCGAGGGGAAGAAAAAGATTACATCCTACAAATCCTTGAGAGTTGTCATATTGGAGCTGAATACGGGTTACGTATTTTAATTGACAAATCTCTTGTGTTCATCTCTGAATATAATCAGGTTCAAATGCATGACTTAATACAGGATATGGGTAAATATATAGTGAATTTTCAAAAAGATCCCGGAGAACGTAGCAGATTATGGCTCGCCAAGGAAGTCGAAGAAGTGATGAGCAACAACACAGGGACCATGGCAATGGAAGCAATTTGGGTTTCTTCTTATTCTAGTACTCTACGCTTTAGCAATCAGGCCGTGAAAAATATGAAAAGGCTTAGGGTATTTAACATGGGGAGGTCGTCGACACATTATGCCATCGATTATCTGCCCAACAACTTGCGTTGTTTTGTTTGCACTAACTATCCTTGGGAGTCATTTCCATCTACATTTGAACTCAAAATGCTTGTTCACCTCCAACTCCGACACAATTCTCTGCGTCATTTATGGACAGAAACAAAGCATTTGCCGTCTCTACGGAGGATAGATCTCAGCTGGTCTAAAAGATTGACGCGAACACCAGATTTCACGGGGATGCCAAATTTGGAGTATGTGAATTTGTATCAATGTAGTAATCTTGAAGAAGTTCACCATTCCCTGGGATGTTGCAGCAAAGTCATTGGTTTATATTTGAATGATTGTAAAAGCCTTAAGAGGTTTCCATGTGTTAACGTGGAATCTCTTGAATATCTGGGTCTAAGAAGTTGCGATAGTTTAGAGAAATTGCCAGAAATCTACGGGAGAATGAAGCCGGAGATACAGATTCACATGCAAGGCTCTGGGATAAGGGAACTACCATCATCTATTTTTCAGTACAAAACTCATGTTACCAAGCTATTGTTGTGGAATATGAAAAACCTTGTAGCTCTTCCAAGCAGCATATGTAGGTTGAAAAGTTTGGTTAGTCTGAGTGTGTCGGGTTGCTCAAAACTTGAAAGCTTGCCAGAAGAGATAGGGGATTTAGACAACTTACGGGTGTTTGATGCCAGTGATACTCTAATTTTACGACCTCCGTCTTCCATCATACGCTTGAACAAACTTATAATCTTGATGTTTCGAGGCTTCAAAGATGGAGTGCACTTTGAGTTCCCTCCTGTGGCTGAAGGATTACACTCATTGGAATATCTGAATCTCAGTTACTGCAATCTAATAGATGGAGGACTTCCGGAAGAGATTGGATCCTTATCCTCTTTGAAAAAGTTGGATCTCAGTAGAAATAATTTTGAGCATTTGCCTTCAAGTATAGCCCAACTTGGTGCTCTTCAATCCTTAGACTTAAAAGATTGCCAGAGGCTTACACAGCTACCAGAACTTCCCCCAGAATTAAATGAATTGCATGTAGATTGTCATATGGCTCTGAAATTTATCCATTATTTAGTAACAAAGAGAAAGAAACTACATAGAGTGAAACTTGATGATGCACACAATGATACTATGTACAATTTGTTTGCATATACCATGTTTCAGAATATCTCTTCCATGAGGCATGACATCTCTGCTTCAGATTCCTTGTCACTAACAGTATTTACCGGTCAACCGTATCCTGAAAAGATCCCGAGTTGGTTCCACCATCAGGGTTGGGATAGTAGTGTATCAGTCAATTTGCCTGAAAATTGGTATATACCTGATAAATTCTTGGGATTTGCTGTATGTTACTCTCGTAGCTTAATTGACACAACAGCTCACTTGATTCCCGTATGTGATGACAAGATGTCGCGCATGACCCAGAAACTTGCCTTATCAGAATGTGATACAGAATCATCCAACTATTCAGAATGGGATATACATTTTTTCTTTGTACCTTTTGCTGGCTTATGGGATACATCTAAGGCAAATGGAAAAACACCAAATGATTATGGGATTATTAGGCTATCTTTTTCTGGAGAAGAGAAGATGTATGGACTTCGTTTGTTGTATAAAGAAGGACCAGAGGTTAATGCCTTGTTACAAATGAGGGAAAATAGCAATGAACCAACAGAACATTCCACTGGGATAAGGAGGACTCAATATAACAACAGAACTTCCTTTTATGAGCTCATCAATGGGTGA
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
1-154 | Toll/Interleukin receptor TIR domain Toll/interleukin-1 receptor homology (TIR) domain
|
MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGS |
| Seg: seg | 3-8 | seg | SSSSSS |
| Gene3D: G3DSA:3.40.50.10140 | 7-145 | no description | SSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIAL |
| ProfileScan: PS50104 IPR000157
|
10-151 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
WSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANL |
| HMMSmart: SM00255 IPR000157
|
11-151 | Toll Toll/interleukin-1 receptor homology (TIR) domain
|
SYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANL |
| HMMPfam: PF01582 IPR000157
|
14-146 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALN |
| HMMPanther: PTHR11017 | 37-922 | FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | DKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKLCKISLSYLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIEKNDIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQKDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVSSYSSTLRFSNQAVKNMKRLRVFNMGRSSTHYAIDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFIHYLV |
| HMMPanther: PTHR11017:SF20 | 37-922 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | DKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKLCKISLSYLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIEKNDIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQKDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVSSYSSTLRFSNQAVKNMKRLRVFNMGRSSTHYAIDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFIHYLV |
| superfamily: SSF52540 | 181-419 | P-loop containing nucleoside triphosphate hydrolases | SLSYLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIEKNDIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGI |
| Gene3D: G3DSA:3.40.50.300 | 184-336 | no description | YLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLI |
| HMMPfam: PF00931 IPR002182
|
192-449 | NB-ARC,NBS NB-ARC
|
DTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIEKNDIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEE |
| FPrintScan: PR00364 IPR000767
|
211-226 | DISEASERSIST Disease resistance protein
|
IMGIWGMGGVGKTTIA |
| FPrintScan: PR00364 IPR000767
|
290-304 | DISEASERSIST Disease resistance protein
|
RLRSKKVLIVLDDID |
| FPrintScan: PR00364 IPR000767
|
382-396 | DISEASERSIST Disease resistance protein
|
AKGLPLALKVWGSLL |
| superfamily: SSF52058 | 486-939 | L domain-like,LRR | QMHDLIQDMGKYIVNFQKDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVSSYSSTLRFSNQAVKNMKRLRVFNMGRSSTHYAIDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFIHYLVTKRKKLHRVKLDDAHND |
| Gene3D: G3DSA:3.80.10.10 | 563-807 | no description | SSTHYAIDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLN |
| HMMSmart: SM00369 IPR003591
|
595-617 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LKMLVHLQLRHNSLRHLWTETKH |
| ProfileScan: PS51450 IPR001611
|
597-618 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
MLVHLQLRHNSLRHLWTETKHL |
| HMMSmart: SM00369 IPR003591
|
759-783 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LKSLVSLSVSGCSKLESLPEEIGDL |
| Gene3D: G3DSA:3.80.10.10 | 808-908 | no description | KLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELH |
| HMMSmart: SM00369 IPR003591
|
832-856 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LHSLEYLNLSYCNLIDGGLPEEIGS |
| ProfileScan: PS51450 IPR001611
|
834-854 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLEYLNLSYCNLIDGGLPEEI |
| HMMPfam: PF12799 | 834-874 | LRR_4,Leucine Rich repeats (2 copies) | SLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLP |
| Seg: seg | 856-866 | seg | SLSSLKKLDLS |
| HMMSmart: SM00369 IPR003591
|
857-880 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSSLKKLDLSRNNFEHLPSSIAQL |
| ProfileScan: PS51450 IPR001611
|
859-880 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLKKLDLSRNNFEHLPSSIAQL |
| FPrintScan: PR00364 IPR000767
|
878-894 | DISEASERSIST Disease resistance protein
|
AQLGALQSLDLKDCQRL |
| ProfileScan: PS51450 IPR001611
|
882-904 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
ALQSLDLKDCQRLTQLPELPPEL |
| HMMPfam: PF13504 | 882-898 | LRR_7,Leucine rich repeat | ALQSLDLKDCQRLTQLP |
| Seg: seg | 897-907 | seg | LPELPPELNEL |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Tobacco Mosaic Virus | Tobacco mosaic virus |
List of Contributions
There has not been any contribution yet.
