PRGDB00000047 (R3a)
| R3a | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 57233496 (AY849382) |
| Gene Class | NL |
| Domain Type | LRR, NBS, LRR, LRR, Others |
| Chromosome | 11 |
| Gene Species | Solanum tuberosum |
DNA Sequence
ATGGAGATTGGCTTAGCAGTTGGTGGTGCATTTCTCTCTTCAGCTTTGAATGTTCTCTTTGATAGGCTTGCTCCTCACGGTGATCTGCTCAACATGTTTCAGAAGCATAAGGATCATGTTAAGCTCTTAAAGAAGCTGGAGGACATTTTGCTCGGTCTTCAGATTGTGCTAAGTGATGCAGAGAATAAACAAGCATCAAATCGACATGTGAGCCAGTGGTTCAATAAGCTTCAGAATGCTGTGGACGGTGCTGAGAACTTGATAGAACAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGCCAGCATCAAAATCTTGCAGAAACAAGCAACCAGCAAGTAAGTGACCTTAACCTGTGCTTCAGTGATGATTTCTTTCTTAACATAAAGGATAAGTTGGAAGAAACCATTGAAACATTGGAGGTGTTGGAAAAGCAAATTGGTCGCCTTGGCTTAAAGGAACATTTTGGTTCGACTAAACAAGAAACTAGAACACCTTCAACTTCTTTAGTTGATGACTCTGATATCTTTGGAAGGCAGAATGATATAGAGGATTTGATTGACCGTTTATTATCTGAAGATGCAAGTGGAAAAAAGCGGACTGTAGTTCCTATTGTTGGAATGGGTGGTCTGGGTAAGACAACACTTGCTAAAGCGGTTTACAATGATGAGAGAGTGCAGATACATTTTGGTTTGAAAGCTTGGTTTTGTGTTTCTGAGGCATTTGATGCTTTCAGAATAACAAAAGGGTTACTTCAAGAAATTGGCTCATTTGACTTGAAGGCTGATGACAATCTTAATCAGCTACAAGTCAAATTGAAGGAAAGATTAAAGGGAAAGAAGTTTCTTATAGTTTTGGATGATGTGTGGAATGACAACTACAACAAGTGGGATGAATTGAGAAATGTTTTTGTACAAGGAGATATAGGAAGTAAGATCATTGTGACGACACGTAAAGAGAGTGTTGCCTTGATGATGGGAAATGAGCAAATTAGCATGGACAATTTGTCTACTGAATCCTCTTGGTCTTTATTTAAAACACATGCATTTGAAAACATGGGTCCTATGGGACATCCGGAACTTGAAGAGGTCGGGAAACAAATTGCAGCTAAGTGCAAAGGACTGCCCTTAGCTCTGAAGACGCTCGCTGGCATGTTACGCTCCAAATCAGAGGTTGAAGAGTGGAAACGTATTTTGAGAAGTGAAATATGGGAGCTGCCACACAATGACATATTACCAGCGTTGATGTTGAGCTACAATGATCTTCCCGCACATTTAAAGCGATGTTTTTCCTTTTGTGCAATATTTCCTAAAGATTATCCCTTTAGGAAAGAACAAGTTATTCATCTGTGGATTGCCAATGGTCTCGTACCACAGGAAGATGTAATAATTGAAGATTCAGGCAACCAATACTTTCTCGAGTTGAGGTCAAGATCATTATTCGAAAGGGTCCCAAATCCTTCTCAAGGGAACACAGAGAATTTATTCTTAATGCATGACCTTGTCAATGATTTAGCGCAAATTGCATCTTCAAAACTTTGTATCAGGTTGGAAGAGAGCCAAGGATCTCATATGTTGGAACAAAGTCAACACTTATCATATTCAATGGGATATGGTGGTGAGTTTGAGAAATTGACACCCCTCTACAAATTGGAGCAGCTGAGGACATTGCTTCCGACATGTATTGATCTCCCTGATTGTTGTCACCATCTAAGCAAGAGGGTGCTACATAACATACTGCCAAGACTAACATCCTTAAGGGCATTATCGTTGTCATGCTATGAGATTGTTGAGTTGCCAAATGACTTGTTTATCAAATTAAAGCTCCTCAGATTTTTGGATATTTCTCGGACAGAGATTAAAAGGTTGCCAGATTCCATTTGTGCATTGTATAACTTAGAGACACTTCTCCTGTCATCTTGTTATGATCTTGAGGAGCTACCGCTGCAGATGGAGAAGCTGATTAACTTGCGTCATCTTGACATAAGCAACACTCGTCTCTTGAAGATGCCGCTACATCTGAGCAAGTTGAAAAGCCTCCAAGTGTTAGTGGGAGCCAAATTTCTTATAGGTGGTTTGAGAATGGAAGATTTGGGTGAAGTACATAACTTGTACGGATCTCTATCAGTTGTAGAGTTGCAAAATGTGGTTGATAGAAGGGAAGCTGTGAAGGCAAAGATGAGGGAGAAGAATCACGTCGACAGGTTATATTTGGAGTGGAGTGGAAGTAGTAGTGCCGACAATTCACAAACAGAAAGAGACATACTTGATGAGCTACGCCCCCATAAAAACATAAAAGTAGTCAAAATCACTGGATATAGAGGGACAAACTTTCCCAATTGGCTAGCTGATCCTTTGTTTCTTAAGCTGGTAAAATTGTCTCTTAGAAACTGCAAGAACTGTTATTCATTGCCAGCACTAGGACAACTCCCTTTTCTGAAATTCCTTTCGATTAGAGAGATGCATGGAATAACAGAGGTGACGGAAGAATTCTATGGCAGTTGGTCCTCCAAAAAGCCTTTTAACTGTCTTGAGAAGCTTGAATTTAAAGATATGCCGGAGTGGAAGCAATGGGACCTACTAGGAAGTGGAGAGTTCCCTATACTTGAGAAGCTTTTGATTGAAAATTGCCCTGAACTCAGTTTGGAGACGGTACCCATCCAACTTTCAAGTTTAAAAAGTTTTGACGTAATTGGTTCTCCCTTGGTTATAAACTTTCCTTTAAGCATACTGCCCACTACCTTGAAGAGAATAAAGATATCTGATTGCCAGAAATTGAAATTGGAACAGCCAACTGGTGAGATTAGTATGTTTCTGGAGGAATTGACACTGATTAAATGTGATTGTATAGATGATATATCACCTGAGTTACTCCCAAGAGCACGCAAATTGTGGGTACAGGATTGGCACAACCTTACTAGGTTTTTGATTCCTACTGCCACTGAAACTCTCGATATTTGGAATTGTGAGAATGTTGAAATACTTTCGGTGGCATGTGGGGGGACCCAGATGACGTCACTGACTATTGCCTACTGTAAGAAGCTGAAGTGGCTGCCAGAACGTATGCAGGAACTCCTTCCATCTCTTAAGGAACTGCATCTGTCTAATTGTCCAGAAATAGAGTCCTTTCCTGAAGGTGGATTGCCCTTCAATTTACAACAACTTGCGATCAGATATTGCAAGAAACTGGTGAACGGCCGAAAGGAGTGGCATTTACAGAGACGACTCTGTCTCACAGCGTTAATCATCTACCATGATGGCAGTGACGAAGAGATTGTTGGTGGTGAGAATTGGGAGTTGCCTTCCTCTATTCAAAGGCTTACCATAGTGAATCTGAAAACATTAAGCAGCCAACATCTCAAAAACCTCACCTCTCTTCAATATCTATTTATTAGGGGTAATTTACCTCAGATTCAGCCAATGCTGGAACAAGGCCAGTGTTCGCACCTCACTTCGCTTCAAAGTCTACAAATCTCCTCCCTCCAATCACTTCCTGAATCGGCACTGCCCTCCTCCCTCTCTCACCTGGAGATCTCCCATTGCCCTAATCTCCAATCACTTCCTGAATCGGCACTGCCCTCCTCCCTCTCTCAGCTGACCATCAATAATTGCCCTAATCTCCAATCACTTTCCGAATCAACACTGCCCTCCTCCCTCTCTCAGCTGGAGATCTCCTTTTGCCCTAATCTCCAATATCTTCCACTAAAAGGGATGCCCTCTTCCCTCTCTGAACTATCTATTTACAAATGCCCATTGCTCAAACCACAACTAGAATTTGACAAGGGGGAATACTGGCCAAATATTGCTCAATTTCCCACCATAAAGATCGATAGGGAATGCATGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| potato late blight resistance protein R3a | potato late blight resistance protein R3a [Solanum tuberosum]. | MEIGLAVGGAFLSSALNVLFDRLAPHGDLLNMFQKHKDHVKLLKKLEDILLGLQIVLSDAENKQASNRHVSQWFNKLQNAVDGAENLIEQVNYEALRLKVEGQHQNLAETSNQQVSDLNLCFSDDFFLNIKDKLEETIETLEVLEKQIGRLGLKEHFGSTKQETRTPSTSLVDDSDIFGRQNDIEDLIDRLLSEDASGKKRTVVPIVGMGGLGKTTLAKAVYNDERVQIHFGLKAWFCVSEAFDAFRITKGLLQEIGSFDLKADDNLNQLQVKLKERLKGKKFLIVLDDVWNDNYNKWDELRNVFVQGDIGSKIIVTTRKESVALMMGNEQISMDNLSTESSWSLFKTHAFENMGPMGHPELEEVGKQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPQEDVIIEDSGNQYFLELRSRSLFERVPNPSQGNTENLFLMHDLVNDLAQIASSKLCIRLEESQGSHMLEQSQHLSYSMGYGGEFEKLTPLYKLEQLRTLLPTCIDLPDCCHHLSKRVLHNILPRLTSLRALSLSCYEIVELPNDLFIKLKLLRFLDISRTEIKRLPDSICALYNLETLLLSSCYDLEELPLQMEKLINLRHLDISNTRLLKMPLHLSKLKSLQVLVGAKFLIGGLRMEDLGEVHNLYGSLSVVELQNVVDRREAVKAKMREKNHVDRLYLEWSGSSSADNSQTERDILDELRPHKNIKVVKITGYRGTNFPNWLADPLFLKLVKLSLRNCKNCYSLPALGQLPFLKFLSIREMHGITEVTEEFYGSWSSKKPFNCLEKLEFKDMPEWKQWDLLGSGEFPILEKLLIENCPELSLETVPIQLSSLKSFDVIGSPLVINFPLSILPTTLKRIKISDCQKLKLEQPTGEISMFLEELTLIKCDCIDDISPELLPRARKLWVQDWHNLTRFLIPTATETLDIWNCENVEILSVACGGTQMTSLTIAYCKKLKWLPERMQELLPSLKELHLSNCPEIESFPEGGLPFNLQQLAIRYCKKLVNGRKEWHLQRRLCLTALIIYHDGSDEEIVGGENWELPSSIQRLTIVNLKTLSSQHLKNLTSLQYLFIRGNLPQIQPMLEQGQCSHLTSLQSLQISSLQSLPESALPSSLSHLEISHCPNLQSLPESALPSSLSQLTINNCPNLQSLSESTLPSSLSQLEISFCPNLQYLPLKGMPSSLSELSIYKCPLLKPQLEFDKGEYWPNIAQFPTIKIDRECM |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF236 | 11-895 | PTHR23155:SF236,DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) | FLSSALNVLFDRLAPHGDLLNMFQKHKDHVKLLKKLEDILLGLQIVLSDAENKQASNRHVSQWFNKLQNAVDGAENLIEQVNYEALRLKVEGQHQNLAETSNQQVSDLNLCFSDDFFLNIKDKLEETIETLEVLEKQIGRLGLKEHFGSTKQETRTPSTSLVDDSDIFGRQNDIEDLIDRLLSEDASGKKRTVVPIVGMGGLGKTTLAKAVYNDERVQIHFGLKAWFCVSEAFDAFRITKGLLQEIGSFDLKADDNLNQLQVKLKERLKGKKFLIVLDDVWNDNYNKWDELRNVFVQGDIGSKIIVTTRKESVALMMGNEQISMDNLSTESSWSLFKTHAFENMGPMGHPELEEVGKQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPQEDVIIEDSGNQYFLELRSRSLFERVPNPSQGNTENLFLMHDLVNDLAQIASSKLCIRLEESQGSHMLEQSQHLSYSMGYGGEFEKLTPLYKLEQLRTLLPTCIDLPDCCHHLSKRVLHNILPRLTSLRALSLSCYEIVELPNDLFIKLKLLRFLDISRTEIKRLPDSICALYNLETLLLSSCYDLEELPLQMEKLINLRHLDISNTRLLKMPLHLSKLKSLQVLVGAKFLIGGLRMEDLGEVHNLYGSLSVVELQNVVDRREAVKAKMREKNHVDRLYLEWSGSSSADNSQTERDILDELRPHKNIKVVKITGYRGTNFPNWLADPLFLKLVKLSLRNCKNCYSLPALGQLPFLKFLSIREMHGITEVTEEFYGSWSSKKPFNCLEKLEFKDMPEWKQWDLLGSGEFPILEKLLIENCPELSLETVPIQLSSLKS |
| HMMPanther: PTHR23155 | 11-895 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FLSSALNVLFDRLAPHGDLLNMFQKHKDHVKLLKKLEDILLGLQIVLSDAENKQASNRHVSQWFNKLQNAVDGAENLIEQVNYEALRLKVEGQHQNLAETSNQQVSDLNLCFSDDFFLNIKDKLEETIETLEVLEKQIGRLGLKEHFGSTKQETRTPSTSLVDDSDIFGRQNDIEDLIDRLLSEDASGKKRTVVPIVGMGGLGKTTLAKAVYNDERVQIHFGLKAWFCVSEAFDAFRITKGLLQEIGSFDLKADDNLNQLQVKLKERLKGKKFLIVLDDVWNDNYNKWDELRNVFVQGDIGSKIIVTTRKESVALMMGNEQISMDNLSTESSWSLFKTHAFENMGPMGHPELEEVGKQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPQEDVIIEDSGNQYFLELRSRSLFERVPNPSQGNTENLFLMHDLVNDLAQIASSKLCIRLEESQGSHMLEQSQHLSYSMGYGGEFEKLTPLYKLEQLRTLLPTCIDLPDCCHHLSKRVLHNILPRLTSLRALSLSCYEIVELPNDLFIKLKLLRFLDISRTEIKRLPDSICALYNLETLLLSSCYDLEELPLQMEKLINLRHLDISNTRLLKMPLHLSKLKSLQVLVGAKFLIGGLRMEDLGEVHNLYGSLSVVELQNVVDRREAVKAKMREKNHVDRLYLEWSGSSSADNSQTERDILDELRPHKNIKVVKITGYRGTNFPNWLADPLFLKLVKLSLRNCKNCYSLPALGQLPFLKFLSIREMHGITEVTEEFYGSWSSKKPFNCLEKLEFKDMPEWKQWDLLGSGEFPILEKLLIENCPELSLETVPIQLSSLKS |
| superfamily: SSF52540 | 160-410 | SSF52540 | TKQETRTPSTSLVDDSDIFGRQNDIEDLIDRLLSEDASGKKRTVVPIVGMGGLGKTTLAKAVYNDERVQIHFGLKAWFCVSEAFDAFRITKGLLQEIGSFDLKADDNLNQLQVKLKERLKGKKFLIVLDDVWNDNYNKWDELRNVFVQGDIGSKIIVTTRKESVALMMGNEQISMDNLSTESSWSLFKTHAFENMGPMGHPELEEVGKQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHN |
| Gene3D: G3DSA:3.40.50.300 | 172-317 | G3DSA:3.40.50.300 | VDDSDIFGRQNDIEDLIDRLLSEDASGKKRTVVPIVGMGGLGKTTLAKAVYNDERVQIHFGLKAWFCVSEAFDAFRITKGLLQEIGSFDLKADDNLNQLQVKLKERLKGKKFLIVLDDVWNDNYNKWDELRNVFVQGDIGSKIIVT |
| HMMPfam: PF00931 IPR002182
|
180-462 | NB-ARC,NBS NB-ARC
|
RQNDIEDLIDRLLSEDASGKKRTVVPIVGMGGLGKTTLAKAVYNDERVQIHFGLKAWFCVSEAFDAFRITKGLLQEIGSFDLKADDNLNQLQVKLKERLKGKKFLIVLDDVWNDNYNKWDELRNVFVQGDIGSKIIVTTRKESVALMMGNEQISMDNLSTESSWSLFKTHAFENMGPMGHPELEEVGKQIAAKCKGLPLALKTLAGMLRSKSEVEEWKRILRSEIWELPHNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPQED |
| FPrintScan: PR00364 IPR000767
|
203-218 | DISEASERSIST Disease resistance protein
|
VVPIVGMGGLGKTTLA |
| FPrintScan: PR00364 IPR000767
|
277-291 | DISEASERSIST Disease resistance protein
|
RLKGKKFLIVLDDVW |
| FPrintScan: PR00364 IPR000767
|
373-387 | DISEASERSIST Disease resistance protein
|
CKGLPLALKTLAGML |
| superfamily: SSF52058 | 498-971 | SSF52058,LRR | LMHDLVNDLAQIASSKLCIRLEESQGSHMLEQSQHLSYSMGYGGEFEKLTPLYKLEQLRTLLPTCIDLPDCCHHLSKRVLHNILPRLTSLRALSLSCYEIVELPNDLFIKLKLLRFLDISRTEIKRLPDSICALYNLETLLLSSCYDLEELPLQMEKLINLRHLDISNTRLLKMPLHLSKLKSLQVLVGAKFLIGGLRMEDLGEVHNLYGSLSVVELQNVVDRREAVKAKMREKNHVDRLYLEWSGSSSADNSQTERDILDELRPHKNIKVVKITGYRGTNFPNWLADPLFLKLVKLSLRNCKNCYSLPALGQLPFLKFLSIREMHGITEVTEEFYGSWSSKKPFNCLEKLEFKDMPEWKQWDLLGSGEFPILEKLLIENCPELSLETVPIQLSSLKSFDVIGSPLVINFPLSILPTTLKRIKISDCQKLKLEQPTGEISMFLEELTLIKCDCIDDISPELLPRARKLWVQDWH |
| Gene3D: G3DSA:3.80.10.10 | 571-717 | G3DSA:3.80.10.10 | HLSKRVLHNILPRLTSLRALSLSCYEIVELPNDLFIKLKLLRFLDISRTEIKRLPDSICALYNLETLLLSSCYDLEELPLQMEKLINLRHLDISNTRLLKMPLHLSKLKSLQVLVGAKFLIGGLRMEDLGEVHNLYGSLSVVELQNV |
| FPrintScan: PR00364 IPR000767
|
653-669 | DISEASERSIST Disease resistance protein
|
EKLINLRHLDISNTRLL |
| Gene3D: G3DSA:3.80.10.10 | 775-874 | G3DSA:3.80.10.10 | RGTNFPNWLADPLFLKLVKLSLRNCKNCYSLPALGQLPFLKFLSIREMHGITEVTEEFYGSWSSKKPFNCLEKLEFKDMPEWKQWDLLGSGEFPILEKLL |
| Gene3D: G3DSA:3.80.10.10 | 875-1063 | G3DSA:3.80.10.10 | IENCPELSLETVPIQLSSLKSFDVIGSPLVINFPLSILPTTLKRIKISDCQKLKLEQPTGEISMFLEELTLIKCDCIDDISPELLPRARKLWVQDWHNLTRFLIPTATETLDIWNCENVEILSVACGGTQMTSLTIAYCKKLKWLPERMQELLPSLKELHLSNCPEIESFPEGGLPFNLQQLAIRYCKK |
| superfamily: SSF52058 | 1003-1271 | SSF52058,LRR | TQMTSLTIAYCKKLKWLPERMQELLPSLKELHLSNCPEIESFPEGGLPFNLQQLAIRYCKKLVNGRKEWHLQRRLCLTALIIYHDGSDEEIVGGENWELPSSIQRLTIVNLKTLSSQHLKNLTSLQYLFIRGNLPQIQPMLEQGQCSHLTSLQSLQISSLQSLPESALPSSLSHLEISHCPNLQSLPESALPSSLSQLTINNCPNLQSLSESTLPSSLSQLEISFCPNLQYLPLKGMPSSLSELSIYKCPLLKPQLEFDKGEYWPNIAQ |
| HMMPfam: PF00560 IPR001611
|
1029-1049 | LRR_1 Leucine-rich repeat
|
SLKELHLSNCPEIESFPEGGL |
| Gene3D: G3DSA:3.80.10.10 | 1103-1252 | G3DSA:3.80.10.10 | SSIQRLTIVNLKTLSSQHLKNLTSLQYLFIRGNLPQIQPMLEQGQCSHLTSLQSLQISSLQSLPESALPSSLSHLEISHCPNLQSLPESALPSSLSQLTINNCPNLQSLSESTLPSSLSQLEISFCPNLQYLPLKGMPSSLSELSIYKCP |
| HMMPfam: PF00560 IPR001611
|
1173-1193 | LRR_1 Leucine-rich repeat
|
SLSHLEISHCPNLQSLPESAL |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Late Blight Tomato | Phytophthora infestans | PRGAV00000038 |
List of References
Sanwen Huang, Edwin A G van der Vossen, Hanhui Kuang, Vivianne G A A Vleeshouwers, Ningwen Zhang, Theo J A Borm, Herman J van Eck, Barbara Baker, Evert Jacobsen, Richard G F Visser
Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato.
Plant J.: 2005, 42(2);251-61
PubMed:15807786
WorldCat.org
DOI
(P p)
List of Contributions
There has not been any contribution yet.
