PRGDB00000048 (Rpi-blb1)
Rpi-blb1 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 32693280 (AY336128) |
Gene Class | CNL |
Domain Type | LRR, NBS, LRR, LRR, Others |
Chromosome | 8 |
Gene Species | Solanum bulbocastanum |
DNA Sequence
ATGGCTGAAGCTTTCATTCAAGTTCTGCTAGACAATCTCACTTCTTTCCTCAAAGGGGAACTTGTATTGCTTTTCGGTTTTCAAGATGAGTTCCAAAGGCTTTCAAGCATGTTTTCTACAATTCAAGCCGTCCTTGAAGATGCTCAGGAGAAGCAACTCAACAACAAGCCTCTAGAAAATTGGTTGCAAAAACTCAATGCTGCTACATATGAAGTCGATGACATCTTGGATGAATATAAAACCAAGGCCACAAGATTCTCCCAGTCTGAATATGGCCGTTATCATCCAAAGGTTATCCCTTTCCGTCACAAGGTCGGGAAAAGGATGGACCAAGTGATGAAAAAACTAAAGGCAATTGCTGAGGAAAGAAAGAATTTTCATTTGCACGAAAAAATTGTAGAGAGACAAGCTGTTAGACGGGAAACAGGTTCTGTATTAACCGAACCGCAGGTTTATGGAAGAGACAAAGAGAAAGATGAGATAGTGAAAATCCTAATAAACAATGTTAGTGATGCCCAACACCTTTCAGTCCTCCCAATACTTGGTATGGGGGGATTAGGAAAAACGACTCTTGCCCAAATGGTCTTCAATGACCAGAGAGTTACTGAGCATTTCCATTCCAAAATATGGATTTGTGTCTCGGAAGATTTTGATGAGAAGAGGTTAATAAAGGCAATTGTAGAATCTATTGAAGGAAGGCCACTACTTGGTGAGATGGACTTGGCTCCACTTCAAAAGAAGCTTCAGGAGTTGCTGAATGGAAAAAGATACTTGCTTGTCTTAGATGATGTTTGGAATGAAGATCAACAGAAGTGGGCTAATTTAAGAGCAGTCTTGAAGGTTGGAGCAAGTGGTGCTTCTGTTCTAACCACTACTCGTCTTGAAAAGGTTGGATCAATTATGGGAACATTGCAACCATATGAACTGTCAAATCTGTCTCAAGAAGATTGTTGGTTGTTGTTCATGCAACGTGCATTTGGACACCAAGAAGAAATAAATCCAAACCTTGTGGCAATCGGAAAGGAGATTGTGAAAAAAAGTGGTGGTGTGCCTCTAGCAGCCAAAACTCTTGGAGGTATTTTGTGCTTCAAGAGAGAAGAAAGAGCATGGGAACATGTGAGAGACAGTCCGATTTGGAATTTGCCTCAAGATGAAAGTTCTATTCTGCCTGCCCTGAGGCTTAGTTACCATCAACTTCCACTTGATTTGAAACAATGCTTTGCGTATTGTGCGGTGTTCCCAAAGGATGCCAAAATGGAAAAAGAAAAGCTAATCTCTCTCTGGATGGCGCATGGTTTTCTTTTATCAAAAGGAAACATGGAGCTAGAGGATGTGGGCGATGAAGTATGGAAAGAATTATACTTGAGGTCTTTTTTCCAAGAGATTGAAGTTAAAGATGGTAAAACTTATTTCAAGATGCATGATCTCATCCATGATTTGGCAACATCTCTGTTTTCAGCAAACACATCAAGCAGCAATATCCGTGAAATAAATAAACACAGTTACACACATATGATGTCCATTGGTTTCGCCGAAGTGGTGTTTTTTTACACTCTTCCCCCCTTGGAAAAGTTTATCTCGTTAAGAGTGCTTAATCTAGGTGATTCGACATTTAATAAGTTACCATCTTCCATTGGAGATCTAGTACATTTAAGATACTTGAACCTGTATGGCAGTGGCATGCGTAGTCTTCCAAAGCAGTTATGCAAGCTTCAAAATCTGCAAACTCTTGATCTACAATATTGCACCAAGCTTTGTTGTTTGCCAAAAGAAACAAGTAAACTTGGTAGTCTCCGAAATCTTTTACTTGATGGTAGCCAGTCATTGACTTGTATGCCACCAAGGATAGGATCATTGACATGCCTTAAGACTCTAGGTCAATTTGTTGTTGGAAGGAAGAAAGGTTATCAACTTGGTGAACTAGGAAACCTAAATCTCTATGGCTCAATTAAAATCTCGCATCTTGAGAGAGTGAAGAATGATAAGGACGCAAAAGAAGCCAATTTATCTGCAAAAGGGAATCTGCATTCTTTAAGCATGAGTTGGAATAACTTTGGACCACATATATATGAATCAGAAGAAGTTAAAGTGCTTGAAGCCCTCAAACCACACTCCAATCTGACTTCTTTAAAAATCTATGGCTTCAGAGGAATCCATCTCCCAGAGTGGATGAATCACTCAGTATTGAAAAATATTGTCTCTATTCTAATTAGCAACTTCAGAAACTGCTCATGCTTACCACCCTTTGGTGATCTGCCTTGTCTAGAAAGTCTAGAGTTACACTGGGGGTCTGCGGATGTGGAGTATGTTGAAGAAGTGGATATTGATGTTCATTCTGGATTCCCCACAAGAATAAGGTTTCCATCCTTGAGGAAACTTGATATATGGGACTTTGGTAGTCTGAAAGGATTGCTGAAAAAGGAAGGAGAAGAGCAATTCCCTGTGCTTGAAGAGATGATAATTCACGAGTGCCCTTTTCTGACCCTTTCTTCTAATCTTAGGGCTCTTACTTCCCTCAGAATTTGCTATAATAAAGTAGCTACTTCATTCCCAGAAGAGATGTTCAAAAACCTTGCAAATCTCAAATACTTGACAATCTCTCGGTGCAATAATCTCAAAGAGCTGCCTACCAGCTTGGCTAGTCTGAATGCTTTGAAAAGTCTAAAAATTCAATTGTGTTGCGCACTAGAGAGTCTCCCTGAGGAAGGGCTGGAAGGTTTATCTTCACTCACAGAGTTATTTGTTGAACACTGTAACATGCTAAAATGTTTACCAGAGGGATTGCAGCACCTAACAACCCTCACAAGTTTAAAAATTCGGGGATGTCCACAACTGATCAAGCGGTGTGAGAAGGGAATAGGAGAAGACTGGCACAAAATTTCTCACATTCCTAATGTGAATATATATATTTAA
Protein sequences
Name | Description | Sequence |
---|---|---|
putative disease resistant protein RGA2 | putative disease resistant protein RGA2 [Solanum bulbocastanum]. | MAEAFIQVLLDNLTSFLKGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFSQSEYGRYHPKVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRRETGSVLTEPQVYGRDKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIWICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLATSLFSANTSSSNIREINKHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIYI |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR23155 | 13-947 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LTSFLKGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFSQSEYGRYHPKVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRRETGSVLTEPQVYGRDKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIWICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLATSLFSANTSSSNIREINKHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIK |
superfamily: SSF52540 | 134-384 | SSF52540 | ERQAVRRETGSVLTEPQVYGRDKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIWICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQD |
Gene3D: G3DSA:3.40.50.300 | 153-293 | G3DSA:3.40.50.300 | GRDKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIWICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTR |
HMMPfam: PF00931 IPR002182
|
155-434 | NB-ARC,NBS NB-ARC
|
DKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIWICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFL |
FPrintScan: PR00364 IPR000767
|
177-192 | DISEASERSIST Disease resistance protein
|
VLPILGMGGLGKTTLA |
FPrintScan: PR00364 IPR000767
|
251-265 | DISEASERSIST Disease resistance protein
|
LLNGKRYLLVLDDVW |
FPrintScan: PR00364 IPR000767
|
347-361 | DISEASERSIST Disease resistance protein
|
SGGVPLAAKTLGGIL |
superfamily: SSF52058 | 472-830 | SSF52058,LRR | KMHDLIHDLATSLFSANTSSSNIREINKHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLS |
Gene3D: G3DSA:3.80.10.10 | 481-625 | G3DSA:3.80.10.10 | ATSLFSANTSSSNIREINKHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTL |
FPrintScan: PR00364 IPR000767
|
569-585 | DISEASERSIST Disease resistance protein
|
CKLQNLQTLDLQYCTKL |
HMMPfam: PF00560 IPR001611
|
573-591 | LRR_1 Leucine-rich repeat
|
NLQTLDLQYCTKLCCLPKE |
Gene3D: G3DSA:3.80.10.10 | 706-762 | G3DSA:3.80.10.10 | NLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHW |
Gene3D: G3DSA:3.80.10.10 | 779-948 | G3DSA:3.80.10.10 | SGFPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKR |
superfamily: SSF52058 | 781-945 | SSF52058,LRR | FPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQL |
HMMPfam: PF13855 | 860-919 | LRR_8,Leucine rich repeat | NLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCN |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Late Blight Tomato | Phytophthora infestans |
List of Contributions
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