PRGDB00000050 (Rx)
| Rx | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 5524753 (AJ011801) |
| Gene Class | CNL |
| Domain Type | LRR, NBS, Others |
| Chromosome | 12 |
| Gene Species | Solanum tuberosum |
DNA Sequence
ATGGCTTATGCTGCTGTTACTTCCCTTATGAGAACCATACATCAATCAATGGAACTTACTGGATGTGATTTGCAACCGTTTTATGAAAAGCTCAAATCTTTGAGAGCTATTCTGGAGAAATCCTGCAATATAATGGGCGATCATGAGGGGTTAACAATCTTGGAAGTTGAAATCGTAGAGGTAGCATACACAACAGAAGATATGGTTGACTCGGAATCAAGAAATGTTTTTTTAGCACAGAATTTGGAGGAAAGAAGCAGGGCTATGTGGGAGATTTTTTTCGTCCTGGAACAAGCACTAGAATGCATTGATTCCACCGTGAAACAGTGGATGGCAACATCGGACAGCATGAAAGATCTAAAACCACAAACTAGCTCGCTTGTCAGTTTACCTGAACATGATGTTGAGCAGCCCGAGAATATAATGGTTGGCCGTGAAAATGAATTTGAGATGATGCTGGATCAACTTGCTAGAGGAGGAAGGGAACTAGAAGTTGTCTCAATCGTAGGGATGGGAGGCATCGGGAAAACAACTTTGGCTACAAAACTCTATAGTGATCCGTGCATTATGTCTCGATTTGATATTCGTGCAAAAGCAACTGTTTCACAAGAGTATTGTGTGAGAAATGTACTCCTAGGCCTTCTTTCTTTGACAAGTGATGAACCTGATGATCAGCTAGCGGACCGACTGCAAAAGCATCTGAAAGGCAGGAGATACTTGGTAGTCATTGATGACATATGGACTACAGAAGCTTGGGATGATATAAAACTATGTTTCCCAGACTGTTATAATGGAAGCAGAATACTCCTGACTACTCGGAATGTGGAAGTGGCTGAATATGCTAGTTCAGGTAAGCCTCCTCATCACATGCGCCTCATGAATTTTGACGAAAGTTGGAATTTACTACACAAAAAGATCTTTGAAAAAGAAGGTTCTTATTCTCCTGAATTTGAAAATATTGGGAAACAAATTGCATTAAAATGTGGAGGATTACCTCTAGCAATTACTGTGATTGCTGGACTTCTCTCCAAAATGGGTCAAAGATTAGATGAGTGGCAAAGAATTGGGGAAAATGTAAGTTCGGTCGTTAGCACAGATCCTGAAGCACAATGCATGAGAGTGTTGGCTTTGAGTTACCATCACTTGCCTTCTCACCTAAAACCGTGTTTTCTGTATTTTGCAATTTTCACAGAGGATGAACAGATTTCTGTAAATGAACTTGTTGAGTTATGGCCTGTAGAGGGATTTTTGAATGAAGAAGAGGGAAAAAGCATAGAAGAGGTGGCAACAACATGTATAAACGAACTTATAGATAGAAGCTTAATTTTCATCCACAATTTTAGTTTTCGTGGAACAATAGAAAGTTGTGGAATGCATGATGTGACCCGTGAACTCTGTTTGAGGGAAGCTCGAAACATGAATTTTGTGAATGTTATCAGAGGAAAGAGTGATCAAAATTCATGTGCACAATCCATGCAGCGTTCCTTTAAGAGTCGAAGTCGGATCAGAATCCATAAGGTGGAAGAATTGGCTTGGTGTCGTAACAGTGAGGCTCATTCTATTATCATGTTGGGTGGATTCGAATGCGTCACACTGGAATTGTCTTTCAAGCTAGTAAGAGTACTAGATCTTGGTTTGAATACATGGCCAATTTTTCCCAGTGGAGTACTTTCTCTAATTCATTTGAGATACCTATCTTTGCGTTTTAATCCTTGCTTACAGCAGTATCAAGGATCGAAAGAAGCTGTTCCCTCATCAATAATAGACATTCCTCTATCGATATCAAGCCTATGCTATCTGCAAACTTTTAAACTTAACCTTCCATTTCCCAGTTATTATCCTTTCATATTACCATCGGAAATTTTGACGATGCCACAATTGAGGACGCTGTGTATGGGCTGGAATTACTTGCGGAGTCATGAGCCTACAGAGAACAGATTGGTTTTGAAAAATTTGCAATGCCTCAATCAATTGAACCCTCGGTATTGTACAGGGTCTTTTTTTAGACTATTTCCCAATTTAAAGAAGTTGCAAGTATTTGGCGTCCCAGAAGACTTTCGCAATAGCCAGGACCTGTATGATTTTCGCTACTTATATCAGCTCGAAGAATTGACATTTCGTTTATATTATCCATATGCTGCTTGCTTTCTAAAAAACACTGCACCTTCAGGTTCTACGCAAGATCCTCTGAGGTTTCAGACGGAAATATTGCACAAAGAGATTGATTTCGGGGGAACTGCACCTCCAACTTTACTCTTACCTCCTCCGGATGCTTTTCCACAAAACCTTAAGAGTTTAACTTTTAGGGGAGAATTCTCTGTGGCATGGAAGGATTTGAGCATTGTTGGTAAATTACCCAAACTCGAGGTCCTTATACTATCATGGAATGCCTTCATAGGCAAGGAGTGGGAAGTAGTTGAGGAAGGGTTTCCTCACTTGAAGTTCTTGTTTCTGGATGATGTATACATTCGATACTGGAGAGCTAGTAGTGATCACTTTCCGTACCTTGAACGAGTTATTCTTAGAGATTGCCGTAATTTGGATTCAATCCCTCGAGATTTTGCAGATATAACCACACTAGCTCTTATTGATATAGATTACTGTCAACAATCTGTTGTGAATTCCGCCAAGCAAATTCAACAGGACATTCAAGACAACTATGGAAGCTCTATCGAGGTCCATACTCGTCATCTTTTCATTCCCAAGAGTGTGACAACAGTTGAAGATGATGATGATAGTGTGACAACAGATGAAGATGATGATGATGATGACTTTGAGAAAGAAGTTGCTTCTTGCCGCAATAATGTCGAGTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Rx protein | Rx protein [Solanum tuberosum]. | MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNIMGDHEGLTILEVEIVEVAYTTEDMVDSESRNVFLAQNLEERSRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPEHDVEQPENIMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLATKLYSDPCIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCYNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIGENVSSVVSTDPEAQCMRVLALSYHHLPSHLKPCFLYFAIFTEDEQISVNELVELWPVEGFLNEEEGKSIEEVATTCINELIDRSLIFIHNFSFRGTIESCGMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQRSFKSRSRIRIHKVEELAWCRNSEAHSIIMLGGFECVTLELSFKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMGWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGSFFRLFPNLKKLQVFGVPEDFRNSQDLYDFRYLYQLEELTFRLYYPYAACFLKNTAPSGSTQDPLRFQTEILHKEIDFGGTAPPTLLLPPPDAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLKFLFLDDVYIRYWRASSDHFPYLERVILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVNSAKQIQQDIQDNYGSSIEVHTRHLFIPKSVTTVEDDDDSVTTDEDDDDDDFEKEVASCRNNVE |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR11017:SF129 | 1-480 | PTHR11017:SF129 | MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNIMGDHEGLTILEVEIVEVAYTTEDMVDSESRNVFLAQNLEERSRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPEHDVEQPENIMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLATKLYSDPCIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCYNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIGENVSSVVSTDPEAQCMRVLALSYHHLPSHLKPCFLYFAIFTEDEQISVNELVELWPVEGFLNEEEGKSIEEVATTCINELIDRSLIFIHNFSFRGTIESCGMHDVTRELCLREARNMNFVNVIR |
| HMMPanther: PTHR11017 | 1-480 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNIMGDHEGLTILEVEIVEVAYTTEDMVDSESRNVFLAQNLEERSRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPEHDVEQPENIMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLATKLYSDPCIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCYNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIGENVSSVVSTDPEAQCMRVLALSYHHLPSHLKPCFLYFAIFTEDEQISVNELVELWPVEGFLNEEEGKSIEEVATTCINELIDRSLIFIHNFSFRGTIESCGMHDVTRELCLREARNMNFVNVIR |
| superfamily: SSF52540 | 117-366 | SSF52540 | MKDLKPQTSSLVSLPEHDVEQPENIMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLATKLYSDPCIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCYNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIGENVSSVVSTD |
| HMMPfam: PF00931 IPR002182
|
145-420 | NB-ARC,NBS NB-ARC
|
RENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLATKLYSDPCIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCYNGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKMGQRLDEWQRIGENVSSVVSTDPEAQCMRVLALSYHHLPSHLKPCFLYFAIFTEDEQISVNELVELWPVEGFLNEE |
| Gene3D: G3DSA:3.40.50.300 | 150-276 | G3DSA:3.40.50.300 | EMMLDQLARGGRELEVVSIVGMGGIGKTTLATKLYSDPCIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCYNGSRILLTTRNVE |
| FPrintScan: PR00364 IPR000767
|
165-180 | DISEASERSIST Disease resistance protein
|
VVSIVGMGGIGKTTLA |
| FPrintScan: PR00364 IPR000767
|
233-247 | DISEASERSIST Disease resistance protein
|
HLKGRRYLVVIDDIW |
| FPrintScan: PR00364 IPR000767
|
328-342 | DISEASERSIST Disease resistance protein
|
CGGLPLAITVIAGLL |
| superfamily: SSF52058 | 457-874 | SSF52058,LRR | GMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQRSFKSRSRIRIHKVEELAWCRNSEAHSIIMLGGFECVTLELSFKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMGWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGSFFRLFPNLKKLQVFGVPEDFRNSQDLYDFRYLYQLEELTFRLYYPYAACFLKNTAPSGSTQDPLRFQTEILHKEIDFGGTAPPTLLLPPPDAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLKFLFLDDVYIRYWRASSDHFPYLERVILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVN |
| Gene3D: G3DSA:3.80.10.10 | 536-666 | G3DSA:3.80.10.10 | FKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMGWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGS |
| Gene3D: G3DSA:3.80.10.10 | 757-880 | G3DSA:3.80.10.10 | DAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLKFLFLDDVYIRYWRASSDHFPYLERVILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVNSAKQIQ |
| FPrintScan: PR00364 IPR000767
|
783-799 | DISEASERSIST Disease resistance protein
|
GKLPKLEVLILSWNAFI |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Latent Mosaic | Potato virus X | PRGAV00000039 |
| Beet cyst nematode | Potato virus X | PRGAV00000039 |
List of References
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