PRGDB00000051 (Rx2)

Rx2
Gene Type	Reference_R-Genes,_manually_curated
GenBank	5918253 (AJ249448)
Gene Class	CNL
Domain Type	LRR, NBS, Others
Chromosome	5
Gene Species	Solanum acaule
	Comment?

Solanum acaule Rx2.ac15 gene for NBS-LRR protein, exons 1-3.

DNA Sequence

ATGGCTTATGCTGCTGTTACTTCCCTTATGAGAACCATACATCAATCAATGGAACTTACTGGATGTGATTTGCAACCGTTTTATGAAAAGCTCGAATCTTTAAGAGCTATTCTGGAGAAATCCTGCAATGTAACGGGCGATCATGAGGAGTTAACAATCTTGGAAGTTGAAATCTTAGAGGTAGCATACACAACAGAAGATATGGTTGACTCGGAATCAAGAAGTGTTTTTTTAGCACAGAATTTGGAGGAAAGAAACAGGGCTATGTGGGAGATTTTTTTCGTCTTGGAACAAGCACTAGAATGCATTGATTCCACCGTGAAACAGTGGATGGCAACATCGGACAGCATGAAAGATCTAAAACCACAAACTAGCTCACTTGTCAGTTTACCTGACCATGCTTTTGAGCAGCCTGAGAATATAATGGTTGGCCGTGAAAATGAATTTGAGATGATGCTGGATCAACTTGTTAGAGGAGGAAGGGAACTAGAAGTTGTCTCAATCGTAGGGATGGGAGGTATCGGGAAAACAACTTTGGCTACAAAACTCTATAGTGATCCTTACATTATGTCTCGATTTGATATTCGTGCAAAAGCAACTGTTTCACAAGAGTATTGTGTGAGAAATGTACTCCTAGGCCTTCTTTCTTTGACAAGTGATGAACCTGATGATCAACTAGCGGACCGACTGCAAAAGCATCTGAAAGGCAGGAGATACTTGGTAGTCATTGATGACATATGGACTACAAAAGCTTGGGATGGTATAAAACTATGTTTCCCAGACTGTTATAAGGGAAGCAGAATACTCCTGACTACTCGGAATGTGGAAGTGGCTGAATATGCTAGTTCAGGTAAGCCTCCTCATCACATGCGCCTCATGAATTTTGACGAAAGTTGGAATTTACTACACAAAAAGATCTTTGAAAAAGAAGGTTCTTATTCTCCTGAATTTGAAAATATTGGGAAACAAATTGCATTAAAATGTGGAGGATTACCTCTAGCAATTACTGTGATTGCTGGACTTCTCTCCAAAATCAGTAAAACATTGGATGAGTGGCAAAATGTTGCGGAGAATGTAAGTTCGGTGGTAAGCACAGATCTTGAAGCAAAATGCATGAGAGTGTTGGCTTTGAGTTACCATCACTTGCCTTCTCACCTAAAACCGTGTTTTCTATATTTTGCAATTTTCGCAGAGGATGAACGGATTTCTGTAACTAAACTTGTTGAGTTATGGGCTGTAGAGGGGTTTTTGAATGAAGAAGAGGGAAAAAGCATAGAAGAGGTGGCAGAAACATGTATAAACGAGCTTGTAGATAGAAGTCTAATTTCTATCCACAATTTGAGTTTTGATGGGAAAATAGAAAGTTGTGGAATGCATGATGTGACCCGTGAACTCTGTTTGAGGGAAGCTCGAAACATGAATTTTGTAAATGTTATCAGAGGAAAGAGTGATCAAAATTCATGTGCACAATCCATGCAGCGTTCCTTTAAGAGTCGAAGTCGGATCAGAATCCATAAGCTGGAAGAATTGGCTTGGTGTCGTAACAGTGAGGCTCATTCTATTATCATGTTGGGTGGATTCGAATGCGTCACACTGGAATTGTCTTTCAAGCTAGTAAGAGTACTAGATCTTGGTTTGAATACATGGCCAATTTTTCCCAGTGGAGTACTTTCTCTAATTCATTTGAGATACCTATCTTTGCGTTTTAATCCTTGCTTACAGCAGTATCAAGGATCGAAAGAAGCTGTTCCCTCATCAATAATAGACATTCCTCTATCGATATCAAGCCTATGCTATCTGCAAACTTTTAAACTTAACCTTCCATTTCCCAGTTATTATCCTTTCATATTACCATCGGAAATTTTGACGATGCCACAATTGAGGACGCTGTGTATGGACTGGAATTACTTGCGGAGTCATGAGCCTACAGAGAACAGATTGGTTTTGAAAAATTTGCAATGCCTCAATCAATTGAACCCTCGGTATTGTACAGGGTCTTTTTTTAGACTATTTCCCAATTTAAAGAAGTTGCAAGTATTTGGCGTCCCAGAAGACTTTCGCAATAGCCAGGACCTGTATGATTTTCGCTACTTATATCAGCTCGAAGAATTGACATTTCGTTTATATTATCCATATGCTGCTTGCTTTCTAAAAAACACTGCACCTTCAGGTTCTACTCCGCAAGATCCTCTGAGGTTTCAGACGGAAATATTGCACAAAGAGATTGATTTCGGGGGAACTGCACCTCCAACTTTACTCTTACCTCCTCCGGATGCTTTTCCACAAAACCTTAAGAGTTTAACTTTTAGGGGAGAATTCTCTGTGGCATGGAAGGATTTGAGCATTGTTGGTAAATTACCCAAACTCGAGGTCCTTATACTATCATGGAATGCCTTCATAGGCAAGGAGTGGGAAGTAGTTGAGGAAGGGTTTCCTCACTTGAACTTCTTGTTTCTGGATGATGTATACATTCGATACTGGAGAGCTAGTAGTGATCACTTTCCGTACCTTGAACGACTTATTCTTAGAGATTGCCGTAATTTGGATTCAATCCCTCGAGATTTTGCAGATATAACCACACTAGCTCTTATTGATATAGATTACTGTCAACAATCTGTTGTGAATTCCGCCAAGCAAATTCAACAGGACATTCAAGACAACTATGGAAGCTCTATCGAGGTCCATACTCGTCATCTTTTCATTCCCAAGAGTGTGACAACAGTTGAAGATGATGATGATAGTGTGACAACAGATGAAGATGATGATGATGATGACTTTGAGAAAGAAGTTGCTTCTTGCCGCAATAATGTCGAGTAG

Protein sequences

Name	Description	Sequence
NBS-LRR protein	NBS-LRR protein [Solanum acaule].	MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLESLRAILEKSCNVTGDHEELTILEVEILEVAYTTEDMVDSESRSVFLAQNLEERNRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPDHAFEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERISVTKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNLSFDGKIESCGMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQRSFKSRSRIRIHKLEELAWCRNSEAHSIIMLGGFECVTLELSFKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMDWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGSFFRLFPNLKKLQVFGVPEDFRNSQDLYDFRYLYQLEELTFRLYYPYAACFLKNTAPSGSTPQDPLRFQTEILHKEIDFGGTAPPTLLLPPPDAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLNFLFLDDVYIRYWRASSDHFPYLERLILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVNSAKQIQQDIQDNYGSSIEVHTRHLFIPKSVTTVEDDDDSVTTDEDDDDDDFEKEVASCRNNVE

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11017:SF14	1-480	PTHR11017:SF14	MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLESLRAILEKSCNVTGDHEELTILEVEILEVAYTTEDMVDSESRSVFLAQNLEERNRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPDHAFEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERISVTKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNLSFDGKIESCGMHDVTRELCLREARNMNFVNVIR
HMMPanther: PTHR11017	1-480	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLESLRAILEKSCNVTGDHEELTILEVEILEVAYTTEDMVDSESRSVFLAQNLEERNRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPDHAFEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERISVTKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNLSFDGKIESCGMHDVTRELCLREARNMNFVNVIR
superfamily: SSF52540	125-367	SSF52540	SSLVSLPDHAFEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDL
HMMPfam: PF00931 IPR002182	145-420	NB-ARC,NBS NB-ARC	RENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERISVTKLVELWAVEGFLNEE
Gene3D: G3DSA:3.40.50.300	154-274	G3DSA:3.40.50.300	DQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRN
FPrintScan: PR00364 IPR000767	165-180	DISEASERSIST Disease resistance protein	VVSIVGMGGIGKTTLA
FPrintScan: PR00364 IPR000767	233-247	DISEASERSIST Disease resistance protein	HLKGRRYLVVIDDIW
FPrintScan: PR00364 IPR000767	328-342	DISEASERSIST Disease resistance protein	CGGLPLAITVIAGLL
superfamily: SSF52058	457-875	SSF52058,LRR	GMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQRSFKSRSRIRIHKLEELAWCRNSEAHSIIMLGGFECVTLELSFKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMDWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGSFFRLFPNLKKLQVFGVPEDFRNSQDLYDFRYLYQLEELTFRLYYPYAACFLKNTAPSGSTPQDPLRFQTEILHKEIDFGGTAPPTLLLPPPDAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLNFLFLDDVYIRYWRASSDHFPYLERLILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVN
Gene3D: G3DSA:3.80.10.10	535-666	G3DSA:3.80.10.10	SFKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMDWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGS
Gene3D: G3DSA:3.80.10.10	758-881	G3DSA:3.80.10.10	DAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLNFLFLDDVYIRYWRASSDHFPYLERLILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVNSAKQIQ
FPrintScan: PR00364 IPR000767	784-800	DISEASERSIST Disease resistance protein	GKLPKLEVLILSWNAFI

Diseases

Disease	Pathogen	Avirulence gene
Latent Mosaic	Potato virus X	PRGAV00000039
Beet cyst nematode	Potato virus X	PRGAV00000039

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Analyses

Blast

Blast matches against Reference R-Genes. Show