PRGDB00000051 (Rx2)
| Rx2 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 5918253 (AJ249448) |
| Gene Class | CNL |
| Domain Type | LRR, NBS, Others |
| Chromosome | 5 |
| Gene Species | Solanum acaule |
DNA Sequence
ATGGCTTATGCTGCTGTTACTTCCCTTATGAGAACCATACATCAATCAATGGAACTTACTGGATGTGATTTGCAACCGTTTTATGAAAAGCTCGAATCTTTAAGAGCTATTCTGGAGAAATCCTGCAATGTAACGGGCGATCATGAGGAGTTAACAATCTTGGAAGTTGAAATCTTAGAGGTAGCATACACAACAGAAGATATGGTTGACTCGGAATCAAGAAGTGTTTTTTTAGCACAGAATTTGGAGGAAAGAAACAGGGCTATGTGGGAGATTTTTTTCGTCTTGGAACAAGCACTAGAATGCATTGATTCCACCGTGAAACAGTGGATGGCAACATCGGACAGCATGAAAGATCTAAAACCACAAACTAGCTCACTTGTCAGTTTACCTGACCATGCTTTTGAGCAGCCTGAGAATATAATGGTTGGCCGTGAAAATGAATTTGAGATGATGCTGGATCAACTTGTTAGAGGAGGAAGGGAACTAGAAGTTGTCTCAATCGTAGGGATGGGAGGTATCGGGAAAACAACTTTGGCTACAAAACTCTATAGTGATCCTTACATTATGTCTCGATTTGATATTCGTGCAAAAGCAACTGTTTCACAAGAGTATTGTGTGAGAAATGTACTCCTAGGCCTTCTTTCTTTGACAAGTGATGAACCTGATGATCAACTAGCGGACCGACTGCAAAAGCATCTGAAAGGCAGGAGATACTTGGTAGTCATTGATGACATATGGACTACAAAAGCTTGGGATGGTATAAAACTATGTTTCCCAGACTGTTATAAGGGAAGCAGAATACTCCTGACTACTCGGAATGTGGAAGTGGCTGAATATGCTAGTTCAGGTAAGCCTCCTCATCACATGCGCCTCATGAATTTTGACGAAAGTTGGAATTTACTACACAAAAAGATCTTTGAAAAAGAAGGTTCTTATTCTCCTGAATTTGAAAATATTGGGAAACAAATTGCATTAAAATGTGGAGGATTACCTCTAGCAATTACTGTGATTGCTGGACTTCTCTCCAAAATCAGTAAAACATTGGATGAGTGGCAAAATGTTGCGGAGAATGTAAGTTCGGTGGTAAGCACAGATCTTGAAGCAAAATGCATGAGAGTGTTGGCTTTGAGTTACCATCACTTGCCTTCTCACCTAAAACCGTGTTTTCTATATTTTGCAATTTTCGCAGAGGATGAACGGATTTCTGTAACTAAACTTGTTGAGTTATGGGCTGTAGAGGGGTTTTTGAATGAAGAAGAGGGAAAAAGCATAGAAGAGGTGGCAGAAACATGTATAAACGAGCTTGTAGATAGAAGTCTAATTTCTATCCACAATTTGAGTTTTGATGGGAAAATAGAAAGTTGTGGAATGCATGATGTGACCCGTGAACTCTGTTTGAGGGAAGCTCGAAACATGAATTTTGTAAATGTTATCAGAGGAAAGAGTGATCAAAATTCATGTGCACAATCCATGCAGCGTTCCTTTAAGAGTCGAAGTCGGATCAGAATCCATAAGCTGGAAGAATTGGCTTGGTGTCGTAACAGTGAGGCTCATTCTATTATCATGTTGGGTGGATTCGAATGCGTCACACTGGAATTGTCTTTCAAGCTAGTAAGAGTACTAGATCTTGGTTTGAATACATGGCCAATTTTTCCCAGTGGAGTACTTTCTCTAATTCATTTGAGATACCTATCTTTGCGTTTTAATCCTTGCTTACAGCAGTATCAAGGATCGAAAGAAGCTGTTCCCTCATCAATAATAGACATTCCTCTATCGATATCAAGCCTATGCTATCTGCAAACTTTTAAACTTAACCTTCCATTTCCCAGTTATTATCCTTTCATATTACCATCGGAAATTTTGACGATGCCACAATTGAGGACGCTGTGTATGGACTGGAATTACTTGCGGAGTCATGAGCCTACAGAGAACAGATTGGTTTTGAAAAATTTGCAATGCCTCAATCAATTGAACCCTCGGTATTGTACAGGGTCTTTTTTTAGACTATTTCCCAATTTAAAGAAGTTGCAAGTATTTGGCGTCCCAGAAGACTTTCGCAATAGCCAGGACCTGTATGATTTTCGCTACTTATATCAGCTCGAAGAATTGACATTTCGTTTATATTATCCATATGCTGCTTGCTTTCTAAAAAACACTGCACCTTCAGGTTCTACTCCGCAAGATCCTCTGAGGTTTCAGACGGAAATATTGCACAAAGAGATTGATTTCGGGGGAACTGCACCTCCAACTTTACTCTTACCTCCTCCGGATGCTTTTCCACAAAACCTTAAGAGTTTAACTTTTAGGGGAGAATTCTCTGTGGCATGGAAGGATTTGAGCATTGTTGGTAAATTACCCAAACTCGAGGTCCTTATACTATCATGGAATGCCTTCATAGGCAAGGAGTGGGAAGTAGTTGAGGAAGGGTTTCCTCACTTGAACTTCTTGTTTCTGGATGATGTATACATTCGATACTGGAGAGCTAGTAGTGATCACTTTCCGTACCTTGAACGACTTATTCTTAGAGATTGCCGTAATTTGGATTCAATCCCTCGAGATTTTGCAGATATAACCACACTAGCTCTTATTGATATAGATTACTGTCAACAATCTGTTGTGAATTCCGCCAAGCAAATTCAACAGGACATTCAAGACAACTATGGAAGCTCTATCGAGGTCCATACTCGTCATCTTTTCATTCCCAAGAGTGTGACAACAGTTGAAGATGATGATGATAGTGTGACAACAGATGAAGATGATGATGATGATGACTTTGAGAAAGAAGTTGCTTCTTGCCGCAATAATGTCGAGTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| NBS-LRR protein | NBS-LRR protein [Solanum acaule]. | MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLESLRAILEKSCNVTGDHEELTILEVEILEVAYTTEDMVDSESRSVFLAQNLEERNRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPDHAFEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERISVTKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNLSFDGKIESCGMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQRSFKSRSRIRIHKLEELAWCRNSEAHSIIMLGGFECVTLELSFKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMDWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGSFFRLFPNLKKLQVFGVPEDFRNSQDLYDFRYLYQLEELTFRLYYPYAACFLKNTAPSGSTPQDPLRFQTEILHKEIDFGGTAPPTLLLPPPDAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLNFLFLDDVYIRYWRASSDHFPYLERLILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVNSAKQIQQDIQDNYGSSIEVHTRHLFIPKSVTTVEDDDDSVTTDEDDDDDDFEKEVASCRNNVE |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR11017:SF14 | 1-480 | PTHR11017:SF14 | MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLESLRAILEKSCNVTGDHEELTILEVEILEVAYTTEDMVDSESRSVFLAQNLEERNRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPDHAFEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERISVTKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNLSFDGKIESCGMHDVTRELCLREARNMNFVNVIR |
| HMMPanther: PTHR11017 | 1-480 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLESLRAILEKSCNVTGDHEELTILEVEILEVAYTTEDMVDSESRSVFLAQNLEERNRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPDHAFEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERISVTKLVELWAVEGFLNEEEGKSIEEVAETCINELVDRSLISIHNLSFDGKIESCGMHDVTRELCLREARNMNFVNVIR |
| superfamily: SSF52540 | 125-367 | SSF52540 | SSLVSLPDHAFEQPENIMVGRENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDL |
| HMMPfam: PF00931 IPR002182
|
145-420 | NB-ARC,NBS NB-ARC
|
RENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRNVEVAEYASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLDEWQNVAENVSSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERISVTKLVELWAVEGFLNEE |
| Gene3D: G3DSA:3.40.50.300 | 154-274 | G3DSA:3.40.50.300 | DQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPYIMSRFDIRAKATVSQEYCVRNVLLGLLSLTSDEPDDQLADRLQKHLKGRRYLVVIDDIWTTKAWDGIKLCFPDCYKGSRILLTTRN |
| FPrintScan: PR00364 IPR000767
|
165-180 | DISEASERSIST Disease resistance protein
|
VVSIVGMGGIGKTTLA |
| FPrintScan: PR00364 IPR000767
|
233-247 | DISEASERSIST Disease resistance protein
|
HLKGRRYLVVIDDIW |
| FPrintScan: PR00364 IPR000767
|
328-342 | DISEASERSIST Disease resistance protein
|
CGGLPLAITVIAGLL |
| superfamily: SSF52058 | 457-875 | SSF52058,LRR | GMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQSMQRSFKSRSRIRIHKLEELAWCRNSEAHSIIMLGGFECVTLELSFKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMDWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGSFFRLFPNLKKLQVFGVPEDFRNSQDLYDFRYLYQLEELTFRLYYPYAACFLKNTAPSGSTPQDPLRFQTEILHKEIDFGGTAPPTLLLPPPDAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLNFLFLDDVYIRYWRASSDHFPYLERLILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVN |
| Gene3D: G3DSA:3.80.10.10 | 535-666 | G3DSA:3.80.10.10 | SFKLVRVLDLGLNTWPIFPSGVLSLIHLRYLSLRFNPCLQQYQGSKEAVPSSIIDIPLSISSLCYLQTFKLNLPFPSYYPFILPSEILTMPQLRTLCMDWNYLRSHEPTENRLVLKNLQCLNQLNPRYCTGS |
| Gene3D: G3DSA:3.80.10.10 | 758-881 | G3DSA:3.80.10.10 | DAFPQNLKSLTFRGEFSVAWKDLSIVGKLPKLEVLILSWNAFIGKEWEVVEEGFPHLNFLFLDDVYIRYWRASSDHFPYLERLILRDCRNLDSIPRDFADITTLALIDIDYCQQSVVNSAKQIQ |
| FPrintScan: PR00364 IPR000767
|
784-800 | DISEASERSIST Disease resistance protein
|
GKLPKLEVLILSWNAFI |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Latent Mosaic | Potato virus X | PRGAV00000039 |
| Beet cyst nematode | Potato virus X | PRGAV00000039 |
List of References
A Bendahmane, M Querci, K Kanyuka, D C Baulcombe
Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: application to the Rx2 locus in potato.
Plant J.: 2000, 21(1);73-81
PubMed:10652152
WorldCat.org
(P p)
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