PRGDB00000052 (RY-1)
| RY-1 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 16944810 (AJ300266) |
| Gene Class | TNL |
| Domain Type | LRR, LRR, NBS, LRR, LRR, TIR, Others |
| Chromosome | 11 |
| Gene Species | Solanum tuberosum subsp andigena |
DNA Sequence
ATGGCATCATCATCTTCTTCTTCTGAGAGTAATTCACAGTATTCATGTCCTCAACGGAAGTACAAGTACGATGTGTTTCTAAGTTTTAGAGATGATAAAAGGCTAGAGAATGGTGATTCCCTCTCGAAAGAACTAGTGAAAGCTATAAAAGAGTCTCAAGTTGCTGTAATCATCTTCTCAAAGAATTATGCTACGTCGAGGTGGTGCCTGAATGAAGTAGTGAAGATTATGGAATGCAAGGAAGAGAATGGACAATTAGTCATACCAGTCTTCTATGATGTGGATCCATCAGATGTTCGGAAGCAAACGAAGAGCTTTGCAGAAGCCTTTGCCGAACACGAATCGAGGTATAAGGATGATGTTGAAGGAATGCAGAAGGTGCAACGATGGAGGACTGCTCTAAGTGAAGCTGCAGATCTAAAAGGATATGATATCCGTGAAAGGATTGAATCAGAATGTATTGGGGAACTTGTTAATGAAATTTCGCCCAAATTATGCGAGACTTCTTTATCTTATTTGACAGATGTTGTGGGAATAGATGCTCATTTAAAGAAAGTCAACTCCCTTCTAGAGATGAAAATCGATGATGTTCGGATTGTGTGGATCTGGGGAATGGGGGGAGTTGGTAAAACGACAATAGCAAGAGCTATTTTTGATATACTCTCATCTAAATTTGATGGTGCTTGTTTCCTTCCGGACAATAAAGAAAACAAGTATGAAATACATTCTCTGCAAAGTATCCTTCTCTCTAAACTGGTAGGGGAAAAAGAAAATTGTGTGCATGATAAGGAGGACGGGAGGCACCTGATGGCTCGTAGACTTCGTTTGAAGAAAGTTCTAGTTGTGCTTGATAACATAGATCATGAAGACCAATTGAAATACCTAGCAGGGGATCTTGGTTGGTTTGGCAATGGCACCAGAATTATTGCAACAACGAGAGACAAGCATTTCATTCGGAAAAATGATGCCGTATATCCTGTGACTACACTACTTGAACATGATGCTGTTCAGTTGTTCAACCAATATGCTTTCAAAAATGAAGTTCCAGATAAGTGTTTCGAGGAGATAACGTTGGAGGTAGTAAGTCATGCTGAAGGCCTTCCTTTAGCCCTGAAAGTGTGGGGTTCTTCCTTACATAAGAAGGATATACATGTGTGGAGGAGTGCTGTTGATCGAATAAAGAGGAACCCTAGTTCAAAAGTTGTTGAAAACCTCAAAGTAAGTTATGATGGGTTGGAGCGCGAAGATCAAGAGATATTTCTAGATATTGCATGCTTCTTAAGAGGGAGAAAACAAACCGAGATCAAGCAAATTCTTGAGAGCTGTGATTTTGGAGCTGATGACGGATTGAGGGTGCTGATTGACAAGTCTCTTGTGTTCATCTCTGAATATGATACGATTCAAATGCATGACTTAATACAAGAGATGGGTAAATACATAGTGACAATGCAAAAGGATCGGGGAGAAGTCACTAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAAGGGACCAAGGCTATCGAAGCAATCTGGATACCAGAAATTCAAGACCTAAGCTTTAGAAAAAAGGCCATGAAAGATGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACCTGATGGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGCTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACTGGAACAAAGAAATTTCCTTTTCTACGGAGGCTAGATCTCAGCAGCTGTGCAAACCTGATGCGAACACCAGATTTCACGGATATGCCAAATTTGGAGTATTTGGGTCTGGAAGAGTGTAGTAATCTTAAAGAGGTTCATCATTCCCTGAGATGTTCCAAAAAACTCATTAAGTTAAATTTGAGAGATTGTAAAAACCTTGAGAGTTTTAGCTATGTTTGTTGGGAATCTCTTGAATGTCTACATCTACAAGGTTGCTCTAATTTAGAGAAATTTCCGAGGATCCGGGGAAAATTGAAGCCGGAGATAGAGATTCAAGTGCAACGCTCTGGGATAAGGAAACTACCATCAGCTATTATTCAGCACCAGTCTAGTCTTACAGAGCTAGATTTGAGTGGCATGAAAAACCTTGCAACACTTTCATGCAGCATTGGCGAGTTGAAAAGTTTGGTGATGCTAAAAGTGTCCTACTGCTCAAAACTCAAAAGCTTGCCAGAAGAGATAGGTGATTTAGAAAACTTGGAGATACTTAAGGCCGGATATACTCTAATCTCACAACCTCCGTCTTCCATCGTTCGCTTGAACAGGCTTAAATTTTTGACTTTTGCAAAACAAAAATCAGAAGTAGGCCTCGAAGATGAAGTGCACTTTGTCTTCCCTCCGGTGAATCAGGGATTATGCTCATTGAAAACTTTGAATCTCAGTTACTGCAATCTAAAAGACGAAGGACTTCCGCAAGACATCGGAAGCTTATCCTCTTTGGAAGTGTTGAATCTGAGGGGAAATAATTTTGAGCATTTGCCTCAAAGCTTGACCCGACTTAGTTCTCTTCAGTCCTTGGACTTATTAGATTGCAAGAGTCTTACACAGCTGCCGGAATTTCCACGGCAATTAGACACAATATATGCAGATTGGAACAATGATTCGATCTGTAATTCGTTGTTTCAAAATATCTCATCATTCCAGCATGACATCTGTGCTTCAGATTCCTTGTCACTAAGAGTGTTTACCAATGAGTGGAAAAATATCCCGAGATGGTTCCACCATCAGGGAAAAGATAAAAGTGTATCAGTCAAATTGCCTGAAAATTGGTATGTGTGCGATAACTTCTTGGGATTTGCTGTATGTTACTCTGGCTGCTTAATTGAAACCACAGCTCAATTCTTATGTGATGAGGGGATGCCGTGTATCACACAGAAACTTGCCTTACCCAAACATTCAGAAGAATTTCCAGAATCTGCTATTCATTTTTTCTTGGTACCTTCTGCTGGCTTATTGGATACATCTAAGGCAAACGGAAAAACACCAAATGATTATAGGCACATTATGTTATCTTTTTCGGAAGAGTTGAAGGAGTTTGGACTTCGTTTGTTGTATAGAGATGAATCTAAGCTTAAGGCCTTGTTTAAAATGACGGAAAATAATGATGAACCAACAGAATATTGCGTCGTGAAAAGGAGGGGTCAATATGATGAGGCCAGATGCTCCTCTTCTAAGAAACAAAGGTCACAGCTCTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| resistance gene-like | resistance gene-like [Solanum tuberosum subsp. andigena]. | MASSSSSSESNSQYSCPQRKYKYDVFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADLKGYDIRERIESECIGELVNEISPKLCETSLSYLTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKVVENLKVSYDGLEREDQEIFLDIACFLRGRKQTEIKQILESCDFGADDGLRVLIDKSLVFISEYDTIQMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSNAKIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAKQKSEVGLEDEVHFVFPPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLPEFPRQLDTIYADWNNDSICNSLFQNISSFQHDICASDSLSLRVFTNEWKNIPRWFHHQGKDKSVSVKLPENWYVCDNFLGFAVCYSGCLIETTAQFLCDEGMPCITQKLALPKHSEEFPESAIHFFLVPSAGLLDTSKANGKTPNDYRHIMLSFSEELKEFGLRLLYRDESKLKALFKMTENNDEPTEYCVVKRRGQYDEARCSSSKKQRSQL |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
11-143 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
NSQYSCPQRKYKYDVFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADLKGY |
| ProfileScan: PS50104 IPR000157
|
18-140 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
QRKYKYDVFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADL |
| HMMSmart: SM00255 IPR000157
|
22-140 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
KYDVFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADL |
| HMMPanther: PTHR11017 | 25-888 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | VFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADLKGYDIRERIESECIGELVNEISPKLCETSLSYLTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKVVENLKVSYDGLEREDQEIFLDIACFLRGRKQTEIKQILESCDFGADDGLRVLIDKSLVFISEYDTIQMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSNAKIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAKQKSEVGLEDEVHFVFPPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLP |
| HMMPanther: PTHR11017:SF20 | 25-888 | PTHR11017:SF20,SUBFAMILY NOT NAMED | VFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADLKGYDIRERIESECIGELVNEISPKLCETSLSYLTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKVVENLKVSYDGLEREDQEIFLDIACFLRGRKQTEIKQILESCDFGADDGLRVLIDKSLVFISEYDTIQMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSNAKIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAKQKSEVGLEDEVHFVFPPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLP |
| HMMPfam: PF01582 IPR000157
|
27-135 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
LSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALS |
| Gene3D: G3DSA:3.40.50.10140 | 28-130 | G3DSA:3.40.50.10140 | SFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRW |
| superfamily: SSF52540 | 159-401 | SSF52540 | NEISPKLCETSLSYLTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKV |
| Gene3D: G3DSA:3.40.50.300 | 173-319 | G3DSA:3.40.50.300 | LTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIR |
| HMMPfam: PF00931 IPR002182
|
184-431 | NB-ARC,NBS NB-ARC
|
KKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKVVENLKVSYDGLEREDQEIFLDIACFLRGRK |
| FPrintScan: PR00364 IPR000767
|
199-214 | DISEASERSIST Disease resistance protein
|
IVWIWGMGGVGKTTIA |
| FPrintScan: PR00364 IPR000767
|
273-287 | DISEASERSIST Disease resistance protein
|
RLRLKKVLVVLDNID |
| FPrintScan: PR00364 IPR000767
|
364-378 | DISEASERSIST Disease resistance protein
|
AEGLPLALKVWGSSL |
| superfamily: SSF46785 | 399-504 | SSF46785 | SKVVENLKVSYDGLEREDQEIFLDIACFLRGRKQTEIKQILESCDFGADDGLRVLIDKSLVFISEYDTIQMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSN |
| superfamily: SSF52058 | 468-897 | SSF52058,LRR | QMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSNAKIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAKQKSEVGLEDEVHFVFPPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLPEFPRQLDTI |
| Gene3D: G3DSA:3.80.10.10 | 506-800 | G3DSA:3.80.10.10 | KIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAK |
| HMMPfam: PF07725 IPR011713
|
582-600 | LRR_3 Leucine-rich repeat 3
|
LVHLDLQQSSLFHLWTGTK |
| Gene3D: G3DSA:3.80.10.10 | 816-944 | G3DSA:3.80.10.10 | PPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLPEFPRQLDTIYADWNNDSICNSLFQNISSFQHDICASDSLSLRVFTNEWKNIPRWFH |
| HMMPfam: PF12799 | 824-864 | LRR_4,Leucine Rich repeats (2 copies) | SLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLP |
| ProfileScan: PS51450 IPR001611
|
824-844 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLKTLNLSYCNLKDEGLPQDI |
| ProfileScan: PS51450 IPR001611
|
849-871 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLEVLNLRGNNFEHLPQSLTRLS |
| FPrintScan: PR00364 IPR000767
|
868-884 | DISEASERSIST Disease resistance protein
|
TRLSSLQSLDLLDCKSL |
| HMMPfam: PF13504 | 871-888 | LRR_7,Leucine rich repeat | SSLQSLDLLDCKSLTQLP |
| ProfileScan: PS51450 IPR001611
|
872-894 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLQSLDLLDCKSLTQLPEFPRQL |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Potato virus Y | Potato virus Y |
List of References
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