PRGDB00000052 (RY-1)
RY-1 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 16944810 (AJ300266) |
Gene Class | TNL |
Domain Type | LRR, LRR, NBS, LRR, LRR, TIR, Others |
Chromosome | 11 |
Gene Species | Solanum tuberosum subsp andigena |
DNA Sequence
ATGGCATCATCATCTTCTTCTTCTGAGAGTAATTCACAGTATTCATGTCCTCAACGGAAGTACAAGTACGATGTGTTTCTAAGTTTTAGAGATGATAAAAGGCTAGAGAATGGTGATTCCCTCTCGAAAGAACTAGTGAAAGCTATAAAAGAGTCTCAAGTTGCTGTAATCATCTTCTCAAAGAATTATGCTACGTCGAGGTGGTGCCTGAATGAAGTAGTGAAGATTATGGAATGCAAGGAAGAGAATGGACAATTAGTCATACCAGTCTTCTATGATGTGGATCCATCAGATGTTCGGAAGCAAACGAAGAGCTTTGCAGAAGCCTTTGCCGAACACGAATCGAGGTATAAGGATGATGTTGAAGGAATGCAGAAGGTGCAACGATGGAGGACTGCTCTAAGTGAAGCTGCAGATCTAAAAGGATATGATATCCGTGAAAGGATTGAATCAGAATGTATTGGGGAACTTGTTAATGAAATTTCGCCCAAATTATGCGAGACTTCTTTATCTTATTTGACAGATGTTGTGGGAATAGATGCTCATTTAAAGAAAGTCAACTCCCTTCTAGAGATGAAAATCGATGATGTTCGGATTGTGTGGATCTGGGGAATGGGGGGAGTTGGTAAAACGACAATAGCAAGAGCTATTTTTGATATACTCTCATCTAAATTTGATGGTGCTTGTTTCCTTCCGGACAATAAAGAAAACAAGTATGAAATACATTCTCTGCAAAGTATCCTTCTCTCTAAACTGGTAGGGGAAAAAGAAAATTGTGTGCATGATAAGGAGGACGGGAGGCACCTGATGGCTCGTAGACTTCGTTTGAAGAAAGTTCTAGTTGTGCTTGATAACATAGATCATGAAGACCAATTGAAATACCTAGCAGGGGATCTTGGTTGGTTTGGCAATGGCACCAGAATTATTGCAACAACGAGAGACAAGCATTTCATTCGGAAAAATGATGCCGTATATCCTGTGACTACACTACTTGAACATGATGCTGTTCAGTTGTTCAACCAATATGCTTTCAAAAATGAAGTTCCAGATAAGTGTTTCGAGGAGATAACGTTGGAGGTAGTAAGTCATGCTGAAGGCCTTCCTTTAGCCCTGAAAGTGTGGGGTTCTTCCTTACATAAGAAGGATATACATGTGTGGAGGAGTGCTGTTGATCGAATAAAGAGGAACCCTAGTTCAAAAGTTGTTGAAAACCTCAAAGTAAGTTATGATGGGTTGGAGCGCGAAGATCAAGAGATATTTCTAGATATTGCATGCTTCTTAAGAGGGAGAAAACAAACCGAGATCAAGCAAATTCTTGAGAGCTGTGATTTTGGAGCTGATGACGGATTGAGGGTGCTGATTGACAAGTCTCTTGTGTTCATCTCTGAATATGATACGATTCAAATGCATGACTTAATACAAGAGATGGGTAAATACATAGTGACAATGCAAAAGGATCGGGGAGAAGTCACTAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAAGGGACCAAGGCTATCGAAGCAATCTGGATACCAGAAATTCAAGACCTAAGCTTTAGAAAAAAGGCCATGAAAGATGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACCTGATGGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGCTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACTGGAACAAAGAAATTTCCTTTTCTACGGAGGCTAGATCTCAGCAGCTGTGCAAACCTGATGCGAACACCAGATTTCACGGATATGCCAAATTTGGAGTATTTGGGTCTGGAAGAGTGTAGTAATCTTAAAGAGGTTCATCATTCCCTGAGATGTTCCAAAAAACTCATTAAGTTAAATTTGAGAGATTGTAAAAACCTTGAGAGTTTTAGCTATGTTTGTTGGGAATCTCTTGAATGTCTACATCTACAAGGTTGCTCTAATTTAGAGAAATTTCCGAGGATCCGGGGAAAATTGAAGCCGGAGATAGAGATTCAAGTGCAACGCTCTGGGATAAGGAAACTACCATCAGCTATTATTCAGCACCAGTCTAGTCTTACAGAGCTAGATTTGAGTGGCATGAAAAACCTTGCAACACTTTCATGCAGCATTGGCGAGTTGAAAAGTTTGGTGATGCTAAAAGTGTCCTACTGCTCAAAACTCAAAAGCTTGCCAGAAGAGATAGGTGATTTAGAAAACTTGGAGATACTTAAGGCCGGATATACTCTAATCTCACAACCTCCGTCTTCCATCGTTCGCTTGAACAGGCTTAAATTTTTGACTTTTGCAAAACAAAAATCAGAAGTAGGCCTCGAAGATGAAGTGCACTTTGTCTTCCCTCCGGTGAATCAGGGATTATGCTCATTGAAAACTTTGAATCTCAGTTACTGCAATCTAAAAGACGAAGGACTTCCGCAAGACATCGGAAGCTTATCCTCTTTGGAAGTGTTGAATCTGAGGGGAAATAATTTTGAGCATTTGCCTCAAAGCTTGACCCGACTTAGTTCTCTTCAGTCCTTGGACTTATTAGATTGCAAGAGTCTTACACAGCTGCCGGAATTTCCACGGCAATTAGACACAATATATGCAGATTGGAACAATGATTCGATCTGTAATTCGTTGTTTCAAAATATCTCATCATTCCAGCATGACATCTGTGCTTCAGATTCCTTGTCACTAAGAGTGTTTACCAATGAGTGGAAAAATATCCCGAGATGGTTCCACCATCAGGGAAAAGATAAAAGTGTATCAGTCAAATTGCCTGAAAATTGGTATGTGTGCGATAACTTCTTGGGATTTGCTGTATGTTACTCTGGCTGCTTAATTGAAACCACAGCTCAATTCTTATGTGATGAGGGGATGCCGTGTATCACACAGAAACTTGCCTTACCCAAACATTCAGAAGAATTTCCAGAATCTGCTATTCATTTTTTCTTGGTACCTTCTGCTGGCTTATTGGATACATCTAAGGCAAACGGAAAAACACCAAATGATTATAGGCACATTATGTTATCTTTTTCGGAAGAGTTGAAGGAGTTTGGACTTCGTTTGTTGTATAGAGATGAATCTAAGCTTAAGGCCTTGTTTAAAATGACGGAAAATAATGATGAACCAACAGAATATTGCGTCGTGAAAAGGAGGGGTCAATATGATGAGGCCAGATGCTCCTCTTCTAAGAAACAAAGGTCACAGCTCTAA
Protein sequences
Name | Description | Sequence |
---|---|---|
resistance gene-like | resistance gene-like [Solanum tuberosum subsp. andigena]. | MASSSSSSESNSQYSCPQRKYKYDVFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADLKGYDIRERIESECIGELVNEISPKLCETSLSYLTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKVVENLKVSYDGLEREDQEIFLDIACFLRGRKQTEIKQILESCDFGADDGLRVLIDKSLVFISEYDTIQMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSNAKIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAKQKSEVGLEDEVHFVFPPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLPEFPRQLDTIYADWNNDSICNSLFQNISSFQHDICASDSLSLRVFTNEWKNIPRWFHHQGKDKSVSVKLPENWYVCDNFLGFAVCYSGCLIETTAQFLCDEGMPCITQKLALPKHSEEFPESAIHFFLVPSAGLLDTSKANGKTPNDYRHIMLSFSEELKEFGLRLLYRDESKLKALFKMTENNDEPTEYCVVKRRGQYDEARCSSSKKQRSQL |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52200 IPR000157
|
11-143 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
NSQYSCPQRKYKYDVFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADLKGY |
ProfileScan: PS50104 IPR000157
|
18-140 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
QRKYKYDVFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADL |
HMMSmart: SM00255 IPR000157
|
22-140 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
KYDVFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADL |
HMMPanther: PTHR11017 | 25-888 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | VFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADLKGYDIRERIESECIGELVNEISPKLCETSLSYLTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKVVENLKVSYDGLEREDQEIFLDIACFLRGRKQTEIKQILESCDFGADDGLRVLIDKSLVFISEYDTIQMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSNAKIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAKQKSEVGLEDEVHFVFPPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLP |
HMMPanther: PTHR11017:SF20 | 25-888 | PTHR11017:SF20,SUBFAMILY NOT NAMED | VFLSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALSEAADLKGYDIRERIESECIGELVNEISPKLCETSLSYLTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKVVENLKVSYDGLEREDQEIFLDIACFLRGRKQTEIKQILESCDFGADDGLRVLIDKSLVFISEYDTIQMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSNAKIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAKQKSEVGLEDEVHFVFPPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLP |
HMMPfam: PF01582 IPR000157
|
27-135 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
LSFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRWRTALS |
Gene3D: G3DSA:3.40.50.10140 | 28-130 | G3DSA:3.40.50.10140 | SFRDDKRLENGDSLSKELVKAIKESQVAVIIFSKNYATSRWCLNEVVKIMECKEENGQLVIPVFYDVDPSDVRKQTKSFAEAFAEHESRYKDDVEGMQKVQRW |
superfamily: SSF52540 | 159-401 | SSF52540 | NEISPKLCETSLSYLTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKV |
Gene3D: G3DSA:3.40.50.300 | 173-319 | G3DSA:3.40.50.300 | LTDVVGIDAHLKKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIR |
HMMPfam: PF00931 IPR002182
|
184-431 | NB-ARC,NBS NB-ARC
|
KKVNSLLEMKIDDVRIVWIWGMGGVGKTTIARAIFDILSSKFDGACFLPDNKENKYEIHSLQSILLSKLVGEKENCVHDKEDGRHLMARRLRLKKVLVVLDNIDHEDQLKYLAGDLGWFGNGTRIIATTRDKHFIRKNDAVYPVTTLLEHDAVQLFNQYAFKNEVPDKCFEEITLEVVSHAEGLPLALKVWGSSLHKKDIHVWRSAVDRIKRNPSSKVVENLKVSYDGLEREDQEIFLDIACFLRGRK |
FPrintScan: PR00364 IPR000767
|
199-214 | DISEASERSIST Disease resistance protein
|
IVWIWGMGGVGKTTIA |
FPrintScan: PR00364 IPR000767
|
273-287 | DISEASERSIST Disease resistance protein
|
RLRLKKVLVVLDNID |
FPrintScan: PR00364 IPR000767
|
364-378 | DISEASERSIST Disease resistance protein
|
AEGLPLALKVWGSSL |
superfamily: SSF46785 | 399-504 | SSF46785 | SKVVENLKVSYDGLEREDQEIFLDIACFLRGRKQTEIKQILESCDFGADDGLRVLIDKSLVFISEYDTIQMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSN |
superfamily: SSF52058 | 468-897 | SSF52058,LRR | QMHDLIQEMGKYIVTMQKDRGEVTRLWLTQDFEKFSNAKIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAKQKSEVGLEDEVHFVFPPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLPEFPRQLDTI |
Gene3D: G3DSA:3.80.10.10 | 506-800 | G3DSA:3.80.10.10 | KIQGTKAIEAIWIPEIQDLSFRKKAMKDVEKLRILYINGFHTPDGSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLDLSSCANLMRTPDFTDMPNLEYLGLEECSNLKEVHHSLRCSKKLIKLNLRDCKNLESFSYVCWESLECLHLQGCSNLEKFPRIRGKLKPEIEIQVQRSGIRKLPSAIIQHQSSLTELDLSGMKNLATLSCSIGELKSLVMLKVSYCSKLKSLPEEIGDLENLEILKAGYTLISQPPSSIVRLNRLKFLTFAK |
HMMPfam: PF07725 IPR011713
|
582-600 | LRR_3 Leucine-rich repeat 3
|
LVHLDLQQSSLFHLWTGTK |
Gene3D: G3DSA:3.80.10.10 | 816-944 | G3DSA:3.80.10.10 | PPVNQGLCSLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLPQSLTRLSSLQSLDLLDCKSLTQLPEFPRQLDTIYADWNNDSICNSLFQNISSFQHDICASDSLSLRVFTNEWKNIPRWFH |
HMMPfam: PF12799 | 824-864 | LRR_4,Leucine Rich repeats (2 copies) | SLKTLNLSYCNLKDEGLPQDIGSLSSLEVLNLRGNNFEHLP |
ProfileScan: PS51450 IPR001611
|
824-844 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLKTLNLSYCNLKDEGLPQDI |
ProfileScan: PS51450 IPR001611
|
849-871 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLEVLNLRGNNFEHLPQSLTRLS |
FPrintScan: PR00364 IPR000767
|
868-884 | DISEASERSIST Disease resistance protein
|
TRLSSLQSLDLLDCKSL |
HMMPfam: PF13504 | 871-888 | LRR_7,Leucine rich repeat | SSLQSLDLLDCKSLTQLP |
ProfileScan: PS51450 IPR001611
|
872-894 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLQSLDLLDCKSLTQLPEFPRQL |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Potato virus Y | Potato virus Y |
List of References
Sabina Vidal, Héctor Cabrera, Robert A Andersson, Anna Fredriksson, Jari P T Valkonen
Potato gene Y-1 is an N gene homolog that confers cell death upon infection with potato virus Y.
Mol. Plant Microbe Interact.: 2002, 15(7);717-27
PubMed:12118888
WorldCat.org
DOI
(P p)
List of Contributions
There has not been any contribution yet.