PRGDB00000053 (Sw-5)
Sw-5 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 15418708 (AY007366) |
Gene Class | CNL |
Domain Type | NBS, LRR, Others |
Chromosome | 9 |
Gene Species | Solanum lycopersicum |
DNA Sequence
ATGGCTGAAAATGAAATTGAGGAAATGTTAGAGCACCTGAGAAGGATCAAGAGTGGAGGTGATCTGGATTGGCTCGACATATTGCGAATTGAAGAACTTGAAATGGTGCTAAGAGTTTTTAGAACCTTTACAAAGTATCATGATGTTCTTTTGCCTGATTCCTTAGTCGAACTCACAAAGAGGGCCAAATTGACTGGGGAAATACTTCACCGGGTGTTGGGTAGGATTCCACATAAATGTAAAACTAACCTTAATCTGGAAAGGCTAGAATCACATTTGTTGGAATTCTTTCAAGGTAATACGGCAAGTTTAAGTCACAATTATGAGTTGAATGATTTTGATCTGTCGAAATATATGGATTGTCTGGAAAATTTTCTAAATGATGTACTGATGATGTTCTTGCAAAAGGATAGGTTCTTCCATTCCAGAGAACAACTTGCAAAACATCGATCAATAAAGGAACTGAAAATTGTTCAAAAGAAAATAAGATTTTTGAAATACATATATGCCACAGAGATAAATGGTTATGTCGACTATGAGAAGCAGGAATGTTTGGAGACTCGAATTCAGTTCATGACTAACACTGTGGGACAATATTGTTTGGCAGTATTAGATTATGTCACTGAGGGTAAACTTAATGAAGAAAATGACAACTTTAGTAAACCTCCTTACCTATTATCATTGATTGTGTTAGTGGAGCTGGAAATGAAGAAGATTTTTCATGGTGAAGTAAAGGCTTCAAAGTTTACTCAATCAAAAACTTTCAAGGACAAGAAATTACCAAAAGGATTTTCACATCATCTCCACAATCTGTTGATGTATCTCAGAAACAAAAAGCTCGAGAATTTTCCTAATAATATCGCTGCTCAAAATATTGATGTGGCAATAGAGTTCTTGTTGGTTTTCCTTGATGCTGATGTGTCAAATCATGTTATTAATGGTAACTGGTTGAAAGAGGTCTTGTTAAAGGTTGGAGCTATAGCGGGTGATATTCTATATGTAATTCAAAAGCTTCTTCCTAGATCAATAAACAAAGATGAAACTAGCAACATAAGTCTTTGCTCAATACAGATATTGGAGAAGACTAAAGATCTGAAGGCACAAGTTGAGACGTACTACAAATCCTTAAAATTTACTCCATCTCAGTTCCCCACCTTTGGTGGATTGAGCTTTCTGGATTCTCTTTTAAGGAAACTGAATGAGATGTCGACATCTAAGTCCGGATTAGGTTTCCTGATGAAACCTCTTTTAGGGAATTTGGAGAAAGAGCTATCATCTCTTACATCCATTTTAGAGAAGGAGCTCTCATCCATTTTCAGTGATGTCGTGCACCATGAACATAACATTCCTAAAGATCTTCAGAGACGTACCATCAATTTGGCATATGAGGCAGAGGTTGCTATTGATTCTATTCTTGCTCAGTATAATGCTTTTTTGCATATTTTTTGCTCACTTCCTACAATTGTAAAAGAGATCAAGCAAATTAATGTAGAGGTGACTGAGATGTGGTCAACGGACATTCCTCTTAATCCTCACTATGTGGCTGCTCCATTAAAACATCTGCCGGATCGACATAGCAATCTTGTAACTGATGAGGAGGTAGTGGGTTTTGAGAAACAAGCAGAAGAACTAATTGATTATCTGACTAGAGGTACAAATGAGCTAGACGTTGTCCCAATTGTAGGCATGGGAGGACAAGGGAAAACGACAATTGCTAGAAAGTTGTACAATAATGACATTATTGTTTCTCGCTTTGATGTTCGAGCATGGTGCATCATTTCTCAAACGTATAACCGGATAGAGTTATTACAAGATATTTTCAGTCAAGTTACAGGTTTCAACGACAATGGAGCTACGGTTGATGTTCTTGCCGACATGTTGAGGAGAAAATTAATGGGAAAGAGATATCTCATTGTATTGGATGATATGTGGGATTGTATGGTATGGGATGACTTAAGGCTTTCTTTTCCAGATGTTGGAATTAGAAGCAGAATAGTCGTAACAACTCGACTTGAAGAAGTGGGTAAGCAAGTCAAGTACCATACTGATCCTTATTCTCTTCCATTCCTCACAACAGAAGAGAGTTGCCAATTGTTGCAGAAAAAAGTGTTTCAAAAGGAAGATTGCCCGCTTGAACTACAAGATGTGAGTCAAGCAGTAGCAGAAAAATGCAAAGGACTGCCCCTAGTGGTTGTCTTGGTAGCTGGAATAATCAAAAAAAGGAAAATGGAAGAATCTTGGTGGAATGAGGTGAAAGATGCTTTATTTGACTATCTTGACAGTGAGTTCGAAGAATATAGTCTGGCGACTATGCAGTTGAGTTTTGATAACTTACCCCACTGTTTAAAGCCTTGTCTTCTTTATATGGGAATGTTTTCGGAGGACGCAAGAATTCCAGCATCTACATTGATAAGTTTATGGATTGCTGAAGGATTCGTGGAGAACACTGAATCTGGGAGATTAATGGAAGAGGAAGCTGAAGGTTACTTGATGGATCTCATTAGCAGTAACTTGGTAATGCTTTCAAAGAGAAGTTATAAGGGTAAAGTCAAATACTGTCAGGTTCATGATGTTGTGCATCACTTTTGCTTGGAAAAGAGTAGAGAAGCAAAGTTTATGCTTGCAGTGAAGGGTCAATGTATCCAGTTTCAACCTTCGGATTGGAAGGGAACTCGAGTGAGCTTCAGTTTTAGTGAAGAGCTTTCCAAGTTTGCATCTCTGGTCTCCAAAACACAGAAGCCTTTCCATCAACACTTGAGGTCATTGATAACGACCAATCGAGCAAAATCTATTGATGTGATTCTCTTCTGTCAGATTAGTGAATTGCGACTTCTTAAAGTCTTGGATTTGAGTTCTTATACTGTGGAGTTTTTGTCATTAGCTAAGTTCAAACCACTAAATCAGCTGAAGTACCTCGCAGTTAAGGCTGATAAATTCTATTTTGATCCAGGATCACATCTTCCCCATATAGAAACTTTCATTGTAAAGAATTTTTGTTATGGTATGGGGTTACCAGTGTCTTTTTGGGAAATGAAAAAATTAAGGCATGCTCATTTTGGTAATGCTGAATTTGATAAGCAGGGGCTCTTTGAAGGATCCTCTACATTGGAAAATTTGAGGATATTAAAGAATATTATTGGATTTGATGGGGTGGATGTGTTATCAAGGAGGTGTCCTAATCTTCAACAACTTCAAATCACATATTTTGGAAATGATGAAGAGCCTTTTACTCCCAAACTGGAGAATCTTACCCAGCTTCAACAACTTCAACTTTCCTTTGCGCGTCCCCACACTCTATCCGGGTTACAGTTGCCTTCAAATTTAAATAAGTTGGTACTTGAAGGAATTCATATAGAAAGTGTTATTTCCTTCATTGCGGGACTACCAAGCCTGGAATATCTCCAATTACAGGATGTGTGTTTTCCTCAATCAGAAGAGTGGTGCCTTGGAGATATCACGTTCCCTAAACTTAAGTTGTTGAAACTGGTGAACTTACCGATCTCAAGGTGGGATGTCTCAGAGGAATCATTTCCGTTGCTTGAAACATTCGTTATAAAGAAGTGCGATGACCTAGAGGAGATCCCACTTAGCTTTGTTGATATTCCAACATTGGAACAGATTAAATTGATTGGGTCCTGGAAAGTATCTCTGGAGGATTCAGCTGTGAGAATGAAGGAAGAAATCAAAGAGATTGAAGGATGTGATCGTTTACACCTCGTCAAACAACGCTATGATTGA
Protein sequences
Name | Description | Sequence |
---|---|---|
tospovirus resistance protein A | tospovirus resistance protein A [Lycopersicon esculentum]. | MAENEIEEMLEHLRRIKSGGDLDWLDILRIEELEMVLRVFRTFTKYHDVLLPDSLVELTKRAKLTGEILHRVLGRIPHKCKTNLNLERLESHLLEFFQGNTASLSHNYELNDFDLSKYMDCLENFLNDVLMMFLQKDRFFHSREQLAKHRSIKELKIVQKKIRFLKYIYATEINGYVDYEKQECLETRIQFMTNTVGQYCLAVLDYVTEGKLNEENDNFSKPPYLLSLIVLVELEMKKIFHGEVKASKFTQSKTFKDKKLPKGFSHHLHNLLMYLRNKKLENFPNNIAAQNIDVAIEFLLVFLDADVSNHVINGNWLKEVLLKVGAIAGDILYVIQKLLPRSINKDETSNISLCSIQILEKTKDLKAQVETYYKSLKFTPSQFPTFGGLSFLDSLLRKLNEMSTSKSGLGFLMKPLLGNLEKELSSLTSILEKELSSIFSDVVHHEHNIPKDLQRRTINLAYEAEVAIDSILAQYNAFLHIFCSLPTIVKEIKQINVEVTEMWSTDIPLNPHYVAAPLKHLPDRHSNLVTDEEVVGFEKQAEELIDYLTRGTNELDVVPIVGMGGQGKTTIARKLYNNDIIVSRFDVRAWCIISQTYNRIELLQDIFSQVTGFNDNGATVDVLADMLRRKLMGKRYLIVLDDMWDCMVWDDLRLSFPDVGIRSRIVVTTRLEEVGKQVKYHTDPYSLPFLTTEESCQLLQKKVFQKEDCPLELQDVSQAVAEKCKGLPLVVVLVAGIIKKRKMEESWWNEVKDALFDYLDSEFEEYSLATMQLSFDNLPHCLKPCLLYMGMFSEDARIPASTLISLWIAEGFVENTESGRLMEEEAEGYLMDLISSNLVMLSKRSYKGKVKYCQVHDVVHHFCLEKSREAKFMLAVKGQCIQFQPSDWKGTRVSFSFSEELSKFASLVSKTQKPFHQHLRSLITTNRAKSIDVILFCQISELRLLKVLDLSSYTVEFLSLAKFKPLNQLKYLAVKADKFYFDPGSHLPHIETFIVKNFCYGMGLPVSFWEMKKLRHAHFGNAEFDKQGLFEGSSTLENLRILKNIIGFDGVDVLSRRCPNLQQLQITYFGNDEEPFTPKLENLTQLQQLQLSFARPHTLSGLQLPSNLNKLVLEGIHIESVISFIAGLPSLEYLQLQDVCFPQSEEWCLGDITFPKLKLLKLVNLPISRWDVSEESFPLLETFVIKKCDDLEEIPLSFVDIPTLEQIKLIGSWKVSLEDSAVRMKEEIKEIEGCDRLHLVKQRYD |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR11017 | 383-873 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FPTFGGLSFLDSLLRKLNEMSTSKSGLGFLMKPLLGNLEKELSSLTSILEKELSSIFSDVVHHEHNIPKDLQRRTINLAYEAEVAIDSILAQYNAFLHIFCSLPTIVKEIKQINVEVTEMWSTDIPLNPHYVAAPLKHLPDRHSNLVTDEEVVGFEKQAEELIDYLTRGTNELDVVPIVGMGGQGKTTIARKLYNNDIIVSRFDVRAWCIISQTYNRIELLQDIFSQVTGFNDNGATVDVLADMLRRKLMGKRYLIVLDDMWDCMVWDDLRLSFPDVGIRSRIVVTTRLEEVGKQVKYHTDPYSLPFLTTEESCQLLQKKVFQKEDCPLELQDVSQAVAEKCKGLPLVVVLVAGIIKKRKMEESWWNEVKDALFDYLDSEFEEYSLATMQLSFDNLPHCLKPCLLYMGMFSEDARIPASTLISLWIAEGFVENTESGRLMEEEAEGYLMDLISSNLVMLSKRSYKGKVKYCQVHDVVHHFCLEKSREAKFM |
HMMPanther: PTHR11017:SF126 | 383-873 | PTHR11017:SF126,OS11G0237600 PROTEIN | FPTFGGLSFLDSLLRKLNEMSTSKSGLGFLMKPLLGNLEKELSSLTSILEKELSSIFSDVVHHEHNIPKDLQRRTINLAYEAEVAIDSILAQYNAFLHIFCSLPTIVKEIKQINVEVTEMWSTDIPLNPHYVAAPLKHLPDRHSNLVTDEEVVGFEKQAEELIDYLTRGTNELDVVPIVGMGGQGKTTIARKLYNNDIIVSRFDVRAWCIISQTYNRIELLQDIFSQVTGFNDNGATVDVLADMLRRKLMGKRYLIVLDDMWDCMVWDDLRLSFPDVGIRSRIVVTTRLEEVGKQVKYHTDPYSLPFLTTEESCQLLQKKVFQKEDCPLELQDVSQAVAEKCKGLPLVVVLVAGIIKKRKMEESWWNEVKDALFDYLDSEFEEYSLATMQLSFDNLPHCLKPCLLYMGMFSEDARIPASTLISLWIAEGFVENTESGRLMEEEAEGYLMDLISSNLVMLSKRSYKGKVKYCQVHDVVHHFCLEKSREAKFM |
superfamily: SSF52540 | 516-763 | SSF52540 | APLKHLPDRHSNLVTDEEVVGFEKQAEELIDYLTRGTNELDVVPIVGMGGQGKTTIARKLYNNDIIVSRFDVRAWCIISQTYNRIELLQDIFSQVTGFNDNGATVDVLADMLRRKLMGKRYLIVLDDMWDCMVWDDLRLSFPDVGIRSRIVVTTRLEEVGKQVKYHTDPYSLPFLTTEESCQLLQKKVFQKEDCPLELQDVSQAVAEKCKGLPLVVVLVAGIIKKRKMEESWWNEVKDALFDYLDSEF |
Gene3D: G3DSA:3.40.50.300 | 529-642 | G3DSA:3.40.50.300 | VTDEEVVGFEKQAEELIDYLTRGTNELDVVPIVGMGGQGKTTIARKLYNNDIIVSRFDVRAWCIISQTYNRIELLQDIFSQVTGFNDNGATVDVLADMLRRKLMGKRYLIVLDD |
HMMPfam: PF00931 IPR002182
|
538-816 | NB-ARC,NBS NB-ARC
|
EKQAEELIDYLTRGTNELDVVPIVGMGGQGKTTIARKLYNNDIIVSRFDVRAWCIISQTYNRIELLQDIFSQVTGFNDNGATVDVLADMLRRKLMGKRYLIVLDDMWDCMVWDDLRLSFPDVGIRSRIVVTTRLEEVGKQVKYHTDPYSLPFLTTEESCQLLQKKVFQKEDCPLELQDVSQAVAEKCKGLPLVVVLVAGIIKKRKMEESWWNEVKDALFDYLDSEFEEYSLATMQLSFDNLPHCLKPCLLYMGMFSEDARIPASTLISLWIAEGFVENT |
FPrintScan: PR00364 IPR000767
|
557-572 | DISEASERSIST Disease resistance protein
|
VVPIVGMGGQGKTTIA |
FPrintScan: PR00364 IPR000767
|
630-644 | DISEASERSIST Disease resistance protein
|
KLMGKRYLIVLDDMW |
FPrintScan: PR00364 IPR000767
|
724-738 | DISEASERSIST Disease resistance protein
|
CKGLPLVVVLVAGII |
superfamily: SSF52058 | 854-1211 | SSF52058,LRR | QVHDVVHHFCLEKSREAKFMLAVKGQCIQFQPSDWKGTRVSFSFSEELSKFASLVSKTQKPFHQHLRSLITTNRAKSIDVILFCQISELRLLKVLDLSSYTVEFLSLAKFKPLNQLKYLAVKADKFYFDPGSHLPHIETFIVKNFCYGMGLPVSFWEMKKLRHAHFGNAEFDKQGLFEGSSTLENLRILKNIIGFDGVDVLSRRCPNLQQLQITYFGNDEEPFTPKLENLTQLQQLQLSFARPHTLSGLQLPSNLNKLVLEGIHIESVISFIAGLPSLEYLQLQDVCFPQSEEWCLGDITFPKLKLLKLVNLPISRWDVSEESFPLLETFVIKKCDDLEEIPLSFVDIPTLEQIKLIG |
Gene3D: G3DSA:3.80.10.10 | 926-1084 | G3DSA:3.80.10.10 | NRAKSIDVILFCQISELRLLKVLDLSSYTVEFLSLAKFKPLNQLKYLAVKADKFYFDPGSHLPHIETFIVKNFCYGMGLPVSFWEMKKLRHAHFGNAEFDKQGLFEGSSTLENLRILKNIIGFDGVDVLSRRCPNLQQLQITYFGNDEEPFTPKLENLT |
FPrintScan: PR00364 IPR000767
|
940-956 | DISEASERSIST Disease resistance protein
|
SELRLLKVLDLSSYTVE |
Gene3D: G3DSA:3.80.10.10 | 1085-1140 | G3DSA:3.80.10.10 | QLQQLQLSFARPHTLSGLQLPSNLNKLVLEGIHIESVISFIAGLPSLEYLQLQDVC |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Tomato Spotted Wilt | Tomato spotted wilt virus |
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