PRGDB00000054 (Tm-2a)

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Tm-2a
Gene Type Reference_R-Genes,_manually_curated
GenBank 33330975 (AF536201)
Gene Class CNL
Domain Type NBS, LRR, LRR, Others
Chromosome 9
Gene Species Solanum lycopersicum

Comment?

Lycopersicon esculentum ToMV-resistance locus, Tm-2^2 resistance allele, complete cds.

DNA Sequence

ATGGCTGAAATTCTTCTTACATCAGTAATCAATAAATCTGTAGAAATAGCTGGAAATTTACTGATTCAAGAAGGAAAGCGTTTATATTGGTTGAAAGAGGATATCGATTGGCTCCAGAGAGAAATGAGACACATTCGATCTTATGTTGACAACGCAAAGGCCAAGGAAGCTGGAGGTGATTCAAGGGTCAAAAACTTATTGAAAGATATTCAAGAATTGGCAGGTGATGTGGAGGATCTCTTAGATGACTTCCTTCCAAAAATTCAACAATCCAATAAGTTCAATTATTGCCTTAAGAGGAGTTCTTTTGCAGATGAGTTTGCTATGGAGATTGAGAAGATAAAGAGAAGGGTTGTTGACATTGACCGAATAAGGAAAACTTACAACATCATAGATACAGATAACAATAATGATGATTGTGTTCTGCTGGATCGGAGAAGATTATTCCTACATGCTGATGAAACAGAGATCATCGGTTTGGATGATGACTTCAATATGCTACAAGCCAAATTACTTAATCAAGATTTGCATTATGGAGTTGTTTCCATAGTTGGCATGCCCGGTCTGGGGAAAACAACTCTTGCCAAGAAACTTTATAGGCTCATTCGTGATCAATTTGAGTGTTCTGGACTGGTCTACGTTTCACAACAGCCAAGAGCGAGTGAAATCTTACTTGACATTGCCAAACAAATTGGACTGACGGAACAGAAAATGAAGGAAAATTTGGAGGACAACCTGCGATCACTCTTGAAAATAAAAAGGTATGTTATCCTCCTAGATGACATTTGGGATGTGGAAATTTGGGATGATCTGAAACTTGTCCTTCCTGAATGTGATTCAAAAGTCGGCAGTAGAATGATAATCACGTCTCGAAATAGTAATGTAGGCAGATACATAGGAGGGGAATCCTCCCTCCATGCATTGCAACCCCTAGAATCCGAGAAAAGCTTTGAACTCTTTACCAAGAAAATCTTTAATTTTGATGATAATAATAGTTGGGCCAATGCTTCACCTGACTTGGTGAATATTGGTAGAAATATAGTTGGGAGATGTGGAGGTATACCGCTAGCCATAGTGGTGACTGCAGGCATGTTAAGGGCAAGAGAAAGAACAGAACATGCGTGGAACAGAGTACTTGAGAGTATGGGCCATAAAGTTCAAGATGGATGTGCTAAGGTATTGGCTCTCAGTTACAATGATTTACCTATTGCCTCAAGGCCATGTTTCTTGTACTTTGGCCTTTACCCCGAGGACCATGAAATTCGTGCTTTTGATTTGATAAATATGTGGATTGCTGAGAAGTTTATAGTAGTAAATAGTGGTAATAGGCGAGAGGCTGAGGATTTGGCGGAGGACGTCCTAAATGATTTGGTTTCTAGAAACTTGATTCAACTTGCCAAAAGGACATATAATGGAAGAATTTCAAGTTGTCGCATACATGACTTGTTACATAGTTTGTGTGTGGACTTGGCTAAGGAAAGTAACTTCTTTCACACCGCGCATGATGCATTTGGTGATCCCGGCAATGTTGCTAGGCTCCGAAGGATTACATTCTACTCTGACAATGTCATGATTGAGTTCTTCCGTTCAAATCCTAAGCTTGAGAAGCTTCGTGTACTTTTCTGTTTCGCAAAAGACCCTTCCATATTTTCTCATATGGCTTATTTTGACTTCAAATTGTTGCACACATTGGTTGTAGTCATGTCTCAAAGTTTTCAAGCATATGTCACTATCCCAAGCAAATTTGGGAACATGACTTGCTTACGCTATCTGAGATTGGAGGGGAATATTTGTGGAAAACTGCCAAATAGTATTGTCAAGCTCACACGTCTAGAGACCATAGACATTGATCGACGTAGCCTCATTCAACCTCCTTCTGGTGTTTGGGAGTCTAAACATTTGAGACATCTTTGTTATAGAGATTATGGACAAGCATGTAACAGTTGCTTTTCTATAAGCTCATTTTACCCAAATATTTACTCATTGCATCCTAACAATCTACAAACCTTGATGTGGATACCTGATAAATTTTTTGAACCGAGGTTGTTGCACCGATTGATCAATTTAAGAAAACTGGGTATACTGGGAGTGTCCAATTCTACCGTTAAGATGTTATCAATATTTAGCCCTGTGCTTAAGGCGCTGGAGGTTCTGAAGCTCAGTTTTTCCAGTGACCCGAGTGAACAAATAAAGTTGTCATCGTATCCACATATTGCTAAGTTGCATTTGAATGTTAACAGAACAATGGCCTTGAACTCTCAATCATTTCCTCCAAATCTCATCAAGCTTACTCTAGCCTACTTTAGTGTAGACCGTTATATACTGGCAGTACTTAAGACATTTCCCAAATTAAGAAAACTTAAAATGTTCATCTGCAAGTATAATGAAGAAAAGATGGATCTCTCGGGCGAGGCAAATGGTTATAGCTTTCCGCAACTTGAAGTTTTGCATATTCATAGCCCGAATGGGTTGTCTGAAGTAACGTGCACGGATGATGTCAGTATGCCCAAATTGAAAAAGCTGTTACTTACAGGATTCCATTGCCGAATCAGTTTATCGGAACGGCTTAAAAAGCTGAGTAAATGA


Protein sequences

Name Description Sequence
Tm-2^2 ToMV resistance protein Tm-2^2 ToMV resistance protein [Lycopersicon esculentum].

MAEILLTSVINKSVEIAGNLLIQEGKRLYWLKEDIDWLQREMRHIRSYVDNAKAKEAGGDSRVKNLLKDIQELAGDVEDLLDDFLPKIQQSNKFNYCLKRSSFADEFAMEIEKIKRRVVDIDRIRKTYNIIDTDNNNDDCVLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVILLDDIWDVEIWDDLKLVLPECDSKVGSRMIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHEIRAFDLINMWIAEKFIVVNSGNRREAEDLAEDVLNDLVSRNLIQLAKRTYNGRISSCRIHDLLHSLCVDLAKESNFFHTAHDAFGDPGNVARLRRITFYSDNVMIEFFRSNPKLEKLRVLFCFAKDPSIFSHMAYFDFKLLHTLVVVMSQSFQAYVTIPSKFGNMTCLRYLRLEGNICGKLPNSIVKLTRLETIDIDRRSLIQPPSGVWESKHLRHLCYRDYGQACNSCFSISSFYPNIYSLHPNNLQTLMWIPDKFFEPRLLHRLINLRKLGILGVSNSTVKMLSIFSPVLKALEVLKLSFSSDPSEQIKLSSYPHIAKLHLNVNRTMALNSQSFPPNLIKLTLAYFSVDRYILAVLKTFPKLRKLKMFICKYNEEKMDLSGEANGYSFPQLEVLHIHSPNGLSEVTCTDDVSMPKLKKLLLTGFHCRISLSERLKKLSK

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF126
6-496 PTHR11017:SF126,OS11G0237600 PROTEIN

LTSVINKSVEIAGNLLIQEGKRLYWLKEDIDWLQREMRHIRSYVDNAKAKEAGGDSRVKNLLKDIQELAGDVEDLLDDFLPKIQQSNKFNYCLKRSSFADEFAMEIEKIKRRVVDIDRIRKTYNIIDTDNNNDDCVLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVILLDDIWDVEIWDDLKLVLPECDSKVGSRMIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHEIRAFDLINMWIAEKFIVVNSGNRREAEDLAEDVLNDLVSRNLIQLAKRTYNGRISSCRIHDLLHSLCVDLAKESNF

HMMPanther: PTHR11017
6-496 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LTSVINKSVEIAGNLLIQEGKRLYWLKEDIDWLQREMRHIRSYVDNAKAKEAGGDSRVKNLLKDIQELAGDVEDLLDDFLPKIQQSNKFNYCLKRSSFADEFAMEIEKIKRRVVDIDRIRKTYNIIDTDNNNDDCVLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVILLDDIWDVEIWDDLKLVLPECDSKVGSRMIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHEIRAFDLINMWIAEKFIVVNSGNRREAEDLAEDVLNDLVSRNLIQLAKRTYNGRISSCRIHDLLHSLCVDLAKESNF

superfamily: SSF52540
140-390 SSF52540

CVLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVILLDDIWDVEIWDDLKLVLPECDSKVGSRMIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGC

HMMPfam: PF00931
IPR002182
162-439 NB-ARC,NBS
NB-ARC

DDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVILLDDIWDVEIWDDLKLVLPECDSKVGSRMIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHEIRAFDLINMWIAEKFIVVN

Gene3D: G3DSA:3.40.50.300
167-293 G3DSA:3.40.50.300

LQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVILLDDIWDVEIWDDLKLVLPECDSKVGSRMIITSRNS

HMMSmart: SM00382
IPR003593
177-317 AAA,NBS
AAA+ ATPase domain

HYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVILLDDIWDVEIWDDLKLVLPECDSKVGSRMIITSRNSNVGRYIGGESSLHALQPLESEKSF

FPrintScan: PR00364
IPR000767
180-195 DISEASERSIST
Disease resistance protein

VVSIVGMPGLGKTTLA

FPrintScan: PR00364
IPR000767
249-263 DISEASERSIST
Disease resistance protein

LLKIKRYVILLDDIW

FPrintScan: PR00364
IPR000767
351-365 DISEASERSIST
Disease resistance protein

CGGIPLAIVVTAGML

superfamily: SSF52058
478-845 SSF52058,LRR

RIHDLLHSLCVDLAKESNFFHTAHDAFGDPGNVARLRRITFYSDNVMIEFFRSNPKLEKLRVLFCFAKDPSIFSHMAYFDFKLLHTLVVVMSQSFQAYVTIPSKFGNMTCLRYLRLEGNICGKLPNSIVKLTRLETIDIDRRSLIQPPSGVWESKHLRHLCYRDYGQACNSCFSISSFYPNIYSLHPNNLQTLMWIPDKFFEPRLLHRLINLRKLGILGVSNSTVKMLSIFSPVLKALEVLKLSFSSDPSEQIKLSSYPHIAKLHLNVNRTMALNSQSFPPNLIKLTLAYFSVDRYILAVLKTFPKLRKLKMFICKYNEEKMDLSGEANGYSFPQLEVLHIHSPNGLSEVTCTDDVSMPKLKKLLLTG

Gene3D: G3DSA:3.80.10.10
523-631 G3DSA:3.80.10.10

VMIEFFRSNPKLEKLRVLFCFAKDPSIFSHMAYFDFKLLHTLVVVMSQSFQAYVTIPSKFGNMTCLRYLRLEGNICGKLPNSIVKLTRLETIDIDRRSLIQPPSGVWES

FPrintScan: PR00364
IPR000767
606-622 DISEASERSIST
Disease resistance protein

VKLTRLETIDIDRRSLI

Gene3D: G3DSA:3.80.10.10
687-845 G3DSA:3.80.10.10

INLRKLGILGVSNSTVKMLSIFSPVLKALEVLKLSFSSDPSEQIKLSSYPHIAKLHLNVNRTMALNSQSFPPNLIKLTLAYFSVDRYILAVLKTFPKLRKLKMFICKYNEEKMDLSGEANGYSFPQLEVLHIHSPNGLSEVTCTDDVSMPKLKKLLLTG


Diseases

Disease Pathogen Avirulence gene
Tobacco Mosaic Virus Tomato mosaic virus PRGAV00000040




List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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