PRGDB00000057 (Tm-2)
| Tm-2 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 33621254 (AF536200) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, LRR, Others |
| Chromosome | 7 |
| Gene Species | Solanum lycopersicum |
DNA Sequence
ATGGCTGAAATTCTTCTTACATCAGTAATCAATAAATCTGTAGAAATAGCTGGAAATTTACTGATTCAAGAAGGAAAGCGTTTATATTGGTTGAAAGAGGATATCGATTGGCTCCAGAGAGAAATGAGACACATTCGATCTTATGTTGACAACGCAAAGGCCAAGGAAGCTGGAGGTGATTCAAGGGTCAAAAACTTATTGAAAGATATTCAAGAATTGGCAGGTGATGTGGAGGATCTCTTAGATGACTTCCTTCCAAAAATTCAACAATCCAATAAGTTCAATTATTGCCTTAAGAGGAGTTCTTTTGCGGATGAGTTTGCTATGGAGATTGAGAAGATAAAGAGAAGGGTTGTTGACATTGACCGAATAAGGAAAACTTACAACATCATAGATACAGATAACAATAATGATGATTGTGTTCTGCTGGATCGGAGAAGATTATTCCTACATGCTGATGAAACAGAGATCATCGGTTTGGATGATGACTTCAATATGCTACAAGCCAAATTACTTAATCAAGATTTGCATTATGGAGTTGTTTCCATAGTTGGCATGCCCGGTCTGGGGAAAACAACTCTTGCCAAGAAACTTTATAGGCTCATTCGTGATCAATTTGAGTGTTCTGGACTGGTCTACGTTTCACAACAGCCAAGAGCGAGTGAAATCTTACTTGACATTGCCAAACAAATTGGACTGACGGAACAGAAAATGAAGGAAAATTTGGAGGACAACCTGCGATCACTCTTGAAAATAAAAAGGTATGTTTTCCTCCTAGATGACATTTGGGATGTGGAAATTTGGGATGATCTGAAACTTGTCCTTCCTGAATGTGATTCAAAAGTCGGCAGTAGAATTATAATCACGTCTCGAAATAGTAATGTAGGCAGATACATAGGAGGGGAATCCTCCCTCCATGCATTGCAACCCCTAGAATCCGAGAAAAGCTTTGAACTCTTTACCAAGAAAATCTTTAATTTTGATGATAATAATAGTTGGGCCAATGCTTCACCTGACTTGGTGAATATTGGTAGAAATATAGTTGGGAGATGTGGAGGTATACCGCTAGCCATAGTGGTGACTGCAGGCATGTTAAGGGCAAGAGAAAGAACAGAACATGCGTGGAACAGAGTACTTGAGAGTATGGGCCATAAAGTTCAAGATGGATGTGCTAAGGTATTGGCTCTCAGTTACAATGATTTACCTATTGCCTCAAGGCCATGTTTCTTGTACTTTGGCCTTTACCCCGAGGACCATGAAATTCGTGCTTTTGATTTGATAAATATGTGGATTGCTGAGAAGTTTATAGTAGTAAATAGTGGTAATAGGCGAGAGGCTGAGGATTTGGCGGAGGACGTCCTAAATGATTTGGTTTCTAGAAACTTGATTCAACTTGCCAAAAGGACATATAATGGAAGAATTTCAAGTTGTCGCATACATGACTTGTTACATAGTTTGTGTGTGGACTTGGCTAAGGAAAGTAACTTCTTTCACACCGCGCATGATGCATTTGGTGATCCCGGCAATGTTGCTAGGCTCCGAAGGATTACATTCTACTCTGACAATGTCATGATTGAGTTCTTCCGTTCAAATCCTAAGCTTGAGAAGCTTCGTGTACTTTTCTGTTTCGCAAAAGACCCTTCCATATTTTCTCATATGGCTTATTTTGACTTCAAATTGTTGCACACATTGGTTGTAGTCATGTCTCAAAGTTTTCAAGCATATGTCACTATCCCAAGCAAATTTGGGAACATGACTTGCTTACGCTATCTGAGATTGGAGGGGAATATTTGTGGAAAACTGCCAAATAGTATTGTCAAGCTCACACGTCTAGAGACCATAGACATTGATCGACGTAGCCTCATTCAACCTCCTTCTGGTGTTTGGGAGTCTAAACATTTGAGACATCTTTGTTATAGAGATTATGGACAAGCATGTAACAGTTGCTTTTCTATAAGCTCATTTTACCCAAATATTTACTCATTGCATCCTAACAATCTACAAACCTTGATGTGGATACCTGATAAATTTTTTGAACCGAGGTTGTTGCACCGATTGATCAATTTAAGAAAACTGGGTATACTGGGAGTGTCCAATTCTACCGTTAAGATGTTATCAATATTTAGCCCTGTGCTCAAGGCGCTGGAGGTTCTGAAGCTCAGTTTTTCCAGTGACCCGAGTGAACAAATAAAGTTGTCATCGTATCCACATATTGCTAAGTTGCATTTGAATGTTAACAGAACAATGGCCTTGAACTCTCAATCATTTCCTCCAAATCTCATCAAGCTTACTCTAGCCAACTTTACGGTAGACCGTTATATACTGGCAGTACTTAAGACATTTCCCAAATTAAGAAAACTTAAAATGTTCATCTGCAAGTATAATGAAGAAAAGATGGATCTCTCGGGCGAGGCAAATGGTTATAGCTTTCCGCAACTTGAAGTTTTGCATATTCATAGCCCGAATGGGTTGTCTGAAGTAACGTGCACGGATGATGTCAGTATGCCCAAATTGAAAAAGCTGTTACTTACAGGATTCCATTGCCGAATCAGTTTATCGGAACGGCTTAAAAAGCTGAGTAAATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Tm-2 ToMV resistance protein | Tm-2 ToMV resistance protein [Lycopersicon esculentum]. | MAEILLTSVINKSVEIAGNLLIQEGKRLYWLKEDIDWLQREMRHIRSYVDNAKAKEAGGDSRVKNLLKDIQELAGDVEDLLDDFLPKIQQSNKFNYCLKRSSFADEFAMEIEKIKRRVVDIDRIRKTYNIIDTDNNNDDCVLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVFLLDDIWDVEIWDDLKLVLPECDSKVGSRIIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHEIRAFDLINMWIAEKFIVVNSGNRREAEDLAEDVLNDLVSRNLIQLAKRTYNGRISSCRIHDLLHSLCVDLAKESNFFHTAHDAFGDPGNVARLRRITFYSDNVMIEFFRSNPKLEKLRVLFCFAKDPSIFSHMAYFDFKLLHTLVVVMSQSFQAYVTIPSKFGNMTCLRYLRLEGNICGKLPNSIVKLTRLETIDIDRRSLIQPPSGVWESKHLRHLCYRDYGQACNSCFSISSFYPNIYSLHPNNLQTLMWIPDKFFEPRLLHRLINLRKLGILGVSNSTVKMLSIFSPVLKALEVLKLSFSSDPSEQIKLSSYPHIAKLHLNVNRTMALNSQSFPPNLIKLTLANFTVDRYILAVLKTFPKLRKLKMFICKYNEEKMDLSGEANGYSFPQLEVLHIHSPNGLSEVTCTDDVSMPKLKKLLLTGFHCRISLSERLKKLSK |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR11017 | 6-496 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LTSVINKSVEIAGNLLIQEGKRLYWLKEDIDWLQREMRHIRSYVDNAKAKEAGGDSRVKNLLKDIQELAGDVEDLLDDFLPKIQQSNKFNYCLKRSSFADEFAMEIEKIKRRVVDIDRIRKTYNIIDTDNNNDDCVLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVFLLDDIWDVEIWDDLKLVLPECDSKVGSRIIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHEIRAFDLINMWIAEKFIVVNSGNRREAEDLAEDVLNDLVSRNLIQLAKRTYNGRISSCRIHDLLHSLCVDLAKESNF |
| HMMPanther: PTHR11017:SF126 | 6-496 | PTHR11017:SF126,OS11G0237600 PROTEIN | LTSVINKSVEIAGNLLIQEGKRLYWLKEDIDWLQREMRHIRSYVDNAKAKEAGGDSRVKNLLKDIQELAGDVEDLLDDFLPKIQQSNKFNYCLKRSSFADEFAMEIEKIKRRVVDIDRIRKTYNIIDTDNNNDDCVLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVFLLDDIWDVEIWDDLKLVLPECDSKVGSRIIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHEIRAFDLINMWIAEKFIVVNSGNRREAEDLAEDVLNDLVSRNLIQLAKRTYNGRISSCRIHDLLHSLCVDLAKESNF |
| superfamily: SSF52540 | 140-390 | SSF52540 | CVLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVFLLDDIWDVEIWDDLKLVLPECDSKVGSRIIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGC |
| HMMPfam: PF00931 IPR002182
|
162-439 | NB-ARC,NBS NB-ARC
|
DDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVFLLDDIWDVEIWDDLKLVLPECDSKVGSRIIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGRCGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHEIRAFDLINMWIAEKFIVVN |
| Gene3D: G3DSA:3.40.50.300 | 167-294 | G3DSA:3.40.50.300 | LQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVFLLDDIWDVEIWDDLKLVLPECDSKVGSRIIITSRNSN |
| HMMSmart: SM00382 IPR003593
|
177-317 | AAA,NBS AAA+ ATPase domain
|
HYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSGLVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVFLLDDIWDVEIWDDLKLVLPECDSKVGSRIIITSRNSNVGRYIGGESSLHALQPLESEKSF |
| FPrintScan: PR00364 IPR000767
|
180-195 | DISEASERSIST Disease resistance protein
|
VVSIVGMPGLGKTTLA |
| FPrintScan: PR00364 IPR000767
|
249-263 | DISEASERSIST Disease resistance protein
|
LLKIKRYVFLLDDIW |
| FPrintScan: PR00364 IPR000767
|
351-365 | DISEASERSIST Disease resistance protein
|
CGGIPLAIVVTAGML |
| superfamily: SSF52058 | 478-845 | SSF52058,LRR | RIHDLLHSLCVDLAKESNFFHTAHDAFGDPGNVARLRRITFYSDNVMIEFFRSNPKLEKLRVLFCFAKDPSIFSHMAYFDFKLLHTLVVVMSQSFQAYVTIPSKFGNMTCLRYLRLEGNICGKLPNSIVKLTRLETIDIDRRSLIQPPSGVWESKHLRHLCYRDYGQACNSCFSISSFYPNIYSLHPNNLQTLMWIPDKFFEPRLLHRLINLRKLGILGVSNSTVKMLSIFSPVLKALEVLKLSFSSDPSEQIKLSSYPHIAKLHLNVNRTMALNSQSFPPNLIKLTLANFTVDRYILAVLKTFPKLRKLKMFICKYNEEKMDLSGEANGYSFPQLEVLHIHSPNGLSEVTCTDDVSMPKLKKLLLTG |
| Gene3D: G3DSA:3.80.10.10 | 523-631 | G3DSA:3.80.10.10 | VMIEFFRSNPKLEKLRVLFCFAKDPSIFSHMAYFDFKLLHTLVVVMSQSFQAYVTIPSKFGNMTCLRYLRLEGNICGKLPNSIVKLTRLETIDIDRRSLIQPPSGVWES |
| FPrintScan: PR00364 IPR000767
|
606-622 | DISEASERSIST Disease resistance protein
|
VKLTRLETIDIDRRSLI |
| Gene3D: G3DSA:3.80.10.10 | 687-845 | G3DSA:3.80.10.10 | INLRKLGILGVSNSTVKMLSIFSPVLKALEVLKLSFSSDPSEQIKLSSYPHIAKLHLNVNRTMALNSQSFPPNLIKLTLANFTVDRYILAVLKTFPKLRKLKMFICKYNEEKMDLSGEANGYSFPQLEVLHIHSPNGLSEVTCTDDVSMPKLKKLLLTG |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Tobacco Mosaic Virus | Tomato mosaic virus | PRGAV00000040 |
List of Contributions
There has not been any contribution yet.
