PRGDB00000481 (At1)

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At1
Gene Type Reference_R-Genes,_manually_curated
GenBank 18032027 (AY066012)
Gene Class Other
Domain Type Ser-Thr Kinase
Gene Species Cucumis melo

Comment?

Cucumis melo aminotransferase 1 mRNA, complete cds.

DNA Sequence

ATGGATTACGTTTATGCACCTGGAAAGAACCATCTCTTTGTCCCAGGGCCGGTCAACATTCCCGAACCGGTTCTGCGGGCAATGAACCGAAACAATGAGGATTATCGTTCGCCTGCCGTTCCTGCTTTGACGAAAACTCTTCTTGAAGATGTGAAAAAGATTTTCAAATCTACTACTGGAACCACATTCCTGATTCCCACAACAGGTACTGGTGCTTGGGAAAGTGCTCTTACAAACACATTGTCTCCTGGAGATAGGATCGTGTCCTTTCTCATTGGCCAGTTCAGTCTGCTCTGGATTGATCAGCAGCAGCGCCTTAACTTCAACGTCGATGTCGTCGAGAGCGACTGGGGTCAGGGTGCCAATCTTGATGTTCTGGAATCAAAGCTTGCCACCGATGGCGGCCACACCATCAAGGCAATTTGCATTGTCCACAATGAGACAGCTACTGGTGTCACTAATGACCTGTCTAAAGTTCGGTTCCTACTTGATAAGTACAAGCATCCTGCTCTTTTGCTGGTCGACGGAGTGTCATCCATATGTGCACTTGATTTTCGAATGGATGAATGGGGAGTCGACGTTGCTTTAACTGGTTCCCAAAAGGCTCTTTCTCTCCCTACAGGACTTGGAATTATTTGTGCCAGTCCCAAAGCACTAGAAGCATCCAAAACTTCAAAATCTGTCAAAGTCTTCTTTGATTGGAAAGACTATCTCAAATTCTACAATCTAGGAACATACTGGCCATACACCCCTTCCATTCAGCTCTTGTATGGATTAAGAGCAGCTCTCGATCTTCTTTTCGAGGAAGGTTTGGACAATGTGATTGCTCGGCACAGTCGTCTTGGCAAAGCAACAAGGCTTGCTGTGGAGGCTTGGGGGTTGAAAAATTGTACACAAAAAGAGGAATGGTTTAGTGACACTGTTACTGCTGTGCTTGTTCCTTCTTACATTGACAGTGCAGAAATTGTGAGAAGGGCATGGAAGAGATACAATTTGAGCTTGGGACTTGGCCTTAACAAAGTTGCTGGCAAAGTATTCAGAATTGGTCACCTTGGAAACCTTAATGAGTTGCAACTGTTGGGATGTCTTGCTGGTGTAGAAATGGTACTGAAGGATGTCGGGTACCCTGTTAAACTAGGGAGTGGAGTTGCTGCAGCTAGTGCATATCTTCAAAATAACATCCCTCTCATTCCTTCAAGGATTTAA


Protein sequences

Name Description Sequence
aminotransferase 1 aminotransferase 1 [Cucumis melo].

MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTGTTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKFYNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR21152
1-401 PTHR21152,AMINOTRANSFERASE CLASS V

MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTGTTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKFYNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI

HMMPanther: PTHR21152:SF7
1-401 PTHR21152:SF7,SUBFAMILY NOT NAMED

MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTGTTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKFYNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI

HMMPIR: PIRSF000524
IPR024169
3-396 SPT
Serine-pyruvate aminotransferase/2-aminoethylphosp

YVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTGTTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKFYNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVKLGSGVAAASAYLQNNIPL

superfamily: SSF53383
IPR015424
7-377 PyrdxlP-dep_Trfase_major
Pyridoxal phosphate-dependent transferase, major d

PGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTGTTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKFYNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPV

HMMPfam: PF00266
IPR000192
12-323 Aminotran_5
Aminotransferase, class V/Cysteine desulfurase

LFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTGTTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKFYNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPSYIDSAEIV

Gene3D: G3DSA:3.40.640.10
IPR015421
21-257 PyrdxlP-dep_Trfase_major_sub1
Pyridoxal phosphate-dependent transferase, major r

PEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTGTTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKFYNLGTYWPYTPSIQLLY

PatternScan: PS00595
IPR020578
192-212 AA_TRANSFER_CLASS_5
Aminotransferase class-V pyridoxal-phosphate bindi

VDVALTGSQKALSLPTGLGII

Gene3D: G3DSA:3.90.1150.10
IPR015422
258-383 PyrdxlP-dep_Trfase_major_sub2
Pyridoxal phosphate-dependent transferase, major r

GLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMVLKDVGYPVKLGSGV


Diseases

Disease Pathogen Avirulence gene
Downy mildew mellon

List of References



List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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