PRGDB00000489 (RCY1)
RCY1 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 29603481 (AB087829) |
Gene Class | CNL |
Domain Type | LRR, NBS, Others |
Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGCTGAAGGATTTGTGTCGTTTGGGCTTCAGAAGCTTTGGGATCTCCTGAGTCGAGAATCAGAGCGATTGCAGGGAATTGATGAGCAACTTGATGGACTAAAGCGTCAGCTGAGAAGTTTACAGTCGCTGTTGAAAGATGCAGATGCCAAGAAACATGGAAGTGATAGGGTGAGGAACTTCTTGGAAGATGTCAAAGACCTTGTTTTTGATGCTGAGGATATAATTGAATCCTATGTTCTGAACAAACTTAGAGGAGAAGGAAAAGGGGTCAAGAAGCATGTGAGACGACTTGCTCGCTTCTTAACGGATCGCCACAAAGTTGCTTCAGATATCGAGGGTATAACTAAGAGGATCTCTGAAGTGATTGGGGAAATGCAGAGTTTTGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGAAAGACAAAGGGAGATCCGACAAACGTATCCTGACAGTTCTGAAAGCGATCTTGTCGGGGTGGAGCAGAGTGTTAAAGAATTGGTTGGTCATTTGGTGGAGAATGATGTTCATCAAGTGGTTTCTATAGCTGGGATGGGCGGTATTGGCAAAACCACTCTGGCTAGACAAGTCTTTCATCATGACTTAGTCCGGCGTCACTTTGATGGATTCGCATGGGTCTGTGTTTCCCAACAATTTACACAGAAACATGTTTGGCAGAGGATCTTGCAAGAACTTCAGCCACATGATGGGGATATTTTACAGATGGACGAATATGCACTTCAGCGTAAACTCTTTCAATTGTTAGAGGCCGGTAGATATTTAGTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGATCGAATAAAAGCAGTGTTTCCACGGAAAAGAGGTTGGAAGATGCTGCTTACTTCTCGAAATGAAGGTGTTGGGATACATGCTGATCCAACATGTTTAACTTTTAGAGCAAGCATCCTTAACCCTGAAGAAAGTTGGAAGCTCTGTGAGAGAATAGTATTCCCTAGGAGAGATGAAACTGAAGTAAGGCTTGATGAAGAAATGGAAGCCATGGGAAAGGAAATGGTCACACATTGTGGAGGACTACCATTAGCTGTTAAAGCGTTGGGAGGCTTGTTAGCTAATAAACATACTGTTCCTGAGTGGAAAAGAGTTTTTGACAATATTGGATCTCAAATAGTAGGAGGATCGGGCTTAGATGACAACAGTCTCAATTCGGTTTACCGAATATTGTCTCTGAGTTATGAAGATTTGCCAACGCATTTAAAGCATTGTTTCCTTTACCTAGCCCATTTCCCTGAAGATTCCAAGATATATAGGCATGGTTTGTTCAATTACTGGGCAGTAGAAGGGATTTACGATGGATCAACCATCGAAGATAGTGGAGAATACTACCTAGAAGAGCTAGTGAGGAGAAATTTGGTTATTGCAGACAACAAAAATTTGGATTGGCATTCTAAATATTGTCAAATGCACGACATGATGAGAGAAGTATGTTTACCTAAAGCCAAAGAAGAGAACTTCCTACAAATTATCAAAGACCCTACTTGCACCTCTACCATCAATGCTCAATCTCCTAGTAGATCTCGCAGACTCAGCATACATAGTGGTAAAGCCTTTCATATATTGGGACACAGAAACAATGCAAAGGTGAGATCTCTCATAGTTTTGAGATTAAAGGAGGAAGACTATTGGATACGATCAGCTTCAGTCTTCCACAACTTAACATTGCTCAGGGTGTTGGATCTTTCTTGGGTAAAGTTTGAAGGAGGGAAGTTACCTTGTAGCATTGGAGGGCTCATCCACTTGAGATACTTGAGTTTATGCGGGGCTGGGGTATCTCATCTACCTTCTACTATGCGGAACTTAAAGCTTCTGCTCTATTTGAACTTAAATGTTGATAACGAGGAACTGATTCACGTGCCAAATGTTTTGAAAGAGATGATAGAGTTGAGGTACCTTTCCCTACCTATTAAAATGGATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGTTCTTGTTTGGTTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCATATGACTAAGCTCCGGTATCTCGCTGTATCTTTGAGCGAAAGGTGCAATTTTGAAACTCTATCGTCATCTCTCCGCGAATTGCGAAACCTCGAAACGCTTAATTTCCTCTTTACGCCCCAAACCTATATGGTTGATCATATGGGAGTGTTTGTTCTGGATCATTTTATTCATCTAAAAGAGTTGGGATTGGCAGTATCTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGTACACATATTTCTATTTTATTGCGGCATGGAAGAGGATCCAATGCCAATTCTAGAAAAGTTGCTTCATTTAAAGTCGGTTGAATTGTCAAATAAGGCTTTCGCTGGAAGGAGAATGGTGTGCTCAAAAGGCGGATTTACTCAATTATGTGCCCTAGAAATATCTGAACAATTGGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCGATGCCATGTCTTCGTACTTTGACTATACATGATTGCAAAAAGTTGAAGGAACTTCCAGATGGACTCAAGTACATAACATCCTTAAAGGAACTGAAGATTGAAGGAATGAAGAGGGAGTGGAAGGAGAAACTGGTACCAGGTGGAGAAGATTACTACAAAGTCCAACACATTCCCGATGTTCAATTTATCAACTGTGACCAGTAG
Protein sequences
Name | Description | Sequence |
---|---|---|
R-protein | R-protein [Arabidopsis thaliana]. | MAEGFVSFGLQKLWDLLSRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSGLDDNSLNSVYRILSLSYEDLPTHLKHCFLYLAHFPEDSKIYRHGLFNYWAVEGIYDGSTIEDSGEYYLEELVRRNLVIADNKNLDWHSKYCQMHDMMREVCLPKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHRNNAKVRSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPNVLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFINCDQ |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR23155:SF231 | 2-905 | PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS) | AEGFVSFGLQKLWDLLSRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSGLDDNSLNSVYRILSLSYEDLPTHLKHCFLYLAHFPEDSKIYRHGLFNYWAVEGIYDGSTIEDSGEYYLEELVRRNLVIADNKNLDWHSKYCQMHDMMREVCLPKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHRNNAKVRSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPNVLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFINCD |
HMMPanther: PTHR23155 | 2-905 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | AEGFVSFGLQKLWDLLSRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSGLDDNSLNSVYRILSLSYEDLPTHLKHCFLYLAHFPEDSKIYRHGLFNYWAVEGIYDGSTIEDSGEYYLEELVRRNLVIADNKNLDWHSKYCQMHDMMREVCLPKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHRNNAKVRSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPNVLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFINCD |
superfamily: SSF52540 | 143-393 | SSF52540 | LQERQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVG |
HMMPfam: PF00931 IPR002182
|
166-452 | NB-ARC,NBS NB-ARC
|
EQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSGLDDNSLNSVYRILSLSYEDLPTHLKHCFLYLAHFPEDSKIYRHGLFNYWAVEGIYD |
Gene3D: G3DSA:3.40.50.300 | 167-286 | G3DSA:3.40.50.300 | QSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFP |
FPrintScan: PR00364 IPR000767
|
184-199 | DISEASERSIST Disease resistance protein
|
VVSIAGMGGIGKTTLA |
FPrintScan: PR00364 IPR000767
|
259-273 | DISEASERSIST Disease resistance protein
|
LLEAGRYLVVLDDVW |
FPrintScan: PR00364 IPR000767
|
357-371 | DISEASERSIST Disease resistance protein
|
CGGLPLAVKALGGLL |
superfamily: SSF52058 | 488-874 | SSF52058,LRR | QMHDMMREVCLPKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHRNNAKVRSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPNVLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIEG |
Gene3D: G3DSA:3.80.10.10 | 550-641 | G3DSA:3.80.10.10 | RSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPN |
Gene3D: G3DSA:3.80.10.10 | 642-715 | G3DSA:3.80.10.10 | VLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLR |
Gene3D: G3DSA:3.80.10.10 | 716-873 | G3DSA:3.80.10.10 | ELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIE |
FPrintScan: PR00364 IPR000767
|
838-854 | DISEASERSIST Disease resistance protein
|
GSMPCLRTLTIHDCKKL |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Cucumber Mosaic Virus | Cucumber mosaic virus |
List of Contributions
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