PRGDB00000489 (RCY1)
| RCY1 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 29603481 (AB087829) |
| Gene Class | CNL |
| Domain Type | LRR, NBS, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGCTGAAGGATTTGTGTCGTTTGGGCTTCAGAAGCTTTGGGATCTCCTGAGTCGAGAATCAGAGCGATTGCAGGGAATTGATGAGCAACTTGATGGACTAAAGCGTCAGCTGAGAAGTTTACAGTCGCTGTTGAAAGATGCAGATGCCAAGAAACATGGAAGTGATAGGGTGAGGAACTTCTTGGAAGATGTCAAAGACCTTGTTTTTGATGCTGAGGATATAATTGAATCCTATGTTCTGAACAAACTTAGAGGAGAAGGAAAAGGGGTCAAGAAGCATGTGAGACGACTTGCTCGCTTCTTAACGGATCGCCACAAAGTTGCTTCAGATATCGAGGGTATAACTAAGAGGATCTCTGAAGTGATTGGGGAAATGCAGAGTTTTGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGAAAGACAAAGGGAGATCCGACAAACGTATCCTGACAGTTCTGAAAGCGATCTTGTCGGGGTGGAGCAGAGTGTTAAAGAATTGGTTGGTCATTTGGTGGAGAATGATGTTCATCAAGTGGTTTCTATAGCTGGGATGGGCGGTATTGGCAAAACCACTCTGGCTAGACAAGTCTTTCATCATGACTTAGTCCGGCGTCACTTTGATGGATTCGCATGGGTCTGTGTTTCCCAACAATTTACACAGAAACATGTTTGGCAGAGGATCTTGCAAGAACTTCAGCCACATGATGGGGATATTTTACAGATGGACGAATATGCACTTCAGCGTAAACTCTTTCAATTGTTAGAGGCCGGTAGATATTTAGTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGATCGAATAAAAGCAGTGTTTCCACGGAAAAGAGGTTGGAAGATGCTGCTTACTTCTCGAAATGAAGGTGTTGGGATACATGCTGATCCAACATGTTTAACTTTTAGAGCAAGCATCCTTAACCCTGAAGAAAGTTGGAAGCTCTGTGAGAGAATAGTATTCCCTAGGAGAGATGAAACTGAAGTAAGGCTTGATGAAGAAATGGAAGCCATGGGAAAGGAAATGGTCACACATTGTGGAGGACTACCATTAGCTGTTAAAGCGTTGGGAGGCTTGTTAGCTAATAAACATACTGTTCCTGAGTGGAAAAGAGTTTTTGACAATATTGGATCTCAAATAGTAGGAGGATCGGGCTTAGATGACAACAGTCTCAATTCGGTTTACCGAATATTGTCTCTGAGTTATGAAGATTTGCCAACGCATTTAAAGCATTGTTTCCTTTACCTAGCCCATTTCCCTGAAGATTCCAAGATATATAGGCATGGTTTGTTCAATTACTGGGCAGTAGAAGGGATTTACGATGGATCAACCATCGAAGATAGTGGAGAATACTACCTAGAAGAGCTAGTGAGGAGAAATTTGGTTATTGCAGACAACAAAAATTTGGATTGGCATTCTAAATATTGTCAAATGCACGACATGATGAGAGAAGTATGTTTACCTAAAGCCAAAGAAGAGAACTTCCTACAAATTATCAAAGACCCTACTTGCACCTCTACCATCAATGCTCAATCTCCTAGTAGATCTCGCAGACTCAGCATACATAGTGGTAAAGCCTTTCATATATTGGGACACAGAAACAATGCAAAGGTGAGATCTCTCATAGTTTTGAGATTAAAGGAGGAAGACTATTGGATACGATCAGCTTCAGTCTTCCACAACTTAACATTGCTCAGGGTGTTGGATCTTTCTTGGGTAAAGTTTGAAGGAGGGAAGTTACCTTGTAGCATTGGAGGGCTCATCCACTTGAGATACTTGAGTTTATGCGGGGCTGGGGTATCTCATCTACCTTCTACTATGCGGAACTTAAAGCTTCTGCTCTATTTGAACTTAAATGTTGATAACGAGGAACTGATTCACGTGCCAAATGTTTTGAAAGAGATGATAGAGTTGAGGTACCTTTCCCTACCTATTAAAATGGATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGTTCTTGTTTGGTTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCATATGACTAAGCTCCGGTATCTCGCTGTATCTTTGAGCGAAAGGTGCAATTTTGAAACTCTATCGTCATCTCTCCGCGAATTGCGAAACCTCGAAACGCTTAATTTCCTCTTTACGCCCCAAACCTATATGGTTGATCATATGGGAGTGTTTGTTCTGGATCATTTTATTCATCTAAAAGAGTTGGGATTGGCAGTATCTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGTACACATATTTCTATTTTATTGCGGCATGGAAGAGGATCCAATGCCAATTCTAGAAAAGTTGCTTCATTTAAAGTCGGTTGAATTGTCAAATAAGGCTTTCGCTGGAAGGAGAATGGTGTGCTCAAAAGGCGGATTTACTCAATTATGTGCCCTAGAAATATCTGAACAATTGGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCGATGCCATGTCTTCGTACTTTGACTATACATGATTGCAAAAAGTTGAAGGAACTTCCAGATGGACTCAAGTACATAACATCCTTAAAGGAACTGAAGATTGAAGGAATGAAGAGGGAGTGGAAGGAGAAACTGGTACCAGGTGGAGAAGATTACTACAAAGTCCAACACATTCCCGATGTTCAATTTATCAACTGTGACCAGTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| R-protein | R-protein [Arabidopsis thaliana]. | MAEGFVSFGLQKLWDLLSRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSGLDDNSLNSVYRILSLSYEDLPTHLKHCFLYLAHFPEDSKIYRHGLFNYWAVEGIYDGSTIEDSGEYYLEELVRRNLVIADNKNLDWHSKYCQMHDMMREVCLPKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHRNNAKVRSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPNVLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFINCDQ |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF231 | 2-905 | PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS) | AEGFVSFGLQKLWDLLSRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSGLDDNSLNSVYRILSLSYEDLPTHLKHCFLYLAHFPEDSKIYRHGLFNYWAVEGIYDGSTIEDSGEYYLEELVRRNLVIADNKNLDWHSKYCQMHDMMREVCLPKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHRNNAKVRSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPNVLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFINCD |
| HMMPanther: PTHR23155 | 2-905 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | AEGFVSFGLQKLWDLLSRESERLQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSGLDDNSLNSVYRILSLSYEDLPTHLKHCFLYLAHFPEDSKIYRHGLFNYWAVEGIYDGSTIEDSGEYYLEELVRRNLVIADNKNLDWHSKYCQMHDMMREVCLPKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHRNNAKVRSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPNVLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFINCD |
| superfamily: SSF52540 | 143-393 | SSF52540 | LQERQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVG |
| HMMPfam: PF00931 IPR002182
|
166-452 | NB-ARC,NBS NB-ARC
|
EQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSGLDDNSLNSVYRILSLSYEDLPTHLKHCFLYLAHFPEDSKIYRHGLFNYWAVEGIYD |
| Gene3D: G3DSA:3.40.50.300 | 167-286 | G3DSA:3.40.50.300 | QSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKEDWDRIKAVFP |
| FPrintScan: PR00364 IPR000767
|
184-199 | DISEASERSIST Disease resistance protein
|
VVSIAGMGGIGKTTLA |
| FPrintScan: PR00364 IPR000767
|
259-273 | DISEASERSIST Disease resistance protein
|
LLEAGRYLVVLDDVW |
| FPrintScan: PR00364 IPR000767
|
357-371 | DISEASERSIST Disease resistance protein
|
CGGLPLAVKALGGLL |
| superfamily: SSF52058 | 488-874 | SSF52058,LRR | QMHDMMREVCLPKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHRNNAKVRSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPNVLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIEG |
| Gene3D: G3DSA:3.80.10.10 | 550-641 | G3DSA:3.80.10.10 | RSLIVLRLKEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLCGAGVSHLPSTMRNLKLLLYLNLNVDNEELIHVPN |
| Gene3D: G3DSA:3.80.10.10 | 642-715 | G3DSA:3.80.10.10 | VLKEMIELRYLSLPIKMDDKTKLELGDLVNLEFLFGFSTQHSSVTDLLHMTKLRYLAVSLSERCNFETLSSSLR |
| Gene3D: G3DSA:3.80.10.10 | 716-873 | G3DSA:3.80.10.10 | ELRNLETLNFLFTPQTYMVDHMGVFVLDHFIHLKELGLAVSMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLLHLKSVELSNKAFAGRRMVCSKGGFTQLCALEISEQLELEEWIVEEGSMPCLRTLTIHDCKKLKELPDGLKYITSLKELKIE |
| FPrintScan: PR00364 IPR000767
|
838-854 | DISEASERSIST Disease resistance protein
|
GSMPCLRTLTIHDCKKL |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Cucumber Mosaic Virus | Cucumber mosaic virus |
List of Contributions
There has not been any contribution yet.
