PRGDB00000492 (RPP13)
RPP13 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 30692728 (NM_114520) |
Gene Class | CNL |
Domain Type | NBS, LRR, Others |
Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGTAGATGCGATCACGGAGTTCGTTGTGGGAAAGATCGGCAACTATCTCATTGAAGAAGCATCAATGTTTATGGCAGTCAAAGAGGATCTAGAAGAGCTGAAGACGGAGTTGACGTGCATCCATGGTTATCTCAAGGACGTTGAAGCGCGAGAAAGAGAAGATGAGGTCTCAAAAGAGTGGTCAAAACTGGTTTTAGATTTCGCTTATGACGTCGAAGATGTTTTGGACACTTATCACTTGAAACTCGAAGAAAGGTCACAAAGGCGAGGCTTGAGGAGATTGACCAACAAAATAGGCAGGAAGATGGATGCGTACAGCATAGTTGATGATATCAGAATTCTCAAGAGAAGAATTTTGGATATCACTCGCAAGAGGGAGACTTATGGTATAGGAGGCTTGAAAGAGCCTCAAGGAGGAGGGAATACTTCAAGTTTGAGAGTGAGACAACTTCGGCGTGCTCGATCTGTTGATCAAGAAGAGGTTGTAGTTGGTTTGGAAGATGATGCTAAGATTCTTTTGGAAAAGCTTCTTGATTATGAAGAGAAAAATAGATTTATTATCTCGATCTTCGGTATGGGAGGCCTTGGAAAGACTGCACTTGCTAGGAAGCTCTACAACTCAAGGGATGTGAAGGAAAGATTCGAATACCGCGCATGGACTTATGTTTCTCAAGAGTATAAAACTGGAGATATACTAATGAGAATCATTAGATCTTTGGGAATGACTTCTGGGGAAGAGTTGGAAAAGATCAGAAAGTTTGCAGAGGAAGAGTTAGAAGTTTACCTTTACGGTCTTCTAGAAGGGAAAAAATATTTGGTGGTGGTGGATGATATATGGGAGCGAGAAGCGTGGGACAGCTTAAAGAGAGCGTTACCTTGCAACCATGAAGGAAGTAGAGTCATCATCACTACGCGTATTAAAGCCGTGGCTGAAGGCGTAGATGGGAGATTCTATGCTCATAAGTTAAGGTTCTTGACGTTTGAAGAAAGCTGGGAGTTGTTTGAACAAAGAGCATTCAGGAATATACAAAGGAAGGATGAAGATTTGCTGAAAACCGGAAAAGAAATGGTTCAAAAATGCAGAGGGTTACCACTTTGTATAGTTGTTCTTGCGGGGCTTTTGTCGAGGAAGACACCAAGCGAGTGGAATGATGTTTGTAACAGTTTATGGAGACGCCTAAAGGATGACTCCATTCATGTTGCCCCTATTGTGTTTGATCTAAGTTTCAAGGAGCTGCGGCATGAGTCCAAACTCTGTTTTCTGTACCTTAGTATCTTCCCAGAGGACTATGAGATTGACCTAGAGAAGTTGATACACTTACTTGTAGCAGAAGGTTTTATACAAGGGGATGAAGAGATGATGATGGAAGATGTGGCTCGGTACTACATCGAAGAGCTGATAGATAGAAGCTTACTTGAAGCAGTGAGAAGAGAAAGAGGAAAAGTGATGTCTTGTAGAATCCATGATCTTCTGAGAGACGTGGCTATCAAGAAATCTAAAGAGCTCAACTTTGTAAACGTGTATAACGATCATGTGGCCCAACATTCTTCTACTACTTGCAGAAGGGAAGTGGTTCACCATCAGTTCAAGAGATACTCATCTGAGAAACGCAAGAACAAACGGATGCGATCCTTCTTATACTTTGGAGAATTCGACCATTTGGTAGGGCTTGATTTTGAAACATTGAAGCTACTTCGAGTGCTTGATTTCGGAAGTCTTTGGCTTCCTTTTAAAATTAATGGGGATCTGATCCACTTGAGGTACCTTGGAATTGATGGTAATTCTATCAACGATTTTGATATAGCAGCTATTATATCCAAGTTACGGTTTCTACAAACACTATTTGTATCTGACAATTATTTCATCGAGGAAACAATCGATCTCCGTAAGCTCACATCATTAAGACATGTCATAGGAAATTTTTTTGGAGGATTGCTTATAGGCGACGTAGCGAACCTTCAGACCTTGACGTCTATCTCCTTTGACAGCTGGAACAAACTAAAACCTGAGTTGCTCATAAATCTTCGAGATTTGGGGATTTCTGAAATGTCTAGGTCAAAGGAGAGAAGAGTTCATGTGAGCTGGGCTTCCTTGACTAAACTGGAAAGTCTTCGTGTTCTGAAGCTGGCGACGCCCACTGAAGTCCATTTATCGTTGGAATCAGAAGAAGCAGTTAGGTCCATGGATGTGATATCACGCAGTCTTGAATCCGTGACACTGGTTGGAATAACTTTCGAGGAAGACCCAATGCCTTTTTTGCAGAAAATGCCGAGACTGGAAGATCTGATCTTGTTAAGTTGTAATTACTCGGGGAAGATGAGCGTCAGCGAACAAGGTTTTGGTAGGCTGAGGAAGCTTGACTTGTTAATGAGAAGTTTAGATGAGTTGCAGATAGAAGAAGAGGCCATGCCCAATTTGATCGAGCTGGAAATAAGTGTTTCGAAAAGAGAAACAAAGCTGATAATTCCAAACCGTTTGCGAGCGTTTGGTCAAATCTACTGCTGA
Protein sequences
Name | Description | Sequence |
---|---|---|
RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13); ATP binding | RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13); ATP binding [Arabidopsis thaliana]. | MVDAITEFVVGKIGNYLIEEASMFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVSKEWSKLVLDFAYDVEDVLDTYHLKLEERSQRRGLRRLTNKIGRKMDAYSIVDDIRILKRRILDITRKRETYGIGGLKEPQGGGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWEREAWDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAFRNIQRKDEDLLKTGKEMVQKCRGLPLCIVVLAGLLSRKTPSEWNDVCNSLWRRLKDDSIHVAPIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQFKRYSSEKRKNKRMRSFLYFGEFDHLVGLDFETLKLLRVLDFGSLWLPFKINGDLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIGNFFGGLLIGDVANLQTLTSISFDSWNKLKPELLINLRDLGISEMSRSKERRVHVSWASLTKLESLRVLKLATPTEVHLSLESEEAVRSMDVISRSLESVTLVGITFEEDPMPFLQKMPRLEDLILLSCNYSGKMSVSEQGFGRLRKLDLLMRSLDELQIEEEAMPNLIELEISVSKRETKLIIPNRLRAFGQIYC |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR11017 | 13-834 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | IGNYLIEEASMFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVSKEWSKLVLDFAYDVEDVLDTYHLKLEERSQRRGLRRLTNKIGRKMDAYSIVDDIRILKRRILDITRKRETYGIGGLKEPQGGGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWEREAWDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAFRNIQRKDEDLLKTGKEMVQKCRGLPLCIVVLAGLLSRKTPSEWNDVCNSLWRRLKDDSIHVAPIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQFKRYSSEKRKNKRMRSFLYFGEFDHLVGLDFETLKLLRVLDFGSLWLPFKINGDLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIGNFFGGLLIGDVANLQTLTSISFDSWNKLKPELLINLRDLGISEMSRSKERRVHVSWASLTKLESLRVLKLATPTEVHLSLESEEAVRSMDVISRSLESVTLVGITFEEDPMPFLQKMPRLEDLILLSCNYSGKMSVSEQGFGRLRKLDLLMRSLDELQIEEEAMPNLIELEISVSKRETKLIIPNRLRAFGQIY |
HMMPanther: PTHR11017:SF14 | 13-834 | PTHR11017:SF14 | IGNYLIEEASMFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVSKEWSKLVLDFAYDVEDVLDTYHLKLEERSQRRGLRRLTNKIGRKMDAYSIVDDIRILKRRILDITRKRETYGIGGLKEPQGGGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWEREAWDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAFRNIQRKDEDLLKTGKEMVQKCRGLPLCIVVLAGLLSRKTPSEWNDVCNSLWRRLKDDSIHVAPIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQFKRYSSEKRKNKRMRSFLYFGEFDHLVGLDFETLKLLRVLDFGSLWLPFKINGDLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIGNFFGGLLIGDVANLQTLTSISFDSWNKLKPELLINLRDLGISEMSRSKERRVHVSWASLTKLESLRVLKLATPTEVHLSLESEEAVRSMDVISRSLESVTLVGITFEEDPMPFLQKMPRLEDLILLSCNYSGKMSVSEQGFGRLRKLDLLMRSLDELQIEEEAMPNLIELEISVSKRETKLIIPNRLRAFGQIY |
superfamily: SSF52540 | 146-397 | SSF52540 | LRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWEREAWDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAFRNIQRKDEDLLKTGKEMVQKCRGLPLCIVVLAGLLSRKTPSEWNDVCNSLWRRLKDD |
HMMPfam: PF00931 IPR002182
|
169-450 | NB-ARC,NBS NB-ARC
|
DAKILLEKLLDYEEKNRFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWEREAWDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAFRNIQRKDEDLLKTGKEMVQKCRGLPLCIVVLAGLLSRKTPSEWNDVCNSLWRRLKDDSIHVAPIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQG |
Gene3D: G3DSA:3.40.50.300 | 173-318 | G3DSA:3.40.50.300 | LLEKLLDYEEKNRFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWEREAWDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRF |
FPrintScan: PR00364 IPR000767
|
187-202 | DISEASERSIST Disease resistance protein
|
IISIFGMGGLGKTALA |
FPrintScan: PR00364 IPR000767
|
266-280 | DISEASERSIST Disease resistance protein
|
LLEGKKYLVVVDDIW |
FPrintScan: PR00364 IPR000767
|
361-375 | DISEASERSIST Disease resistance protein
|
CRGLPLCIVVLAGLL |
superfamily: SSF52058 | 471-813 | SSF52058,LRR | SLLEAVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQFKRYSSEKRKNKRMRSFLYFGEFDHLVGLDFETLKLLRVLDFGSLWLPFKINGDLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIGNFFGGLLIGDVANLQTLTSISFDSWNKLKPELLINLRDLGISEMSRSKERRVHVSWASLTKLESLRVLKLATPTEVHLSLESEEAVRSMDVISRSLESVTLVGITFEEDPMPFLQKMPRLEDLILLSCNYSGKMSVSEQGFGRLRKLDLLMRSLDELQIEEEAMPNLIELEIS |
Gene3D: G3DSA:3.80.10.10 | 541-679 | G3DSA:3.80.10.10 | KRMRSFLYFGEFDHLVGLDFETLKLLRVLDFGSLWLPFKINGDLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIGNFFGGLLIGDVANLQTLTSISFDSWNKLKPELLINLRDL |
FPrintScan: PR00364 IPR000767
|
700-716 | DISEASERSIST Disease resistance protein
|
TKLESLRVLKLATPTEV |
Gene3D: G3DSA:3.80.10.10 | 734-789 | G3DSA:3.80.10.10 | RSLESVTLVGITFEEDPMPFLQKMPRLEDLILLSCNYSGKMSVSEQGFGRLRKLDL |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Downy mildew |
List of Contributions
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