PRGDB00035726 (RPG1)

RPG1
Gene Type	Reference_R-Genes,_manually_curated
GenBank	117621925 (DQ854803)
Gene Class	RLK
Domain Type	Ser-Thr Kinase, Ser-Thr Kinase
Gene Species	Hordeum vulgare
	Comment?

Hordeum vulgare subsp. vulgare RPG1 (Rpg1) gene, Rpg1-Swiss Hv 489 allele, complete cds.

DNA Sequence

ATGGCGGCTGCCAGGAAGAAGATCGTGGTGAAGGTTGAGCTGAAAGACGACAGCCAGTGCAGGAAGGCGCTCAAAGCACTCTCTGCTCTCCGCGGCGTCTATGCGATTTCTTTTAACCGGGGGCATGGGAACATCACGGTCGTCGGCGAGGTTAACCCCGAGGATGTCCTGGCCAGGCTGCAAAAGAAGTTGTTTCCAAACGCTCAGATCGTCGCCGTCGGGCCCGCCAAGGAGAGGTCAAAGTACGAACTTACGTTCGAGTTCTTGAACCGTATCACAAACAATTTCTCCGAGGAGCGCATCATTGCTCGTGGTGGCCATGGAGTAGTTTACAAGGCAGTGCTGGACAATGGGCAGTACATTGCTGTCAAGAAGCTTCACCTCATGCCGGAGCTGGACGATGAGGAATTCAAAAACGAGTTTAATAATCTTATGAGGGTCCGACATCAAAATATCATACCGTTGGTTGGTTACTGCCATCATACAAAACAGGTGCTTGTTGAGCACAGTGGAAAGCATGTTTCTGCTCGAGTAGAAGAAAGATATTTATGCTCCGAATACTTGGAGGGAGGAAGCCTTGACAAGCATCTTTCTAATGAACCATGCGCACTTGCTTGGTACACATGTTACAAAATAATTAAAGGCATCTGTGATGGTTTACTTTGCCTTCACAAGGGATTCCAAGAGCCTATTTGGCATTTAGAATTAAAACCTACAAAAATTTTGCTGGATAAGGACATGATGCCCAAAATTGGAGGTTTTGGTTTCTCTAGACTCTTTGATTCAATAGAAACCTCCAGCACATCAGAAGTTAGGGGAACAAGTGTATATATGCCACCAGAATACATCAGTAAACGGCTAATCACATCAAGGTTTAATGTATTCAGTCTGGGTGTCATAATCTTGCAAATTATGGCAGGAAAGGAGAGCTATACCAAATGTGTAGACATTCCACCCGAAGAATTTACTGAGCGTGTATATGGATTCTGGGTAAATAGGATGCCGGGCACAGTATCGAAGCATACTTCCAATGAAGTTAAAACATGCATCGAAATAGCTCTAAAATGCGTGGAGTCCAATCGAGTGAACAGGCCTACTATAAATGAGATCATACAAAGGATGGATAAGATTGATATTGTTGAGTGCTCATCTTTAGGTGATCTATATAAGACAAGGGAGTTTGCATTCGAGTTCTTAGAACATATTACAAATGTTTTTTCTGAGCAGAACATAGTTGGTCGTGGTGCATGTGGTGTTATTTACAAGGGAGTGTTGGACAATGGAGAAGAAATTGCTGTTAAGAAACTTCATCAAACGTTGTCTATTGATGATGGGCTATTTAAGAAAGAGGTTAATAATGTAATGAGGGCCGAACATAAAAATATTGTACGGTTAGTTGGCTACTGCCACCATATATCACCAATAATTGTTGAGCACGAAGGAAAACATGTTTCTGCTAGTGTGATAGAAAGAGTGATTTGTTTCGAATACATGCAACGAGGAAGCCTTGACGACCAACTTTCAGCTGAATCCTGCAAACTTGATTGGGACAGATGTTACAAAATAATAAAAGGAATATGTGAGGGGTTACATTACCTTCATAATGCTGTCCCTCCCATTTACCATGGGGACTTAAAACCCGGAAATATTTTGCTGGATAAGGATATGGTGGCAAAGATCGGCGATTTTGGTTTGTCAAGAGTCTTTGATACAACGCAAACCTATATGACAACATCCGGAGTTATTAAAGGAACACCTGGATACATGTCACCAGAATACATCAATGAACATAAGATCAGTCTGAAGTCTGATGTATTTGCTCTCGGGGTCATAATCATAAAAATGATGACAGGAAAGGAGGACTACTCCAACTATGCACACACCCCTCGGGAAGAATTTATTGAGCATGTATGTAAAAAATGGCAAGTGAGGCTGCATGCAACAATGCGGTCCCATGTATTTGAAGAAGTGAGGACATGCATCGGAATAGCATTAAAATGTGTGGAGGATGACCGAACTCAAAGGCCTACGATGGCTCAGATTTTGAATGAATTAAGTAACATTGGTATTGTTAAGAGATCACCAGTAGATCGGGAAACAATGTCTACCCATGTATCCGAAGAAGTGAGGACATGCATCGAAATAGTGTTAAAATGTGTGGAGGATGACAGAACGCAAAGGCCTACAATAGCCCAGATTGTTAATGAACTAAGTAAGATTGGTATTGCTAAAGGTTCATCCATCAGCCAGATTTCCCAGGCTACTTCTTTCAGCCCAGAGCAGACGGCACAAGGAGGAGGCCATCAGGTAAACAAGCTGACTGCAACGCCACTAGAAGAAAAGTCGAGATCATGCCCTGGCCAAGCGTGCAAAGAACTGAAGCTAAAGAGGAAAGTAAAACTGAAGTTGAAGAGGAACGTAAAATGA

Protein sequences

Name	Description	Sequence
RPG1	RPG1 [Hordeum vulgare subsp. vulgare].	MAAARKKIVVKVELKDDSQCRKALKALSALRGVYAISFNRGHGNITVVGEVNPEDVLARLQKKLFPNAQIVAVGPAKERSKYELTFEFLNRITNNFSEERIIARGGHGVVYKAVLDNGQYIAVKKLHLMPELDDEEFKNEFNNLMRVRHQNIIPLVGYCHHTKQVLVEHSGKHVSARVEERYLCSEYLEGGSLDKHLSNEPCALAWYTCYKIIKGICDGLLCLHKGFQEPIWHLELKPTKILLDKDMMPKIGGFGFSRLFDSIETSSTSEVRGTSVYMPPEYISKRLITSRFNVFSLGVIILQIMAGKESYTKCVDIPPEEFTERVYGFWVNRMPGTVSKHTSNEVKTCIEIALKCVESNRVNRPTINEIIQRMDKIDIVECSSLGDLYKTREFAFEFLEHITNVFSEQNIVGRGACGVIYKGVLDNGEEIAVKKLHQTLSIDDGLFKKEVNNVMRAEHKNIVRLVGYCHHISPIIVEHEGKHVSASVIERVICFEYMQRGSLDDQLSAESCKLDWDRCYKIIKGICEGLHYLHNAVPPIYHGDLKPGNILLDKDMVAKIGDFGLSRVFDTTQTYMTTSGVIKGTPGYMSPEYINEHKISLKSDVFALGVIIIKMMTGKEDYSNYAHTPREEFIEHVCKKWQVRLHATMRSHVFEEVRTCIGIALKCVEDDRTQRPTMAQILNELSNIGIVKRSPVDRETMSTHVSEEVRTCIEIVLKCVEDDRTQRPTIAQIVNELSKIGIAKGSSISQISQATSFSPEQTAQGGGHQVNKLTATPLEEKSRSCPGQACKELKLKRKVKLKLKRNVK

Domains

Domain	Start-End	Description	Sequence
HMMPfam: PF00403 IPR006121	21-63	HMA Heavy metal-associated domain, HMA	RKALKALSALRGVYAISFNRGHGNITVVGEVNPEDVLARLQKK
superfamily: SSF56112 IPR011009	68-374	Kinase_like Protein kinase-like domain	AQIVAVGPAKERSKYELTFEFLNRITNNFSEERIIARGGHGVVYKAVLDNGQYIAVKKLHLMPELDDEEFKNEFNNLMRVRHQNIIPLVGYCHHTKQVLVEHSGKHVSARVEERYLCSEYLEGGSLDKHLSNEPCALAWYTCYKIIKGICDGLLCLHKGFQEPIWHLELKPTKILLDKDMMPKIGGFGFSRLFDSIETSSTSEVRGTSVYMPPEYISKRLITSRFNVFSLGVIILQIMAGKESYTKCVDIPPEEFTERVYGFWVNRMPGTVSKHTSNEVKTCIEIALKCVESNRVNRPTINEIIQRM
HMMPanther: PTHR24420	82-444	PTHR24420,FAMILY NOT NAMED	YELTFEFLNRITNNFSEERIIARGGHGVVYKAVLDNGQYIAVKKLHLMPELDDEEFKNEFNNLMRVRHQNIIPLVGYCHHTKQVLVEHSGKHVSARVEERYLCSEYLEGGSLDKHLSNEPCALAWYTCYKIIKGICDGLLCLHKGFQEPIWHLELKPTKILLDKDMMPKIGGFGFSRLFDSIETSSTSEVRGTSVYMPPEYISKRLITSRFNVFSLGVIILQIMAGKESYTKCVDIPPEEFTERVYGFWVNRMPGTVSKHTSNEVKTCIEIALKCVESNRVNRPTINEIIQRMDKIDIVECSSLGDLYKTREFAFEFLEHITNVFSEQNIVGRGACGVIYKGVLDNGEEIAVKKLHQTLSIDD
HMMPanther: PTHR24420:SF754	82-444	PTHR24420:SF754	YELTFEFLNRITNNFSEERIIARGGHGVVYKAVLDNGQYIAVKKLHLMPELDDEEFKNEFNNLMRVRHQNIIPLVGYCHHTKQVLVEHSGKHVSARVEERYLCSEYLEGGSLDKHLSNEPCALAWYTCYKIIKGICDGLLCLHKGFQEPIWHLELKPTKILLDKDMMPKIGGFGFSRLFDSIETSSTSEVRGTSVYMPPEYISKRLITSRFNVFSLGVIILQIMAGKESYTKCVDIPPEEFTERVYGFWVNRMPGTVSKHTSNEVKTCIEIALKCVESNRVNRPTINEIIQRMDKIDIVECSSLGDLYKTREFAFEFLEHITNVFSEQNIVGRGACGVIYKGVLDNGEEIAVKKLHQTLSIDD
Gene3D: G3DSA:3.30.200.20	83-155	G3DSA:3.30.200.20	ELTFEFLNRITNNFSEERIIARGGHGVVYKAVLDNGQYIAVKKLHLMPELDDEEFKNEFNNLMRVRHQNIIPL
ProfileScan: PS50011 IPR000719	96-377	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	FSEERIIARGGHGVVYKAVLDNGQYIAVKKLHLMPELDDEEFKNEFNNLMRVRHQNIIPLVGYCHHTKQVLVEHSGKHVSARVEERYLCSEYLEGGSLDKHLSNEPCALAWYTCYKIIKGICDGLLCLHKGFQEPIWHLELKPTKILLDKDMMPKIGGFGFSRLFDSIETSSTSEVRGTSVYMPPEYISKRLITSRFNVFSLGVIILQIMAGKESYTKCVDIPPEEFTERVYGFWVNRMPGTVSKHTSNEVKTCIEIALKCVESNRVNRPTINEIIQRMDKI
HMMPfam: PF00069 IPR000719	98-373	Pkinase,Ser-thr Protein kinase, catalytic domain	EERIIARGGHGVVYKAVLDNGQYIAVKKLHLMPELDDEEFKNEFNNLMRVRHQNIIPLVGYCHHTKQVLVEHSGKHVSARVEERYLCSEYLEGGSLDKHLSNEPCALAWYTCYKIIKGICDGLLCLHKGFQEPIWHLELKPTKILLDKDMMPKIGGFGFSRLFDSIETSSTSEVRGTSVYMPPEYISKRLITSRFNVFSLGVIILQIMAGKESYTKCVDIPPEEFTERVYGFWVNRMPGTVSKHTSNEVKTCIEIALKCVESNRVNRPTINEIIQR
Gene3D: G3DSA:1.10.510.10	156-373	G3DSA:1.10.510.10	VGYCHHTKQVLVEHSGKHVSARVEERYLCSEYLEGGSLDKHLSNEPCALAWYTCYKIIKGICDGLLCLHKGFQEPIWHLELKPTKILLDKDMMPKIGGFGFSRLFDSIETSSTSEVRGTSVYMPPEYISKRLITSRFNVFSLGVIILQIMAGKESYTKCVDIPPEEFTERVYGFWVNRMPGTVSKHTSNEVKTCIEIALKCVESNRVNRPTINEIIQR
superfamily: SSF56112 IPR011009	378-708	Kinase_like Protein kinase-like domain	DIVECSSLGDLYKTREFAFEFLEHITNVFSEQNIVGRGACGVIYKGVLDNGEEIAVKKLHQTLSIDDGLFKKEVNNVMRAEHKNIVRLVGYCHHISPIIVEHEGKHVSASVIERVICFEYMQRGSLDDQLSAESCKLDWDRCYKIIKGICEGLHYLHNAVPPIYHGDLKPGNILLDKDMVAKIGDFGLSRVFDTTQTYMTTSGVIKGTPGYMSPEYINEHKISLKSDVFALGVIIIKMMTGKEDYSNYAHTPREEFIEHVCKKWQVRLHATMRSHVFEEVRTCIGIALKCVEDDRTQRPTMAQILNELSNIGIVKRSPVDRETMSTHVSEE
Gene3D: G3DSA:3.30.200.20	390-461	G3DSA:3.30.200.20	KTREFAFEFLEHITNVFSEQNIVGRGACGVIYKGVLDNGEEIAVKKLHQTLSIDDGLFKKEVNNVMRAEHKN
ProfileScan: PS50011 IPR000719	406-690	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	FSEQNIVGRGACGVIYKGVLDNGEEIAVKKLHQTLSIDDGLFKKEVNNVMRAEHKNIVRLVGYCHHISPIIVEHEGKHVSASVIERVICFEYMQRGSLDDQLSAESCKLDWDRCYKIIKGICEGLHYLHNAVPPIYHGDLKPGNILLDKDMVAKIGDFGLSRVFDTTQTYMTTSGVIKGTPGYMSPEYINEHKISLKSDVFALGVIIIKMMTGKEDYSNYAHTPREEFIEHVCKKWQVRLHATMRSHVFEEVRTCIGIALKCVEDDRTQRPTMAQILNELSNIGI
HMMPfam: PF00069 IPR000719	408-684	Pkinase,Ser-thr Protein kinase, catalytic domain	EQNIVGRGACGVIYKGVLDNGEEIAVKKLHQTLSIDDGLFKKEVNNVMRAEHKNIVRLVGYCHHISPIIVEHEGKHVSASVIERVICFEYMQRGSLDDQLSAESCKLDWDRCYKIIKGICEGLHYLHNAVPPIYHGDLKPGNILLDKDMVAKIGDFGLSRVFDTTQTYMTTSGVIKGTPGYMSPEYINEHKISLKSDVFALGVIIIKMMTGKEDYSNYAHTPREEFIEHVCKKWQVRLHATMRSHVFEEVRTCIGIALKCVEDDRTQRPTMAQILNE
Gene3D: G3DSA:1.10.510.10	462-685	G3DSA:1.10.510.10	IVRLVGYCHHISPIIVEHEGKHVSASVIERVICFEYMQRGSLDDQLSAESCKLDWDRCYKIIKGICEGLHYLHNAVPPIYHGDLKPGNILLDKDMVAKIGDFGLSRVFDTTQTYMTTSGVIKGTPGYMSPEYINEHKISLKSDVFALGVIIIKMMTGKEDYSNYAHTPREEFIEHVCKKWQVRLHATMRSHVFEEVRTCIGIALKCVEDDRTQRPTMAQILNEL
PatternScan: PS00108 IPR008271	540-552	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	IYHGDLKPGNILL

Diseases

Disease	Pathogen	Avirulence gene
Stem Rust	Puccinia graminis

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Analyses

Blast

Blast matches against Reference R-Genes. Show