PRGDB00044646 (PIH2)

PIH2
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	192807255 (AB442172)
Gene Class	NL
Domain Type	LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, NBS, Others
Gene Species	Capsicum chinense
	Comment?

Capsicum chinense PIH2 gene for disease resistance protein, complete cds.

DNA Sequence

ATGGAGATTGGCTTAGCAGTCGGTAGTGCAGTTGGTGGTGCATTTCTGAATGTTCTCTTTGATAGGCTTGCTCGTCGGGTTGAGCTGCTCAAGATGTTTCATGATGATGGGCTTTTAGAGAAGCTGGAGAACATTTTGCTTGGTCTTCAGATTGTGCTGAGTGATGCAGAGAATAAGCAGGCATCAGATCAACTCGTGAGGCAGTGGCTTAATAAGCTTCAAAGTGCTGTGGACTCTGCTGAAAACTTAATGGAACAAGTTAATTATGAGGCTTTGAAGCTTAAAGTGGAAGGTCAACATCAAAATCTTGCAGAAACATGTAACCAACAAGTATTTCGATTTTTTTCAGAGTGCTGTGGGCGGCGCTTGAGTGATGATTTTTTTCTTAACATAAAGGAGAAGTTGGAAAACACCATTAAAAGTTTGGAGGAGTTGGAAAAGCAAATTGGTCGCCTTGGATTACAGAGGTATTTCGATTCGGGTAAGAAACTAGAAACTAGAACACCTTCAACTTCTGTGGTTGAATCTGATGTCTTTGGTAGGAAGAATGAAATAGAGAAATTGATTGACCATTTAATGTCTAAGGAGGCAAGTGAGAAAAATATGACGGTTGTCCCTATTGTTGGAATGGGGGGCATGGGTAAGACAACACTTGCTAAAGCTGCTTACAATGCTGAGAAGGTGAAAAACCATTTTAATTTGAAAGCTTGGTTTTGTGTATCTGAGCCATATGATGCTTTCAGAATAACAAAAGGATTACTTCAAGATATGGGCTCATTTGACTTAAACGATGACAATAATCTTAATCGGTTACAAGTCAAATTGAAGGAAAAACTAAATGGAAAAAGGTTTCTCATTGTTCTAGATGATGTGTGGAATGACAACTACAACGAGTGGGATGACTTGAGGAATATTTTTGTTCACGGAGATATTGGAAGTAAGATCATCGTGACGACACGTAAAGAGAGTGTTGCCTTGATGATGAGTAGTGGGGCAATCAACGTGGGGACTCTGTCTGATGAAGCCTCTTGGGCTTTATTCAAACGACATTCATTAGAAAACAAGGATCCTATGGAACATCCGGAACTTGAAGAGGTTGGAAAAAAAATTGCAGCTAAGTGCAAAGGACTGCCCTTAGCTCTGAAGACGCTCGCTGGCTTGTTACGCTCCGAATCAGAGGTTGAAGGGTGGAGACGTATTTTGAGAAGTGAAATATGGGACCTGTCGAACAATGACATATTACCAGCGTTAATGTTGAGCTACAATGAACTTCCCCCACATTTGAAGCCATGTTTTTCCTATTGTGCAATATTTCCTAGAGATTATCCATTTAGGAAAGAACAAATTATTCATTTGTGGATTGCTAATGGTCTTGTAGTACCACGGGAAGATGAAAGAATTCAAGATTTAGGCAACCAACTCTTTCTCGAGTTGAGATCAAGATCATTATTCGAAAGGGTTCCAAATCCTTCTGAAGGGAACACAGAGGAATTCTTAATGCATGATCTTGTCAATGATTTAGCCCAAATTGCATCTTCAAAACTCTGTGTCAGGTTGGAAGAATGCCAAGGATCTCATATGTTGGAAAAAAGTCAGCACATGTCGTATTCAATGGGGAGAGGTGGTGACTTTGAGAAATTGAAACCACTCATCAAATCAGAGCAGCTAAGGACACTGCTTCCAATAGAAATCCAGGACCTTTACGGCCCTAGGCTAAGCAAGAGGGTGCTGCATAACATACTGCCAAGTCTAAGATCCTTAAGGGCATTATCATTGTCTCATTACAGGATTAAGGAGTTGCCAGATGCTTTGTTTATCAAATTAAAGCTCCTCAGATTTTTGGACCTTTCTTGGACAGAGATTATAAAGTTGCCCTATTCTATCTGTACATTGTATAACTTGGAGACACTTCTCCTGTCATATTGTACATATCTTGAGGAGCTACCGCTGCAGATGGAAAATTTGATCAACCTGCGTCATCTTGACATAAGCAACACTTCTCATTTGAAGATGCCGCTACATCTGAGCAAGTTGAAAAGCCTCCAAGAGCTAGTCGGAGCCAATTTCCTTCTAGGTGGTCGCGGTGGTTGGAGAATGGAAGATTTGGGTGAAGCACATTACTTGTATGGATCTCTATCAATTTTAGAGTTGCAAAATGTGGTTGATAGAAGGGAAGCTCTGAAGGCAAACACGAGGGAGAAGAATCATGTTGAAAAGCTATCGTTAAAGTGGAGTGAAAATGATGCGGACAATTCTCAAACTGAAAGAGACATACTTGATGAGCTACTCCCACACACAGATATAAAAGAACTCAAAATCTCCGGATATAGAGGGACACAATTTCCAAATTGGCTAGCTGATCGTTCGTTTCTTAAGCTAGTGAAATTGTCTCTTAGCAACTGCAAGGACTGTTTTTCCTTGCCAGCACTGGGACAACTTCCTTGTTTGAAATTCCTTTCCATTAGAGAGATGCATCAAATAACAGAGGTGACGGAAGAATTCTATGGAAGTCCGTCCTCCAGAAAGCCTTTTAACTCTCTCGAGGAGCTTGAATTTGCAGCGATGCCGGAGTGGAAGCAGTGGCATGTACTAGGCAACGGAGAGTTTCCTGCACTTCAGGGCCTTTCCATTGAAGATTGCCCCAAGTTGATGGGGAAGTTGCCTGAAAATCTTTGTTCTCTGACAGAATTGATAATTTCAAGCTGCCCTGAACTCAATTTGGAGATGCCCATCCAACTTTCAAGTCTAAAAAAGTTTGAAGTTGATGGTTCTCCTAAGGCTGGAGTTCTCTTCGATGAAGCTGAACTGTTTACATCCCAAGTTAAGGGAACGAAGCAGATTGAGGAATTATGTATTAGTGACTGCAACTCTCTTACCTCCTTGCCTACTAGCACTCTGCCGAGTACCTTGAAGACAATAAGGATATGTCATTGCCGGAAATTGAAATTGGAGACTTCAGTTGGTGATATGAACTCTAACATGTTTCTGGAGGAATTGGCACTGGATGGATGTGATTCTATATCATCAGCTGAGTTGGTCCCTAGAGCACGCACTTTGTATGTAAAGAGTTGCCAAAACCTTACTAGGTTTTTGATTCCTAATGGGACTGAAAGACTCGATATTTGGGATTGTGAGAATCTTGAAATACTTTTGGTGGCATGTGGGACCCAGATGACGTCATTGAATATCCACAATTGTGCAAAGCTGAAGCGGCTGCCAGAACGTATGCAGGAACTTCTTCCATCTCTTAAGGAACTGAAACCCTACAGTTGTCCAGAAATAGAGTCCTTTCCTGATGGAGGATTGCCCTTCAATTTACAACTCCTTGGAATCAGCAATTGCGAGAAACTCCCCTCTCTCAGAGAGCTGTACATCTACCATAATGGCAGTGATGAAGAGATTGTTGGTGGTGAGAATTGGGAGTTGCCTAGCTCTATTCGAAGGCTTACCATAAGCAATCTGAAAACATTAAGCAGCCAACTTCTCAAAAGCCTCACCTCTCTTGAATCTCTAGATATTCGTAATTTACCTCAAATTCAGTCACTGCTGGAACAAGGGCTTCCCTCCTCTCTTTCTGAGCTTTATTTATATGACCATGATGAGCTCCATTCACTACCGACTGAAGGTCTTCGGCACCTCACTTCACTTCAAAGTCTATTGATCAGCAATTGCCCTCAACTCCAATCCCTTCCCAAATCAGCATTTCCCTCCTCCCTCTCTAAGCTGTCCATTAACAATTGCCCTAATCTCCAATCCCTTCCCAAATCAGCATTTCCGTGCTCCCTCTCTGAGCTGACCATCACACATTGCCCTAATCTCCAATCCCTTCCTGAAAAAGGGATGCCCTCTTCCCTCTCTACACTCTCTATTTACAACTGCCCATTGCTCAGACCACTCCTAGAATTTGACAAGGGGGAGTACTGGCCAGAAATTGCTCATATCTCCACCATAGAGATCGATTTCAGATACCTTTAA

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Capsicum chinense].	MEIGLAVGSAVGGAFLNVLFDRLARRVELLKMFHDDGLLEKLENILLGLQIVLSDAENKQASDQLVRQWLNKLQSAVDSAENLMEQVNYEALKLKVEGQHQNLAETCNQQVFRFFSECCGRRLSDDFFLNIKEKLENTIKSLEELEKQIGRLGLQRYFDSGKKLETRTPSTSVVESDVFGRKNEIEKLIDHLMSKEASEKNMTVVPIVGMGGMGKTTLAKAAYNAEKVKNHFNLKAWFCVSEPYDAFRITKGLLQDMGSFDLNDDNNLNRLQVKLKEKLNGKRFLIVLDDVWNDNYNEWDDLRNIFVHGDIGSKIIVTTRKESVALMMSSGAINVGTLSDEASWALFKRHSLENKDPMEHPELEEVGKKIAAKCKGLPLALKTLAGLLRSESEVEGWRRILRSEIWDLSNNDILPALMLSYNELPPHLKPCFSYCAIFPRDYPFRKEQIIHLWIANGLVVPREDERIQDLGNQLFLELRSRSLFERVPNPSEGNTEEFLMHDLVNDLAQIASSKLCVRLEECQGSHMLEKSQHMSYSMGRGGDFEKLKPLIKSEQLRTLLPIEIQDLYGPRLSKRVLHNILPSLRSLRALSLSHYRIKELPDALFIKLKLLRFLDLSWTEIIKLPYSICTLYNLETLLLSYCTYLEELPLQMENLINLRHLDISNTSHLKMPLHLSKLKSLQELVGANFLLGGRGGWRMEDLGEAHYLYGSLSILELQNVVDRREALKANTREKNHVEKLSLKWSENDADNSQTERDILDELLPHTDIKELKISGYRGTQFPNWLADRSFLKLVKLSLSNCKDCFSLPALGQLPCLKFLSIREMHQITEVTEEFYGSPSSRKPFNSLEELEFAAMPEWKQWHVLGNGEFPALQGLSIEDCPKLMGKLPENLCSLTELIISSCPELNLEMPIQLSSLKKFEVDGSPKAGVLFDEAELFTSQVKGTKQIEELCISDCNSLTSLPTSTLPSTLKTIRICHCRKLKLETSVGDMNSNMFLEELALDGCDSISSAELVPRARTLYVKSCQNLTRFLIPNGTERLDIWDCENLEILLVACGTQMTSLNIHNCAKLKRLPERMQELLPSLKELKPYSCPEIESFPDGGLPFNLQLLGISNCEKLPSLRELYIYHNGSDEEIVGGENWELPSSIRRLTISNLKTLSSQLLKSLTSLESLDIRNLPQIQSLLEQGLPSSLSELYLYDHDELHSLPTEGLRHLTSLQSLLISNCPQLQSLPKSAFPSSLSKLSINNCPNLQSLPKSAFPCSLSELTITHCPNLQSLPEKGMPSSLSTLSIYNCPLLRPLLEFDKGEYWPEIAHISTIEIDFRYL

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155:SF236	7-1302	PTHR23155:SF236,DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS)	VGSAVGGAFLNVLFDRLARRVELLKMFHDDGLLEKLENILLGLQIVLSDAENKQASDQLVRQWLNKLQSAVDSAENLMEQVNYEALKLKVEGQHQNLAETCNQQVFRFFSECCGRRLSDDFFLNIKEKLENTIKSLEELEKQIGRLGLQRYFDSGKKLETRTPSTSVVESDVFGRKNEIEKLIDHLMSKEASEKNMTVVPIVGMGGMGKTTLAKAAYNAEKVKNHFNLKAWFCVSEPYDAFRITKGLLQDMGSFDLNDDNNLNRLQVKLKEKLNGKRFLIVLDDVWNDNYNEWDDLRNIFVHGDIGSKIIVTTRKESVALMMSSGAINVGTLSDEASWALFKRHSLENKDPMEHPELEEVGKKIAAKCKGLPLALKTLAGLLRSESEVEGWRRILRSEIWDLSNNDILPALMLSYNELPPHLKPCFSYCAIFPRDYPFRKEQIIHLWIANGLVVPREDERIQDLGNQLFLELRSRSLFERVPNPSEGNTEEFLMHDLVNDLAQIASSKLCVRLEECQGSHMLEKSQHMSYSMGRGGDFEKLKPLIKSEQLRTLLPIEIQDLYGPRLSKRVLHNILPSLRSLRALSLSHYRIKELPDALFIKLKLLRFLDLSWTEIIKLPYSICTLYNLETLLLSYCTYLEELPLQMENLINLRHLDISNTSHLKMPLHLSKLKSLQELVGANFLLGGRGGWRMEDLGEAHYLYGSLSILELQNVVDRREALKANTREKNHVEKLSLKWSENDADNSQTERDILDELLPHTDIKELKISGYRGTQFPNWLADRSFLKLVKLSLSNCKDCFSLPALGQLPCLKFLSIREMHQITEVTEEFYGSPSSRKPFNSLEELEFAAMPEWKQWHVLGNGEFPALQGLSIEDCPKLMGKLPENLCSLTELIISSCPELNLEMPIQLSSLKKFEVDGSPKAGVLFDEAELFTSQVKGTKQIEELCISDCNSLTSLPTSTLPSTLKTIRICHCRKLKLETSVGDMNSNMFLEELALDGCDSISSAELVPRARTLYVKSCQNLTRFLIPNGTERLDIWDCENLEILLVACGTQMTSLNIHNCAKLKRLPERMQELLPSLKELKPYSCPEIESFPDGGLPFNLQLLGISNCEKLPSLRELYIYHNGSDEEIVGGENWELPSSIRRLTISNLKTLSSQLLKSLTSLESLDIRNLPQIQSLLEQGLPSSLSELYLYDHDELHSLPTEGLRHLTSLQSLLISNCPQLQSLPKSAFPSSLSKLSINNCPNLQSLPKSAFPCSLSELTITHCPNLQSLPEKGMPSSLSTLSIYNCPLLRPLLEF
HMMPanther: PTHR23155	7-1302	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	VGSAVGGAFLNVLFDRLARRVELLKMFHDDGLLEKLENILLGLQIVLSDAENKQASDQLVRQWLNKLQSAVDSAENLMEQVNYEALKLKVEGQHQNLAETCNQQVFRFFSECCGRRLSDDFFLNIKEKLENTIKSLEELEKQIGRLGLQRYFDSGKKLETRTPSTSVVESDVFGRKNEIEKLIDHLMSKEASEKNMTVVPIVGMGGMGKTTLAKAAYNAEKVKNHFNLKAWFCVSEPYDAFRITKGLLQDMGSFDLNDDNNLNRLQVKLKEKLNGKRFLIVLDDVWNDNYNEWDDLRNIFVHGDIGSKIIVTTRKESVALMMSSGAINVGTLSDEASWALFKRHSLENKDPMEHPELEEVGKKIAAKCKGLPLALKTLAGLLRSESEVEGWRRILRSEIWDLSNNDILPALMLSYNELPPHLKPCFSYCAIFPRDYPFRKEQIIHLWIANGLVVPREDERIQDLGNQLFLELRSRSLFERVPNPSEGNTEEFLMHDLVNDLAQIASSKLCVRLEECQGSHMLEKSQHMSYSMGRGGDFEKLKPLIKSEQLRTLLPIEIQDLYGPRLSKRVLHNILPSLRSLRALSLSHYRIKELPDALFIKLKLLRFLDLSWTEIIKLPYSICTLYNLETLLLSYCTYLEELPLQMENLINLRHLDISNTSHLKMPLHLSKLKSLQELVGANFLLGGRGGWRMEDLGEAHYLYGSLSILELQNVVDRREALKANTREKNHVEKLSLKWSENDADNSQTERDILDELLPHTDIKELKISGYRGTQFPNWLADRSFLKLVKLSLSNCKDCFSLPALGQLPCLKFLSIREMHQITEVTEEFYGSPSSRKPFNSLEELEFAAMPEWKQWHVLGNGEFPALQGLSIEDCPKLMGKLPENLCSLTELIISSCPELNLEMPIQLSSLKKFEVDGSPKAGVLFDEAELFTSQVKGTKQIEELCISDCNSLTSLPTSTLPSTLKTIRICHCRKLKLETSVGDMNSNMFLEELALDGCDSISSAELVPRARTLYVKSCQNLTRFLIPNGTERLDIWDCENLEILLVACGTQMTSLNIHNCAKLKRLPERMQELLPSLKELKPYSCPEIESFPDGGLPFNLQLLGISNCEKLPSLRELYIYHNGSDEEIVGGENWELPSSIRRLTISNLKTLSSQLLKSLTSLESLDIRNLPQIQSLLEQGLPSSLSELYLYDHDELHSLPTEGLRHLTSLQSLLISNCPQLQSLPKSAFPSSLSKLSINNCPNLQSLPKSAFPCSLSELTITHCPNLQSLPEKGMPSSLSTLSIYNCPLLRPLLEF
superfamily: SSF52540	161-411	SSF52540	GKKLETRTPSTSVVESDVFGRKNEIEKLIDHLMSKEASEKNMTVVPIVGMGGMGKTTLAKAAYNAEKVKNHFNLKAWFCVSEPYDAFRITKGLLQDMGSFDLNDDNNLNRLQVKLKEKLNGKRFLIVLDDVWNDNYNEWDDLRNIFVHGDIGSKIIVTTRKESVALMMSSGAINVGTLSDEASWALFKRHSLENKDPMEHPELEEVGKKIAAKCKGLPLALKTLAGLLRSESEVEGWRRILRSEIWDLSNN
Gene3D: G3DSA:3.40.50.300	175-318	G3DSA:3.40.50.300	ESDVFGRKNEIEKLIDHLMSKEASEKNMTVVPIVGMGGMGKTTLAKAAYNAEKVKNHFNLKAWFCVSEPYDAFRITKGLLQDMGSFDLNDDNNLNRLQVKLKEKLNGKRFLIVLDDVWNDNYNEWDDLRNIFVHGDIGSKIIVT
HMMPfam: PF00931 IPR002182	181-462	NB-ARC,NBS NB-ARC	RKNEIEKLIDHLMSKEASEKNMTVVPIVGMGGMGKTTLAKAAYNAEKVKNHFNLKAWFCVSEPYDAFRITKGLLQDMGSFDLNDDNNLNRLQVKLKEKLNGKRFLIVLDDVWNDNYNEWDDLRNIFVHGDIGSKIIVTTRKESVALMMSSGAINVGTLSDEASWALFKRHSLENKDPMEHPELEEVGKKIAAKCKGLPLALKTLAGLLRSESEVEGWRRILRSEIWDLSNNDILPALMLSYNELPPHLKPCFSYCAIFPRDYPFRKEQIIHLWIANGLVVPR
FPrintScan: PR00364 IPR000767	204-219	DISEASERSIST Disease resistance protein	VVPIVGMGGMGKTTLA
FPrintScan: PR00364 IPR000767	278-292	DISEASERSIST Disease resistance protein	KLNGKRFLIVLDDVW
FPrintScan: PR00364 IPR000767	374-388	DISEASERSIST Disease resistance protein	CKGLPLALKTLAGLL
superfamily: SSF52058	499-979	SSF52058,LRR	LMHDLVNDLAQIASSKLCVRLEECQGSHMLEKSQHMSYSMGRGGDFEKLKPLIKSEQLRTLLPIEIQDLYGPRLSKRVLHNILPSLRSLRALSLSHYRIKELPDALFIKLKLLRFLDLSWTEIIKLPYSICTLYNLETLLLSYCTYLEELPLQMENLINLRHLDISNTSHLKMPLHLSKLKSLQELVGANFLLGGRGGWRMEDLGEAHYLYGSLSILELQNVVDRREALKANTREKNHVEKLSLKWSENDADNSQTERDILDELLPHTDIKELKISGYRGTQFPNWLADRSFLKLVKLSLSNCKDCFSLPALGQLPCLKFLSIREMHQITEVTEEFYGSPSSRKPFNSLEELEFAAMPEWKQWHVLGNGEFPALQGLSIEDCPKLMGKLPENLCSLTELIISSCPELNLEMPIQLSSLKKFEVDGSPKAGVLFDEAELFTSQVKGTKQIEELCISDCNSLTSLPTSTLPSTLKTIRICHCR
Gene3D: G3DSA:3.80.10.10	572-684	G3DSA:3.80.10.10	LSKRVLHNILPSLRSLRALSLSHYRIKELPDALFIKLKLLRFLDLSWTEIIKLPYSICTLYNLETLLLSYCTYLEELPLQMENLINLRHLDISNTSHLKMPLHLSKLKSLQEL
FPrintScan: PR00364 IPR000767	653-669	DISEASERSIST Disease resistance protein	ENLINLRHLDISNTSHL
Gene3D: G3DSA:3.80.10.10	760-1024	G3DSA:3.80.10.10	DELLPHTDIKELKISGYRGTQFPNWLADRSFLKLVKLSLSNCKDCFSLPALGQLPCLKFLSIREMHQITEVTEEFYGSPSSRKPFNSLEELEFAAMPEWKQWHVLGNGEFPALQGLSIEDCPKLMGKLPENLCSLTELIISSCPELNLEMPIQLSSLKKFEVDGSPKAGVLFDEAELFTSQVKGTKQIEELCISDCNSLTSLPTSTLPSTLKTIRICHCRKLKLETSVGDMNSNMFLEELALDGCDSISSAELVPRARTLYVKSC
superfamily: SSF52058	1037-1313	SSF52058,LRR	ERLDIWDCENLEILLVACGTQMTSLNIHNCAKLKRLPERMQELLPSLKELKPYSCPEIESFPDGGLPFNLQLLGISNCEKLPSLRELYIYHNGSDEEIVGGENWELPSSIRRLTISNLKTLSSQLLKSLTSLESLDIRNLPQIQSLLEQGLPSSLSELYLYDHDELHSLPTEGLRHLTSLQSLLISNCPQLQSLPKSAFPSSLSKLSINNCPNLQSLPKSAFPCSLSELTITHCPNLQSLPEKGMPSSLSTLSIYNCPLLRPLLEFDKGEYWPEIAH
Gene3D: G3DSA:3.80.10.10	1038-1295	G3DSA:3.80.10.10	RLDIWDCENLEILLVACGTQMTSLNIHNCAKLKRLPERMQELLPSLKELKPYSCPEIESFPDGGLPFNLQLLGISNCEKLPSLRELYIYHNGSDEEIVGGENWELPSSIRRLTISNLKTLSSQLLKSLTSLESLDIRNLPQIQSLLEQGLPSSLSELYLYDHDELHSLPTEGLRHLTSLQSLLISNCPQLQSLPKSAFPSSLSKLSINNCPNLQSLPKSAFPCSLSELTITHCPNLQSLPEKGMPSSLSTLSIYNCPL
HMMPfam: PF00560 IPR001611	1215-1236	LRR_1 Leucine-rich repeat	SLQSLLISNCPQLQSLPKSAFP

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Analyses

Blast

Blast matches against Reference R-Genes. Show