PRGDB00044655 (RF12)
| RF12 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 18265367 (AB078516) |
| Gene Class | CNL |
| Domain Type | LRR, NBS, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGCAGGGGAACTTGTGTCGTTTGCAGTAAACAAGCTTTGGGACCTACTGAGCCATGAATACACGCTATTTCAGGGAGTCGAAGATCAAGTAGCTGAACTAAAAAGTGATCTAAACTTGCTAAAGTCGTTTTTGAAAGATGCAGATGCCAAGAAACACACAAGCGCATTGGTGAGATACTGTGTGGAGGAGATAAAGGATATTGTTTATGACGCAGAGGATGTACTCGAAACATTTGTACAAAAGGAAAAGCTTGGTACAACAAGTGGAATCAGGAAGCATATCAAAAGACTTACTTGCATTGTTCCAGATCGCAGGGAAATTGCATTATATATCGGACACGTAAGTAAGAGGATCACCAGGGTTATACGTGATATGCAGAGTTTTGGAGTACAACAAATGATTGTCGATGACTATATGCATCCTCTACGTAATAGAGAAAGGGAGATACGACGAACATTTCCTAAGGACAATGAAAGTGGTTTTGTGGCGTTGGAGGAAAATGTTAAAAAGTTAGTTGGATATTTTGTGGAGGAAGATAACTATCAAGTGGTTTCCATAACTGGAATGGGTGGTCTCGGTAAAACCACCCTTGCTAGACAAGTTTTTAACCACGATATGGTTACAAAGAAGTTTGATAAACTAGCATGGGTGAGTGTTTCACAAGATTTTACCCTGAAGAATGTATGGCAAAATATTTTGGGGGATCTCAAACCCAAAGAAGAAGAAACCAAAGAAGAAGAAAAGAAAATCTTGGAGATGACAGAATATACACTCCAACGTGAACTATATCAATTGTTGGAAATGTCTAAGTCGTTAATTGTCCTCGACGACATATGGAAGAAGGAAGATTGGGAAGTAATCAAGCCAATATTTCCACCGACAAAAGGTTGGAAACTGCTGCTTACTTCTCGAAATGAGAGTATCGTTGCGCCTACAAATACAAAATATTTCAACTTTAAACCAGAATGCCTAAAGACTGATGACAGTTGGAAACTTTTTCAAAGGATAGCATTTCCTATAAATGATGCATCTGAATTTGAGATTGATGAGGAAATGGAAAAGTTGGGTGAGAAAATGATCGAACATTGTGGAGGGCTACCATTGGCTATCAAAGTGTTAGGAGGTATGTTAGCTGAAAAATACACATCGCATGATTGGAGAAGATTATCTGAGAATATTGGATCTCATCTCGTGGGAGGAAGAACTAACTTTAATGACGACAACAACAATTCATGTAACTATGTATTGTCTTTGAGCTTTGAAGAATTGCCAAGTTATTTGAAGCATTGTTTCCTCTACTTGGCCCATTTTCCAGAAGATTATGAGATAAAGGTAGAGAATTTGTCATATTACTGGGCTGCAGAAGAAATATTCCAACCTAGGCATTACGATGGAGAAATCATTCGAGATGTTGGAGATGTCTACATAGAGGAGCTGGTGAGGAGGAATATGGTCATTTCCGAAAGAGATGTAAAGACTTCGAGATTTGAAACTTGTCATTTGCATGACATGATGAGAGAAGTTTGTTTGTTAAAAGCTAAAGAAGAAAACTTCCTACAAATTACCAGTAACCCCCCTTCAACTGCAAATTTTCAGTCTACTGTCACATCTCGCAGGCTTGTCTACCAATATCCTACTACTTTACATGTTGAGAAAGATATAAACAATCCAAAACTTCGATCTCTCGTGGTTGTTACCTTGGGAAGTTGGAACATGGCAGGTTCAAGCTTTACAAGGTTAGAACTTCTAAGGGTGTTAGATCTCGTTCAAGCCAAGTTGAAAGGAGGGAAGTTAGCTTCTTGCATTGGAAAGCTCATCCACTTAAGATACTTGAGCTTAGAGTATGCAGAGGTAACTCATATACCTTACTCACTAGGAAATCTGAAGTTGTTGATCTATCTGAATTTACATATCTCATTATCATCAAGATCCAACTTTGTGCCCAATGTCTTGATGGGGATGCAAGAACTGAGATACCTTGCGTTACCAAGCCTTATCGAGAGGAAGACAAAACTAGAATTGAGTAATCTAGTAAAATTGGAGACTTTAGAGAATTTCTCAACAAAGAATAGCAGCTTGGAGGATCTTCGTGGTATGGTCAGGCTGAGAACGCTCACCATCGAATTAATTGAGGAGACGAGTTTAGAAACTCTAGCTGCATCTATAGGTGGATTGAAATACCTGGAAAAACTTGAAATAGATGATCTCGGTTCTAAGATGAGGACGAAGGAAGCGGGGATCGTATTTGATTTCGTTCATCTCAAAAGGCTAAGGTTGGAACTGTATATGCCTAGGCTTTCTAAAGAACAACACTTCCCTTCTCACCTTACAACCTTATATCTACAACATTGTCGGTTGGAAGAGGATCCCATGCCGATTCTAGAGAAGTTGCTACAGTTGAAAGAGCTTGAATTAGGGCATAAATCTTTCAGTGGAAAGAAAATGGTTTGCTCGAGCTGTGGGTTTCCTCAATTGCAGAAGCTTTCAATAAGCGGACTAAAGGAATGGGAAGATTGGAAAGTAGAAGAAAGCTCCATGCCACTTCTTCTTACTCTCAATATCTTTGATTGTCGAAAATTAAAGCAGCTTCCTGATGAACACCTCCCTTCTCACCTTACAGCCATATCTCTAAAAAAGTGTGGGTTGGAGGATCCAATCCCAACTCTAGAGAGATTGGTTCACTTGAAAGAGCTATCATTATCTGAACTATGTGGGAGGATAATGGTTTGCACGGGCGGTGGGTTTCCTCAATTGCACAAGCTAGACTTATCTGAACTAGATGGGTTGGAAGAGTGGATAGTTGAGGATGGCTCCATGCCACGGCTTCATACTCTAGAAATTCGTAGGTGTCTAAAGTTAAAGAAGCTACCTAATGGGTTTCCACAATTGCAGAATCTTCACTTAACTGAGGTAGAGGAATGGGAAGAGGGGATGATAGTAAAACAAGGCTCCATGCCCCTTCTTCATACTCTCTATATCTGGCATTGTCCAAAGCTTCCTGGTGAACAACACTTCCCTTCTCACCTTACAACCGTATTTCTACTCGGTATGTATGTGGAGGAGGATCCAATGCGGATTCTAGAGAAGCTGCTTCACTTGAAAAATGTTTCTTTGTTTCAATCTTTCAGTGGGAAGAGAATGGTTTGCTCGGGCGGTGGGTTTCCTCAATTGCAGAAGCTTTCAATACGGGAAATAGAGTGGGAAGAGTGGATAGTAGAACAAGGCTCCATGCCCCTTCTTCATACTCTCTATATCGGGGTTTGTCCAAACTTAAAGGAGCTTCCTGATGGGCTGCGATTTATCTATTCATTAAAAAATTTGATAGTATCAAAAAGATGGAAGAAGAGATTGTCGGAAGGAGGAGAAGATTATTACAAAGTCCAACACATTCCTTCTGTTGAATTCGACGACTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Disease resistance protein | Disease resistance protein [Arabidopsis thaliana]. | MAGELVSFAVNKLWDLLSHEYTLFQGVEDQVAELKSDLNLLKSFLKDADAKKHTSALVRYCVEEIKDIVYDAEDVLETFVQKEKLGTTSGIRKHIKRLTCIVPDRREIALYIGHVSKRITRVIRDMQSFGVQQMIVDDYMHPLRNREREIRRTFPKDNESGFVALEENVKKLVGYFVEEDNYQVVSITGMGGLGKTTLARQVFNHDMVTKKFDKLAWVSVSQDFTLKNVWQNILGDLKPKEEETKEEEKKILEMTEYTLQRELYQLLEMSKSLIVLDDIWKKEDWEVIKPIFPPTKGWKLLLTSRNESIVAPTNTKYFNFKPECLKTDDSWKLFQRIAFPINDASEFEIDEEMEKLGEKMIEHCGGLPLAIKVLGGMLAEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNSCNYVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEEIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSNPPSTANFQSTVTSRRLVYQYPTTLHVEKDINNPKLRSLVVVTLGSWNMAGSSFTRLELLRVLDLVQAKLKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLHISLSSRSNFVPNVLMGMQELRYLALPSLIERKTKLELSNLVKLETLENFSTKNSSLEDLRGMVRLRTLTIELIEETSLETLAASIGGLKYLEKLEIDDLGSKMRTKEAGIVFDFVHLKRLRLELYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLLQLKELELGHKSFSGKKMVCSSCGFPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLKQLPDEHLPSHLTAISLKKCGLEDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHKLDLSELDGLEEWIVEDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEEWEEGMIVKQGSMPLLHTLYIWHCPKLPGEQHFPSHLTTVFLLGMYVEEDPMRILEKLLHLKNVSLFQSFSGKRMVCSGGGFPQLQKLSIREIEWEEWIVEQGSMPLLHTLYIGVCPNLKELPDGLRFIYSLKNLIVSKRWKKRLSEGGEDYYKVQHIPSVEFDD |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR11017 | 10-1029 | FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | VNKLWDLLSHEYTLFQGVEDQVAELKSDLNLLKSFLKDADAKKHTSALVRYCVEEIKDIVYDAEDVLETFVQKEKLGTTSGIRKHIKRLTCIVPDRREIALYIGHVSKRITRVIRDMQSFGVQQMIVDDYMHPLRNREREIRRTFPKDNESGFVALEENVKKLVGYFVEEDNYQVVSITGMGGLGKTTLARQVFNHDMVTKKFDKLAWVSVSQDFTLKNVWQNILGDLKPKEEETKEEEKKILEMTEYTLQRELYQLLEMSKSLIVLDDIWKKEDWEVIKPIFPPTKGWKLLLTSRNESIVAPTNTKYFNFKPECLKTDDSWKLFQRIAFPINDASEFEIDEEMEKLGEKMIEHCGGLPLAIKVLGGMLAEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNSCNYVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEEIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSNPPSTANFQSTVTSRRLVYQYPTTLHVEKDINNPKLRSLVVVTLGSWNMAGSSFTRLELLRVLDLVQAKLKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLHISLSSRSNFVPNVLMGMQELRYLALPSLIERKTKLELSNLVKLETLENFSTKNSSLEDLRGMVRLRTLTIELIEETSLETLAASIGGLKYLEKLEIDDLGSKMRTKEAGIVFDFVHLKRLRLELYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLLQLKELELGHKSFSGKKMVCSSCGFPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLKQLPDEHLPSHLTAISLKKCGLEDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHKLDLSELDGLEEWIVEDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEEWEEGMIVKQGSMPLLHTLYIWHCPKLPGEQHFPSHLTTVFLLGMYVEEDPMRILE |
| HMMPanther: PTHR11017:SF125 | 10-1029 | DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS), PUTATIVE,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS) | VNKLWDLLSHEYTLFQGVEDQVAELKSDLNLLKSFLKDADAKKHTSALVRYCVEEIKDIVYDAEDVLETFVQKEKLGTTSGIRKHIKRLTCIVPDRREIALYIGHVSKRITRVIRDMQSFGVQQMIVDDYMHPLRNREREIRRTFPKDNESGFVALEENVKKLVGYFVEEDNYQVVSITGMGGLGKTTLARQVFNHDMVTKKFDKLAWVSVSQDFTLKNVWQNILGDLKPKEEETKEEEKKILEMTEYTLQRELYQLLEMSKSLIVLDDIWKKEDWEVIKPIFPPTKGWKLLLTSRNESIVAPTNTKYFNFKPECLKTDDSWKLFQRIAFPINDASEFEIDEEMEKLGEKMIEHCGGLPLAIKVLGGMLAEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNSCNYVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEEIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSNPPSTANFQSTVTSRRLVYQYPTTLHVEKDINNPKLRSLVVVTLGSWNMAGSSFTRLELLRVLDLVQAKLKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLHISLSSRSNFVPNVLMGMQELRYLALPSLIERKTKLELSNLVKLETLENFSTKNSSLEDLRGMVRLRTLTIELIEETSLETLAASIGGLKYLEKLEIDDLGSKMRTKEAGIVFDFVHLKRLRLELYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLLQLKELELGHKSFSGKKMVCSSCGFPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLKQLPDEHLPSHLTAISLKKCGLEDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHKLDLSELDGLEEWIVEDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEEWEEGMIVKQGSMPLLHTLYIWHCPKLPGEQHFPSHLTTVFLLGMYVEEDPMRILE |
| superfamily: SSF52540 | 142-400 | P-loop containing nucleoside triphosphate hydrolases | PLRNREREIRRTFPKDNESGFVALEENVKKLVGYFVEEDNYQVVSITGMGGLGKTTLARQVFNHDMVTKKFDKLAWVSVSQDFTLKNVWQNILGDLKPKEEETKEEEKKILEMTEYTLQRELYQLLEMSKSLIVLDDIWKKEDWEVIKPIFPPTKGWKLLLTSRNESIVAPTNTKYFNFKPECLKTDDSWKLFQRIAFPINDASEFEIDEEMEKLGEKMIEHCGGLPLAIKVLGGMLAEKYTSHDWRRLSENIGSHLVG |
| HMMPfam: PF00931 IPR002182
|
166-463 | NB-ARC,NBS NB-ARC
|
EENVKKLVGYFVEEDNYQVVSITGMGGLGKTTLARQVFNHDMVTKKFDKLAWVSVSQDFTLKNVWQNILGDLKPKEEETKEEEKKILEMTEYTLQRELYQLLEMSKSLIVLDDIWKKEDWEVIKPIFPPTKGWKLLLTSRNESIVAPTNTKYFNFKPECLKTDDSWKLFQRIAFPINDASEFEIDEEMEKLGEKMIEHCGGLPLAIKVLGGMLAEKYTSHDWRRLSENIGSHLVGGRTNFNDDNNNSCNYVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEEIFQPRH |
| Gene3D: G3DSA:3.40.50.300 | 176-310 | no description | FVEEDNYQVVSITGMGGLGKTTLARQVFNHDMVTKKFDKLAWVSVSQDFTLKNVWQNILGDLKPKEEETKEEEKKILEMTEYTLQRELYQLLEMSKSLIVLDDIWKKEDWEVIKPIFPPTKGWKLLLTSRNESIV |
| FPrintScan: PR00364 IPR000767
|
184-199 | DISEASERSIST Disease resistance protein
|
VVSITGMGGLGKTTLA |
| Seg: seg | 238-256 | seg | KPKEEETKEEEKKILEMTE |
| FPrintScan: PR00364 IPR000767
|
266-280 | DISEASERSIST Disease resistance protein
|
LLEMSKSLIVLDDIW |
| FPrintScan: PR00364 IPR000767
|
364-378 | DISEASERSIST Disease resistance protein
|
CGGLPLAIKVLGGML |
| Seg: seg | 404-414 | seg | NFNDDNNNSCN |
| superfamily: SSF52058 | 501-928 | L domain-like,LRR | HLHDMMREVCLLKAKEENFLQITSNPPSTANFQSTVTSRRLVYQYPTTLHVEKDINNPKLRSLVVVTLGSWNMAGSSFTRLELLRVLDLVQAKLKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLHISLSSRSNFVPNVLMGMQELRYLALPSLIERKTKLELSNLVKLETLENFSTKNSSLEDLRGMVRLRTLTIELIEETSLETLAASIGGLKYLEKLEIDDLGSKMRTKEAGIVFDFVHLKRLRLELYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLLQLKELELGHKSFSGKKMVCSSCGFPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLKQLPDEHLPSHLTAISLKKCGLEDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHKLDLSELD |
| Seg: seg | 624-643 | seg | YSLGNLKLLIYLNLHISLSS |
| Seg: seg | 705-719 | seg | TLTIELIEETSLETL |
| Gene3D: G3DSA:3.80.10.10 | 779-862 | no description | TLYLQHCRLEEDPMPILEKLLQLKELELGHKSFSGKKMVCSSCGFPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLK |
| Seg: seg | 795-806 | seg | LEKLLQLKELEL |
| superfamily: SSF52058 | 860-1112 | L domain-like,LRR | KLKQLPDEHLPSHLTAISLKKCGLEDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHKLDLSELDGLEEWIVEDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEEWEEGMIVKQGSMPLLHTLYIWHCPKLPGEQHFPSHLTTVFLLGMYVEEDPMRILEKLLHLKNVSLFQSFSGKRMVCSGGGFPQLQKLSIREIEWEEWIVEQGSMPLLHTLYIGVCPNLKELPDGLRFIYSLKNLIVSK |
| Gene3D: G3DSA:3.80.10.10 | 863-1111 | no description | QLPDEHLPSHLTAISLKKCGLEDPIPTLERLVHLKELSLSELCGRIMVCTGGGFPQLHKLDLSELDGLEEWIVEDGSMPRLHTLEIRRCLKLKKLPNGFPQLQNLHLTEVEEWEEGMIVKQGSMPLLHTLYIWHCPKLPGEQHFPSHLTTVFLLGMYVEEDPMRILEKLLHLKNVSLFQSFSGKRMVCSGGGFPQLQKLSIREIEWEEWIVEQGSMPLLHTLYIGVCPNLKELPDGLRFIYSLKNLIVS |
| FPrintScan: PR00364 IPR000767
|
938-954 | DISEASERSIST Disease resistance protein
|
GSMPRLHTLEIRRCLKL |
| Seg: seg | 1065-1074 | seg | EIEWEEWIVE |
List of Contributions
There has not been any contribution yet.
