PRGDB00044659 (TIR; Disease resistance protein)
| TIR; Disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 100912984 (AC183371) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Medicago truncatula |
DNA Sequence
ATGGCTTCCTCCAGTTCTACTTCCAGCACCAACTTATTTGTTGCGGACCATCCAGTGGGGGTGGAATCTCGTGTACAAGAGGTTATTCAACTACTAAAATCCCGACAATCAGAAGATCCTGTACTGCTTGGGATATGGGGCGGAGGAGGGATCGGTAAAACAACAATTGCCAAAGCAGTTTATAATGAAATCCATCGCCACCATTTTGAGGCAAGGAGCTTCCTCTTAAATGTCGGTGAAGTTTGGAAACAAGATAATGGCGAAGTTTCTTTACAAAAACAACTTATTTCTGTTATCAGAAGCAGCAGCAGAAGAATAACGATAAATACAGTTGAATCCGGAAAAAGGATATTGCAGGAGAGGCTTCCCCGTTGGAAGATATTACTTGTGGTTGACGATGTGAATAAAAAAGACCAATTGGGTGCTTTGTGCATAAGACGCAAATGGTTTGGTCAAGGAAGTATAATAATCATCACAACGAGAGATCATGATTTACTTCGGTGGCTTCAGGTGGACCATGAAAGGTTCTATGATGTGTTCTTGAGTTTCAGAGGGAAAGATACTCGCGAAAGATTGACTTCACATCTCTATACCTCTCTTCAAAATGCTGGAATTTATGTTTTTAGAGACGATAATGAGATTCAACCAGGAGAAAAGATCTCAGTCTACCTTTTGGAAGCAATTAGACAGTATAGAATTTGTATTGTTGTTTTGTATAGTAATTATGCTAGTTCAAACTGGCGTATGCAAGAGTTGGAGGAAATCATGAAATGTCGCAGACGCTGGGGTTTGGTGGTTATACCAGTGTTTTATGAGGTAGATCCCTCAGAAGTAGAACATCAAACCGGTTGGTTTGGAGACGGTTTTGAAAGACTCATCTCAAGAATCTCAATGCGTAACGATATGAGAAGGAATTGGAAAGAAATGCTCCTTGAAATCGGTGGCATAGCAGGGTTTATCTTCCCAAATTCAAGGAATGGGAATGAGTATATCAGGATACTAGTGGAGCATGTTAAGAGCAGACTTAGTCAAAGTGGACCATTCTATTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| TIR; Disease resistance protein | TIR; Disease resistance protein [Medicago truncatula]. | MASSSSTSSTNLFVADHPVGVESRVQEVIQLLKSRQSEDPVLLGIWGGGGIGKTTIAKAVYNEIHRHHFEARSFLLNVGEVWKQDNGEVSLQKQLISVIRSSSRRITINTVESGKRILQERLPRWKILLVVDDVNKKDQLGALCIRRKWFGQGSIIIITTRDHDLLRWLQVDHERFYDVFLSFRGKDTRERLTSHLYTSLQNAGIYVFRDDNEIQPGEKISVYLLEAIRQYRICIVVLYSNYASSNWRMQELEEIMKCRRRWGLVVIPVFYEVDPSEVEHQTGWFGDGFERLISRISMRNDMRRNWKEMLLEIGGIAGFIFPNSRNGNEYIRILVEHVKSRLSQSGPFY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52540 | 13-231 | SSF52540 | FVADHPVGVESRVQEVIQLLKSRQSEDPVLLGIWGGGGIGKTTIAKAVYNEIHRHHFEARSFLLNVGEVWKQDNGEVSLQKQLISVIRSSSRRITINTVESGKRILQERLPRWKILLVVDDVNKKDQLGALCIRRKWFGQGSIIIITTRDHDLLRWLQVDHERFYDVFLSFRGKDTRERLTSHLYTSLQNAGIYVFRDDNEIQPGEKISVYLLEAIRQY |
| HMMPfam: PF00931 IPR002182
|
22-174 | NB-ARC,NBS NB-ARC
|
ESRVQEVIQLLKSRQSEDPVLLGIWGGGGIGKTTIAKAVYNEIHRHHFEARSFLLNVGEVWKQDNGEVSLQKQLISVIRSSSRRITINTVESGKRILQERLPRWKILLVVDDVNKKDQLGALCIRRKWFGQGSIIIITTRDHDLLRWLQVDHE |
| Gene3D: G3DSA:3.40.50.300 | 26-161 | G3DSA:3.40.50.300 | QEVIQLLKSRQSEDPVLLGIWGGGGIGKTTIAKAVYNEIHRHHFEARSFLLNVGEVWKQDNGEVSLQKQLISVIRSSSRRITINTVESGKRILQERLPRWKILLVVDDVNKKDQLGALCIRRKWFGQGSIIIITTR |
| HMMSmart: SM00382 IPR003593
|
39-202 | AAA,NBS AAA+ ATPase domain
|
DPVLLGIWGGGGIGKTTIAKAVYNEIHRHHFEARSFLLNVGEVWKQDNGEVSLQKQLISVIRSSSRRITINTVESGKRILQERLPRWKILLVVDDVNKKDQLGALCIRRKWFGQGSIIIITTRDHDLLRWLQVDHERFYDVFLSFRGKDTRERLTSHLYTSLQN |
| FPrintScan: PR00364 IPR000767
|
42-57 | DISEASERSIST Disease resistance protein
|
LLGIWGGGGIGKTTIA |
| HMMPanther: PTHR11017 | 44-179 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GIWGGGGIGKTTIAKAVYNEIHRHHFEARSFLLNVGEVWKQDNGEVSLQKQLISVIRSSSRRITINTVESGKRILQERLPRWKILLVVDDVNKKDQLGALCIRRKWFGQGSIIIITTRDHDLLRWLQVDHERFYDV |
| HMMPanther: PTHR11017:SF20 | 44-179 | PTHR11017:SF20,SUBFAMILY NOT NAMED | GIWGGGGIGKTTIAKAVYNEIHRHHFEARSFLLNVGEVWKQDNGEVSLQKQLISVIRSSSRRITINTVESGKRILQERLPRWKILLVVDDVNKKDQLGALCIRRKWFGQGSIIIITTRDHDLLRWLQVDHERFYDV |
| FPrintScan: PR00364 IPR000767
|
121-135 | DISEASERSIST Disease resistance protein
|
RLPRWKILLVVDDVN |
| superfamily: SSF52200 IPR000157
|
165-319 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
LLRWLQVDHERFYDVFLSFRGKDTRERLTSHLYTSLQNAGIYVFRDDNEIQPGEKISVYLLEAIRQYRICIVVLYSNYASSNWRMQELEEIMKCRRRWGLVVIPVFYEVDPSEVEHQTGWFGDGFERLISRISMRNDMRRNWKEMLLEIGGIAGF |
| Gene3D: G3DSA:3.40.50.10140 | 174-291 | G3DSA:3.40.50.10140 | ERFYDVFLSFRGKDTRERLTSHLYTSLQNAGIYVFRDDNEIQPGEKISVYLLEAIRQYRICIVVLYSNYASSNWRMQELEEIMKCRRRWGLVVIPVFYEVDPSEVEHQTGWFGDGFER |
| ProfileScan: PS50104 IPR000157
|
175-316 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
RFYDVFLSFRGKDTRERLTSHLYTSLQNAGIYVFRDDNEIQPGEKISVYLLEAIRQYRICIVVLYSNYASSNWRMQELEEIMKCRRRWGLVVIPVFYEVDPSEVEHQTGWFGDGFERLISRISMRNDMRRNWKEMLLEIGGI |
| HMMSmart: SM00255 IPR000157
|
176-316 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
FYDVFLSFRGKDTRERLTSHLYTSLQNAGIYVFRDDNEIQPGEKISVYLLEAIRQYRICIVVLYSNYASSNWRMQELEEIMKCRRRWGLVVIPVFYEVDPSEVEHQTGWFGDGFERLISRISMRNDMRRNWKEMLLEIGGI |
| HMMPfam: PF01582 IPR000157
|
179-310 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRGKDTRERLTSHLYTSLQNAGIYVFRDDNEIQPGEKISVYLLEAIRQYRICIVVLYSNYASSNWRMQELEEIMKCRRRWGLVVIPVFYEVDPSEVEHQTGWFGDGFERLISRISMRNDMRRNWKEML |
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