PRGDB00044660 (TIR; Disease resistance protein)
| TIR; Disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 100912984 (AC183371) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Medicago truncatula |
DNA Sequence
ATGAAAATAGTAGACCATGTTACTAATTTACTAGACAGAACAGACTTATTTGTTGCGGACCATCCGGTGGGGGTAAAGTCTCGTGTTCAAGATATCATTCAACTATTGAACAGTCAAGAATCAAAATCCCCTTTACTGCTCGGAGTATGGGGCATGGGAGGGATCGGCAAAACAACAATTGCTAAAGCTGCTTATAATAAAATTCATCACGATTTTGAGGCGAAGAGTTTCCTCCCAAATGTCAGGGAAGTCTGGGAACAAGATAATGGCGTAGTTTCTCTACAACAACAACTCCTTTCTGATATCTACAAAACAACAAAAATAAAGATAGATACAGTTGAATCAGGAAAAATGATATTGCAGGAAAGACTTCGTCATAAGAGGATATTTCTTGTGCTGGACGATGTGAATAAACTGGACCAATTGAATGCTTTGTGCGGAAGTCACGGATGGTTTGGTGAAGGAAGTAGAATAATCATCACAACAAGAGATGATGATTTACTTGGTAGGCTTAAAGTTCACTATGTGTATAGAATGAAAGAAATGGACAGCAATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAACAACCAATTCCTATAGAAGGTTTTGGTGAGCTTTCTACTGATGTTGTTAAGTACTCTAGGGGATTGCCTCTAGCTCTTCAAGTCATTGGGTCCTTTTTGTTGACCAGGCGAAGAAAAAAAGTGTGGAAGCGTGTATTGGAGAAACTCACAAAACCTGATGATAAAATACAGGAGGTGCTGAAATTGATTTTTGATAATTTATCCGACAATATCAAAGAAACATTCTTGGATATAGCTTGTTTGAACTTAAGTGGGATGTCCTTGGATGATTTACTTCAGATCTTCCAAAAGGATGTGCATTTCACAGAACTTGGAATGGAGGAACTCGTAATTAATGGCCTTGTAAATTTAGATAGTGAGAAAAGGATTGGAATGCATGACTTGGTACAACTGTTTGGAAGAGAAATTAGACAGGAAAAATCAACGGGTATGGCTGCGGGAGGGATTTACGATGTCTTCTTGAGTTTCCGGGGCGACGACACTCATGCAAAATTCATTTCACATCTCTATACGGCCCTTGAAAATGCTGGAATTTATGTTTTTAGAGGCGATGATGAGATTCAACGAGGTGATCAGGTCTCAGTGTCATTGTTGCAAGCCATAGGACAGTCTAGAATTTCTATCATTGTTTTGTCTAGAAACTATGCTAATTCAAGATGGTGTATGCTAGAGCTGGAGAATATCATGGGCAATAGCAGAACCCAGGGTATGGTGGTTGTACCAGTGTTCTATAAAATAGATCCCACAGAAGTACGCAATCAGTCGGGAAGGTTTGGTGAAGATTTTGAATCACTCTTATTAAGAATGTCGGTGGATACACACAAGTTTAGTAACTGGAGAAGAGCACTTGCTGAAGTTCGTGGTACAACAGGTGTTGTCATCATAAATTCCAGGTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| TIR; Disease resistance protein | TIR; Disease resistance protein [Medicago truncatula]. | MKIVDHVTNLLDRTDLFVADHPVGVKSRVQDIIQLLNSQESKSPLLLGVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTKPDDKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQIFQKDVHFTELGMEELVINGLVNLDSEKRIGMHDLVQLFGREIRQEKSTGMAAGGIYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALAEVRGTTGVVIINSR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52540 | 5-248 | SSF52540 | DHVTNLLDRTDLFVADHPVGVKSRVQDIIQLLNSQESKSPLLLGVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTK |
| Gene3D: G3DSA:3.40.50.300 | 19-175 | G3DSA:3.40.50.300 | ADHPVGVKSRVQDIIQLLNSQESKSPLLLGVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHY |
| HMMPfam: PF00931 IPR002182
|
26-291 | NB-ARC,NBS NB-ARC
|
KSRVQDIIQLLNSQESKSPLLLGVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTKPDDKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQI |
| FPrintScan: PR00364 IPR000767
|
46-61 | DISEASERSIST Disease resistance protein
|
LLGVWGMGGIGKTTIA |
| HMMPanther: PTHR11017:SF20 | 48-340 | PTHR11017:SF20,SUBFAMILY NOT NAMED | GVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTKPDDKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQIFQKDVHFTELGMEELVINGLVNLDSEKRIGMHDLVQLFGREIRQEKSTG |
| HMMPanther: PTHR11017 | 48-340 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTKPDDKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQIFQKDVHFTELGMEELVINGLVNLDSEKRIGMHDLVQLFGREIRQEKSTG |
| FPrintScan: PR00364 IPR000767
|
123-137 | DISEASERSIST Disease resistance protein
|
RLRHKRIFLVLDDVN |
| FPrintScan: PR00364 IPR000767
|
216-230 | DISEASERSIST Disease resistance protein
|
SRGLPLALQVIGSFL |
| superfamily: SSF46785 | 251-351 | SSF46785 | DKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQIFQKDVHFTELGMEELVINGLVNLDSEKRIGMHDLVQLFGREIRQEKSTGMAAGGIYDVFL |
| superfamily: SSF52200 IPR000157
|
335-489 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
QEKSTGMAAGGIYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALAEVRGTTGV |
| ProfileScan: PS50104 IPR000157
|
345-486 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
GIYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALAEVRGT |
| Gene3D: G3DSA:3.40.50.10140 | 346-462 | G3DSA:3.40.50.10140 | IYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESL |
| HMMSmart: SM00255 IPR000157
|
346-486 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
IYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALAEVRGT |
| HMMPfam: PF01582 IPR000157
|
349-481 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALA |
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