PRGDB00044660 (TIR; Disease resistance protein)

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TIR; Disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 100912984 (AC183371)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Medicago truncatula

Comment?

Medicago truncatula chromosome 7 clone mth2-9g15, complete sequence.

DNA Sequence

ATGAAAATAGTAGACCATGTTACTAATTTACTAGACAGAACAGACTTATTTGTTGCGGACCATCCGGTGGGGGTAAAGTCTCGTGTTCAAGATATCATTCAACTATTGAACAGTCAAGAATCAAAATCCCCTTTACTGCTCGGAGTATGGGGCATGGGAGGGATCGGCAAAACAACAATTGCTAAAGCTGCTTATAATAAAATTCATCACGATTTTGAGGCGAAGAGTTTCCTCCCAAATGTCAGGGAAGTCTGGGAACAAGATAATGGCGTAGTTTCTCTACAACAACAACTCCTTTCTGATATCTACAAAACAACAAAAATAAAGATAGATACAGTTGAATCAGGAAAAATGATATTGCAGGAAAGACTTCGTCATAAGAGGATATTTCTTGTGCTGGACGATGTGAATAAACTGGACCAATTGAATGCTTTGTGCGGAAGTCACGGATGGTTTGGTGAAGGAAGTAGAATAATCATCACAACAAGAGATGATGATTTACTTGGTAGGCTTAAAGTTCACTATGTGTATAGAATGAAAGAAATGGACAGCAATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAACAACCAATTCCTATAGAAGGTTTTGGTGAGCTTTCTACTGATGTTGTTAAGTACTCTAGGGGATTGCCTCTAGCTCTTCAAGTCATTGGGTCCTTTTTGTTGACCAGGCGAAGAAAAAAAGTGTGGAAGCGTGTATTGGAGAAACTCACAAAACCTGATGATAAAATACAGGAGGTGCTGAAATTGATTTTTGATAATTTATCCGACAATATCAAAGAAACATTCTTGGATATAGCTTGTTTGAACTTAAGTGGGATGTCCTTGGATGATTTACTTCAGATCTTCCAAAAGGATGTGCATTTCACAGAACTTGGAATGGAGGAACTCGTAATTAATGGCCTTGTAAATTTAGATAGTGAGAAAAGGATTGGAATGCATGACTTGGTACAACTGTTTGGAAGAGAAATTAGACAGGAAAAATCAACGGGTATGGCTGCGGGAGGGATTTACGATGTCTTCTTGAGTTTCCGGGGCGACGACACTCATGCAAAATTCATTTCACATCTCTATACGGCCCTTGAAAATGCTGGAATTTATGTTTTTAGAGGCGATGATGAGATTCAACGAGGTGATCAGGTCTCAGTGTCATTGTTGCAAGCCATAGGACAGTCTAGAATTTCTATCATTGTTTTGTCTAGAAACTATGCTAATTCAAGATGGTGTATGCTAGAGCTGGAGAATATCATGGGCAATAGCAGAACCCAGGGTATGGTGGTTGTACCAGTGTTCTATAAAATAGATCCCACAGAAGTACGCAATCAGTCGGGAAGGTTTGGTGAAGATTTTGAATCACTCTTATTAAGAATGTCGGTGGATACACACAAGTTTAGTAACTGGAGAAGAGCACTTGCTGAAGTTCGTGGTACAACAGGTGTTGTCATCATAAATTCCAGGTAA


Protein sequences

Name Description Sequence
TIR; Disease resistance protein TIR; Disease resistance protein [Medicago truncatula].

MKIVDHVTNLLDRTDLFVADHPVGVKSRVQDIIQLLNSQESKSPLLLGVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTKPDDKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQIFQKDVHFTELGMEELVINGLVNLDSEKRIGMHDLVQLFGREIRQEKSTGMAAGGIYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALAEVRGTTGVVIINSR

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
5-248 SSF52540

DHVTNLLDRTDLFVADHPVGVKSRVQDIIQLLNSQESKSPLLLGVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTK

Gene3D: G3DSA:3.40.50.300
19-175 G3DSA:3.40.50.300

ADHPVGVKSRVQDIIQLLNSQESKSPLLLGVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHY

HMMPfam: PF00931
IPR002182
26-291 NB-ARC,NBS
NB-ARC

KSRVQDIIQLLNSQESKSPLLLGVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTKPDDKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQI

FPrintScan: PR00364
IPR000767
46-61 DISEASERSIST
Disease resistance protein

LLGVWGMGGIGKTTIA

HMMPanther: PTHR11017:SF20
48-340 PTHR11017:SF20,SUBFAMILY NOT NAMED

GVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTKPDDKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQIFQKDVHFTELGMEELVINGLVNLDSEKRIGMHDLVQLFGREIRQEKSTG

HMMPanther: PTHR11017
48-340 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVWGMGGIGKTTIAKAAYNKIHHDFEAKSFLPNVREVWEQDNGVVSLQQQLLSDIYKTTKIKIDTVESGKMILQERLRHKRIFLVLDDVNKLDQLNALCGSHGWFGEGSRIIITTRDDDLLGRLKVHYVYRMKEMDSNESLELFSWHAFKQPIPIEGFGELSTDVVKYSRGLPLALQVIGSFLLTRRRKKVWKRVLEKLTKPDDKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQIFQKDVHFTELGMEELVINGLVNLDSEKRIGMHDLVQLFGREIRQEKSTG

FPrintScan: PR00364
IPR000767
123-137 DISEASERSIST
Disease resistance protein

RLRHKRIFLVLDDVN

FPrintScan: PR00364
IPR000767
216-230 DISEASERSIST
Disease resistance protein

SRGLPLALQVIGSFL

superfamily: SSF46785
251-351 SSF46785

DKIQEVLKLIFDNLSDNIKETFLDIACLNLSGMSLDDLLQIFQKDVHFTELGMEELVINGLVNLDSEKRIGMHDLVQLFGREIRQEKSTGMAAGGIYDVFL

superfamily: SSF52200
IPR000157
335-489 TIR
Toll/interleukin-1 receptor homology (TIR) domain

QEKSTGMAAGGIYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALAEVRGTTGV

ProfileScan: PS50104
IPR000157
345-486 TIR
Toll/interleukin-1 receptor homology (TIR) domain

GIYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALAEVRGT

Gene3D: G3DSA:3.40.50.10140
346-462 G3DSA:3.40.50.10140

IYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESL

HMMSmart: SM00255
IPR000157
346-486 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IYDVFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALAEVRGT

HMMPfam: PF01582
IPR000157
349-481 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGDDTHAKFISHLYTALENAGIYVFRGDDEIQRGDQVSVSLLQAIGQSRISIIVLSRNYANSRWCMLELENIMGNSRTQGMVVVPVFYKIDPTEVRNQSGRFGEDFESLLLRMSVDTHKFSNWRRALA






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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