PRGDB00044666 (Disease resistance protein; Calcium-binding EF-hand)

Disease resistance protein; Calcium-binding EF-hand
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	62701970 (AC155880)
Gene Class	NL
Domain Type	LRR, NBS, LRR, LRR, Others
Gene Species	Medicago truncatula
	Comment?

Medicago truncatula chromosome 2 clone mte1-55i22, complete sequence.

DNA Sequence

ATGATTAACTCAACTTCAACTTCAACTCAAAGACCAGTTTTGGCTCTTTCTCACCAAGAAAACATTGAACACTTTGATATTGAGCAATTAGTGAGTCGTCTTAGACATAAGCTTTCAGGTAAAAAGTTTGTACTCGTCTTAGATGATATATGGGATGATAACCGTTCAAAATGGATTGAGTTGAAAGATCTGATAAAAGTTGGTGCAGTAGAAAGCAAAATCTTAGTGACAACACGTAGTAACTTGATTGCTTCGATGATGGGAACGGTTCCCATGTATACTTTAAAAGGTCTTTCTTTGGATAATTGTTTGTCTCTCTTTGTCAAATGGGCATTTAAGGAAGGAGAAGAAGTAAAGTATCCACATCTATCGGAGATTGGAAAAGATATAGCGAAAAAATGCCGAGGGATTCCATTAGCAGTGAAAACGTTAGGAAGTTCACTCTTCTCAAAATTTGATTTAGATAAGTGGAAGTTCGTCAGGGACTCCCAAATATGGAATTTAAGGCAAAACAAAGATGATATTTTACCTGTGCTTAAGTTAAGCTATGATCAAATGCCATCCTATTTGAGACATTGTTTTGCTTATTTTTCCCTTTTTCCCAAAGATTATCTTTTTACTCTTGGTGAAATTTGTAATCTATGGGATGTATTTGGATTAGTTCAATCACCAAATGGAAGTCAAAAGCTAGAGAACATTGCAAGAGATTATATAGATGAGTTACATTCAAGATCATTTCTTCAGGATTTTGAAGACTTTGGCCAGACATGTGTTTTCAAAGTACATGATTTGGTGCACGATCTTGCAATGTATGTAGCAAAAGACGCATTTGTGGTGGTAAACTCCTATACTCAAAATATACCTGAGCAAGCAAGACATTTATCAATTGTTGAAAATGACTCACTTGGTCATGCTTTGTTTTCCAAGTCGAAAAGTGTGAGAACTATTTTGTGTCCCATCCAAGGAGTAGGTGTCGATAGTGAAACTCTCTTGGATTCATGGATATCAAGATACAAATACTTGCGCTATTTAGATTTAAGTGATTCTTCATTTGAGGAGCTGCCTAATTCGATTTCTAAATTGGACCTTCTTCGAGTTCTCATTCTTTCTCGCAACAGCAAAATCAGAAGACTTCCTCATTCTATATGTGAACTCCAAAATTTGCAAGAGTTGTCAGTCAGAGGATGCATGGAGCTTGAAGCATTGCCTAAAGGACTAGGGAAGCTAATCAACCTTCGACAATTGTTTATAACAACAAAGCAATCTGTTTTGTCACATGATGAATTTGCAAGCATGCACCATCTTCAAACTTTGGGTTTTCATTATTGTGACAATTTGAAGTTTTTCTTTTACGCTGCACAACAACTCGCTTCCCTTGAAACATTGTTTGTTCAATCATGTGGGAGCCTAGAGGTCTTACCTCTATATTTTTCCTAA

Protein sequences

Name	Description	Sequence
Disease resistance protein; Calcium-binding EF-hand	Disease resistance protein; Calcium-binding EF-hand [Medicago truncatula].	MINSTSTSTQRPVLALSHQENIEHFDIEQLVSRLRHKLSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQNKDDILPVLKLSYDQMPSYLRHCFAYFSLFPKDYLFTLGEICNLWDVFGLVQSPNGSQKLENIARDYIDELHSRSFLQDFEDFGQTCVFKVHDLVHDLAMYVAKDAFVVVNSYTQNIPEQARHLSIVENDSLGHALFSKSKSVRTILCPIQGVGVDSETLLDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFITTKQSVLSHDEFASMHHLQTLGFHYCDNLKFFFYAAQQLASLETLFVQSCGSLEVLPLYFS

Domains

Domain	Start-End	Description	Sequence
HMMPfam: PF00931 IPR002182	20-223	NB-ARC,NBS NB-ARC	ENIEHFDIEQLVSRLRHKLSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQNKDDILPVLKLSYDQMPSYLRHCFAYFSLFPKDYLFTLGEICNLWDVFGLVQS
superfamily: SSF52540	26-171	SSF52540	DIEQLVSRLRHKLSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQN
FPrintScan: PR00364 IPR000767	37-51	DISEASERSIST Disease resistance protein	KLSGKKFVLVLDDIW
HMMPanther: PTHR11017:SF28	38-417	PTHR11017:SF28	LSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQNKDDILPVLKLSYDQMPSYLRHCFAYFSLFPKDYLFTLGEICNLWDVFGLVQSPNGSQKLENIARDYIDELHSRSFLQDFEDFGQTCVFKVHDLVHDLAMYVAKDAFVVVNSYTQNIPEQARHLSIVENDSLGHALFSKSKSVRTILCPIQGVGVDSETLLDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFI
HMMPanther: PTHR11017	38-417	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	LSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQNKDDILPVLKLSYDQMPSYLRHCFAYFSLFPKDYLFTLGEICNLWDVFGLVQSPNGSQKLENIARDYIDELHSRSFLQDFEDFGQTCVFKVHDLVHDLAMYVAKDAFVVVNSYTQNIPEQARHLSIVENDSLGHALFSKSKSVRTILCPIQGVGVDSETLLDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFI
FPrintScan: PR00364 IPR000767	134-148	DISEASERSIST Disease resistance protein	CRGIPLAVKTLGSSL
superfamily: SSF52058	260-478	SSF52058,LRR	KVHDLVHDLAMYVAKDAFVVVNSYTQNIPEQARHLSIVENDSLGHALFSKSKSVRTILCPIQGVGVDSETLLDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFITTKQSVLSHDEFASMHHLQTLGFHYCDNLKFFFYAAQQLASLETLFVQSCGSLEVLPLYFS
Gene3D: G3DSA:3.80.10.10	331-472	G3DSA:3.80.10.10	LDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFITTKQSVLSHDEFASMHHLQTLGFHYCDNLKFFFYAAQQLASLETLFVQSCGSLEV
HMMPfam: PF12799	340-375	LRR_4,Leucine Rich repeats (2 copies)	YLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKI
HMMPfam: PF00560 IPR001611	387-409	LRR_1 Leucine-rich repeat	NLQELSVRGCMELEALPKGLGKL
FPrintScan: PR00364 IPR000767	454-470	DISEASERSIST Disease resistance protein	QQLASLETLFVQSCGSL

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Analyses

Blast

Blast matches against Reference R-Genes. Show