PRGDB00044666 (Disease resistance protein; Calcium-binding EF-hand)
Disease resistance protein; Calcium-binding EF-hand | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 62701970 (AC155880) |
Gene Class | NL |
Domain Type | LRR, NBS, LRR, LRR, Others |
Gene Species | Medicago truncatula |
DNA Sequence
ATGATTAACTCAACTTCAACTTCAACTCAAAGACCAGTTTTGGCTCTTTCTCACCAAGAAAACATTGAACACTTTGATATTGAGCAATTAGTGAGTCGTCTTAGACATAAGCTTTCAGGTAAAAAGTTTGTACTCGTCTTAGATGATATATGGGATGATAACCGTTCAAAATGGATTGAGTTGAAAGATCTGATAAAAGTTGGTGCAGTAGAAAGCAAAATCTTAGTGACAACACGTAGTAACTTGATTGCTTCGATGATGGGAACGGTTCCCATGTATACTTTAAAAGGTCTTTCTTTGGATAATTGTTTGTCTCTCTTTGTCAAATGGGCATTTAAGGAAGGAGAAGAAGTAAAGTATCCACATCTATCGGAGATTGGAAAAGATATAGCGAAAAAATGCCGAGGGATTCCATTAGCAGTGAAAACGTTAGGAAGTTCACTCTTCTCAAAATTTGATTTAGATAAGTGGAAGTTCGTCAGGGACTCCCAAATATGGAATTTAAGGCAAAACAAAGATGATATTTTACCTGTGCTTAAGTTAAGCTATGATCAAATGCCATCCTATTTGAGACATTGTTTTGCTTATTTTTCCCTTTTTCCCAAAGATTATCTTTTTACTCTTGGTGAAATTTGTAATCTATGGGATGTATTTGGATTAGTTCAATCACCAAATGGAAGTCAAAAGCTAGAGAACATTGCAAGAGATTATATAGATGAGTTACATTCAAGATCATTTCTTCAGGATTTTGAAGACTTTGGCCAGACATGTGTTTTCAAAGTACATGATTTGGTGCACGATCTTGCAATGTATGTAGCAAAAGACGCATTTGTGGTGGTAAACTCCTATACTCAAAATATACCTGAGCAAGCAAGACATTTATCAATTGTTGAAAATGACTCACTTGGTCATGCTTTGTTTTCCAAGTCGAAAAGTGTGAGAACTATTTTGTGTCCCATCCAAGGAGTAGGTGTCGATAGTGAAACTCTCTTGGATTCATGGATATCAAGATACAAATACTTGCGCTATTTAGATTTAAGTGATTCTTCATTTGAGGAGCTGCCTAATTCGATTTCTAAATTGGACCTTCTTCGAGTTCTCATTCTTTCTCGCAACAGCAAAATCAGAAGACTTCCTCATTCTATATGTGAACTCCAAAATTTGCAAGAGTTGTCAGTCAGAGGATGCATGGAGCTTGAAGCATTGCCTAAAGGACTAGGGAAGCTAATCAACCTTCGACAATTGTTTATAACAACAAAGCAATCTGTTTTGTCACATGATGAATTTGCAAGCATGCACCATCTTCAAACTTTGGGTTTTCATTATTGTGACAATTTGAAGTTTTTCTTTTACGCTGCACAACAACTCGCTTCCCTTGAAACATTGTTTGTTCAATCATGTGGGAGCCTAGAGGTCTTACCTCTATATTTTTCCTAA
Protein sequences
Name | Description | Sequence |
---|---|---|
Disease resistance protein; Calcium-binding EF-hand | Disease resistance protein; Calcium-binding EF-hand [Medicago truncatula]. | MINSTSTSTQRPVLALSHQENIEHFDIEQLVSRLRHKLSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQNKDDILPVLKLSYDQMPSYLRHCFAYFSLFPKDYLFTLGEICNLWDVFGLVQSPNGSQKLENIARDYIDELHSRSFLQDFEDFGQTCVFKVHDLVHDLAMYVAKDAFVVVNSYTQNIPEQARHLSIVENDSLGHALFSKSKSVRTILCPIQGVGVDSETLLDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFITTKQSVLSHDEFASMHHLQTLGFHYCDNLKFFFYAAQQLASLETLFVQSCGSLEVLPLYFS |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPfam: PF00931 IPR002182
|
20-223 | NB-ARC,NBS NB-ARC
|
ENIEHFDIEQLVSRLRHKLSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQNKDDILPVLKLSYDQMPSYLRHCFAYFSLFPKDYLFTLGEICNLWDVFGLVQS |
superfamily: SSF52540 | 26-171 | SSF52540 | DIEQLVSRLRHKLSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQN |
FPrintScan: PR00364 IPR000767
|
37-51 | DISEASERSIST Disease resistance protein
|
KLSGKKFVLVLDDIW |
HMMPanther: PTHR11017:SF28 | 38-417 | PTHR11017:SF28 | LSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQNKDDILPVLKLSYDQMPSYLRHCFAYFSLFPKDYLFTLGEICNLWDVFGLVQSPNGSQKLENIARDYIDELHSRSFLQDFEDFGQTCVFKVHDLVHDLAMYVAKDAFVVVNSYTQNIPEQARHLSIVENDSLGHALFSKSKSVRTILCPIQGVGVDSETLLDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFI |
HMMPanther: PTHR11017 | 38-417 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LSGKKFVLVLDDIWDDNRSKWIELKDLIKVGAVESKILVTTRSNLIASMMGTVPMYTLKGLSLDNCLSLFVKWAFKEGEEVKYPHLSEIGKDIAKKCRGIPLAVKTLGSSLFSKFDLDKWKFVRDSQIWNLRQNKDDILPVLKLSYDQMPSYLRHCFAYFSLFPKDYLFTLGEICNLWDVFGLVQSPNGSQKLENIARDYIDELHSRSFLQDFEDFGQTCVFKVHDLVHDLAMYVAKDAFVVVNSYTQNIPEQARHLSIVENDSLGHALFSKSKSVRTILCPIQGVGVDSETLLDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFI |
FPrintScan: PR00364 IPR000767
|
134-148 | DISEASERSIST Disease resistance protein
|
CRGIPLAVKTLGSSL |
superfamily: SSF52058 | 260-478 | SSF52058,LRR | KVHDLVHDLAMYVAKDAFVVVNSYTQNIPEQARHLSIVENDSLGHALFSKSKSVRTILCPIQGVGVDSETLLDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFITTKQSVLSHDEFASMHHLQTLGFHYCDNLKFFFYAAQQLASLETLFVQSCGSLEVLPLYFS |
Gene3D: G3DSA:3.80.10.10 | 331-472 | G3DSA:3.80.10.10 | LDSWISRYKYLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKIRRLPHSICELQNLQELSVRGCMELEALPKGLGKLINLRQLFITTKQSVLSHDEFASMHHLQTLGFHYCDNLKFFFYAAQQLASLETLFVQSCGSLEV |
HMMPfam: PF12799 | 340-375 | LRR_4,Leucine Rich repeats (2 copies) | YLRYLDLSDSSFEELPNSISKLDLLRVLILSRNSKI |
HMMPfam: PF00560 IPR001611
|
387-409 | LRR_1 Leucine-rich repeat
|
NLQELSVRGCMELEALPKGLGKL |
FPrintScan: PR00364 IPR000767
|
454-470 | DISEASERSIST Disease resistance protein
|
QQLASLETLFVQSCGSL |
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