PRGDB00044676 (At5g38850)
At5g38850 | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 108740688 (DQ528392) |
Gene Class | Unknown |
Domain Type | LRR, LRR, LRR |
Gene Species | Arabidopsis thaliana |
DNA Sequence
TCTCAAGAAGATGTCTTTGTCAAGTTCATGGTATTTAAAGAAACTTCCGGATCTGTCAAATGCTACAAATCTCGAAGAATTGGATCTGAGAGCTTGCCAGAATTTAGTAGAGCTTCCTTCCTCCTTTTCTTATCTGCATAAGCTAAAGTATTTGAATATGATGGGATGCAGAAGGCTAAAAGAAGTTCCACCTCATATCAACTTGAAGTCTCTTGAATTGGTCAACATGTATGGATGCTCAAGATTAAAAAGCTTTCCAGATATTTCTACAAACATCAGTTCACTCGACATATCATACACTGATGTGGAAGAACTACCTGAATCAATGACGATGTGGTCTCGCCTACGTACTCTCGAAATATACAAAAGTAGAAACCTCAAGATAGTAACACATGTGCCCCTAAACCTAACATATCTAGACCTCAGCGAGACTAGAATTGAGAAGATTCCAGATGACATCAAAAATGTTCATGGGCTGCAAATTTTATTTCTAGGTGGCTGCAGAAAACTCGCATCATTGCCAGAGCTTCCTGGTTCGCTCTT
Protein sequences
Name | Description | Sequence |
---|---|---|
disease resistance protein | disease resistance protein [Arabidopsis thaliana]. | LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52058 | 1-180 | SSF52058,LRR | LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL |
Gene3D: G3DSA:3.80.10.10 | 1-175 | G3DSA:3.80.10.10 | LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPE |
HMMPanther: PTHR11017:SF20 | 1-180 | PTHR11017:SF20,SUBFAMILY NOT NAMED | LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL |
HMMPanther: PTHR11017 | 1-180 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL |
HMMPfam: PF13855 | 22-79 | LRR_8,Leucine rich repeat | TNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGC |
ProfileScan: PS51450 IPR001611
|
23-45 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLEELDLRACQNLVELPSSFSYL |
ProfileScan: PS51450 IPR001611
|
47-69 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
KLKYLNMMGCRRLKEVPPHINLK |
ProfileScan: PS51450 IPR001611
|
135-156 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLTYLDLSETRIEKIPDDIKNV |
HMMPfam: PF00560 IPR001611
|
135-155 | LRR_1 Leucine-rich repeat
|
NLTYLDLSETRIEKIPDDIKN |
List of References
Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885
WorldCat.org
DOI
(P p)
List of Contributions
There has not been any contribution yet.