PRGDB00044676 (At5g38850)

At5g38850
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	108740688 (DQ528392)
Gene Class	Unknown
Domain Type	LRR, LRR, LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana ecotype Zdr-1 disease resistance protein (At5g38850) gene, partial cds.

DNA Sequence

TCTCAAGAAGATGTCTTTGTCAAGTTCATGGTATTTAAAGAAACTTCCGGATCTGTCAAATGCTACAAATCTCGAAGAATTGGATCTGAGAGCTTGCCAGAATTTAGTAGAGCTTCCTTCCTCCTTTTCTTATCTGCATAAGCTAAAGTATTTGAATATGATGGGATGCAGAAGGCTAAAAGAAGTTCCACCTCATATCAACTTGAAGTCTCTTGAATTGGTCAACATGTATGGATGCTCAAGATTAAAAAGCTTTCCAGATATTTCTACAAACATCAGTTCACTCGACATATCATACACTGATGTGGAAGAACTACCTGAATCAATGACGATGTGGTCTCGCCTACGTACTCTCGAAATATACAAAAGTAGAAACCTCAAGATAGTAACACATGTGCCCCTAAACCTAACATATCTAGACCTCAGCGAGACTAGAATTGAGAAGATTCCAGATGACATCAAAAATGTTCATGGGCTGCAAATTTTATTTCTAGGTGGCTGCAGAAAACTCGCATCATTGCCAGAGCTTCCTGGTTCGCTCTT

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Arabidopsis thaliana].	LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52058	1-180	SSF52058,LRR	LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL
Gene3D: G3DSA:3.80.10.10	1-175	G3DSA:3.80.10.10	LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPE
HMMPanther: PTHR11017:SF20	1-180	PTHR11017:SF20,SUBFAMILY NOT NAMED	LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL
HMMPanther: PTHR11017	1-180	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTYLDLSETRIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL
HMMPfam: PF13855	22-79	LRR_8,Leucine rich repeat	TNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGC
ProfileScan: PS51450 IPR001611	23-45	LRR,Leucine-rich repeat profile. Leucine-rich repeat	NLEELDLRACQNLVELPSSFSYL
ProfileScan: PS51450 IPR001611	47-69	LRR,Leucine-rich repeat profile. Leucine-rich repeat	KLKYLNMMGCRRLKEVPPHINLK
ProfileScan: PS51450 IPR001611	135-156	LRR,Leucine-rich repeat profile. Leucine-rich repeat	NLTYLDLSETRIEKIPDDIKNV
HMMPfam: PF00560 IPR001611	135-155	LRR_1 Leucine-rich repeat	NLTYLDLSETRIEKIPDDIKN

List of References

Erica G Bakker, Christopher Toomajian, Martin Kreitman, Joy Bergelson
A genome-wide survey of R gene polymorphisms in Arabidopsis.
Plant Cell: 2006, 18(8);1803-18
PubMed:16798885 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show