PRGDB00044682 (At5g38850)

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At5g38850
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108740676 (DQ528386)
Gene Class Unknown
Domain Type LRR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype Var-2-6 disease resistance protein (At5g38850) gene, partial cds.

DNA Sequence

TCTCAAGAAGATGTCTTTGTCAAGTTCATGGTATTTAAAGAAACTTCCGGATCTGTCAAATGCTACAAATCTCGAAGAATTGGATCTGAGAGCTTGCCAGAATTTAGTAGAGCTTCCTTCCTCCTTTTCTTATCTGCATAAGCTAAAGTATTTGAATATGATGGGATGCAGAAAGCTAAAAGAAGTTCCACCTCATCTCAACTTGAAGTCTCTTGAATTGGTCAACATGTATGGATGTTCAAGATTAAAAAGCTTTCCAGATATTTCTACAAACATCAGTTCACTCGACATATCATACACTGATGTGGAAGAACTACCTGAATCAATGACGATGTGGTGTCGCCTACGTACTCTCGAAATATACAAAAGTAGAAACCTCAAGATAGTAACACGTGTGCCCATAAACCTAACATATCTAGACCTGAGCGAGACTGGAATTGAGAAGATTCCAGATGACATCAAAAATGTTCATGGGCTGCAAATTTTATTTCTAGGTGGCTGCAGAAAACTCGCATCATTGCCAGAGCTTCCTGGTTCGCTCTT


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Arabidopsis thaliana].

LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRKLKEVPPHLNLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWCRLRTLEIYKSRNLKIVTRVPINLTYLDLSETGIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL


Domains

Domain Start-End Description Sequence

superfamily: SSF52058
1-180 SSF52058,LRR

LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRKLKEVPPHLNLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWCRLRTLEIYKSRNLKIVTRVPINLTYLDLSETGIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL

HMMPanther: PTHR11017:SF20
1-180 PTHR11017:SF20,SUBFAMILY NOT NAMED

LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRKLKEVPPHLNLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWCRLRTLEIYKSRNLKIVTRVPINLTYLDLSETGIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL

HMMPanther: PTHR11017
1-180 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRKLKEVPPHLNLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWCRLRTLEIYKSRNLKIVTRVPINLTYLDLSETGIEKIPDDIKNVHGLQILFLGGCRKLASLPELPGSL

Gene3D: G3DSA:3.80.10.10
1-175 G3DSA:3.80.10.10

LKKMSLSSSWYLKKLPDLSNATNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRKLKEVPPHLNLKSLELVNMYGCSRLKSFPDISTNISSLDISYTDVEELPESMTMWCRLRTLEIYKSRNLKIVTRVPINLTYLDLSETGIEKIPDDIKNVHGLQILFLGGCRKLASLPE

HMMPfam: PF13855
22-79 LRR_8,Leucine rich repeat

TNLEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRKLKEVPPHLNLKSLELVNMYGC

HMMPfam: PF00560
IPR001611
135-155 LRR_1
Leucine-rich repeat

NLTYLDLSETGIEKIPDDIKN


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Analyses

Blast

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